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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0342200 |
Transcript ID | LotjaGi6g1v0342200.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Calcium-binding family protein; TAIR: AT4G27280.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q9ZPX9|KIC_ARATH Calcium-binding protein KIC; TrEMBL-Plants: tr|A0A151RB94|A0A151RB94_CAJCA Caltractin; Found in the gene: LotjaGi6g1v0342200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65551769..65552382) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGTGCTTAGCAACAACTTCCCCCTCTATTGCTCTATTTTTTAATACTGTACCATACTTGTCAACTTCTTATCAACAC CTATCATTACTCTTTCCTTAAACACTTTCTGTGTCTTTTTCATTCTTCATCTTACCATATAAATGCACATAGTCACATAG ATAACTTCCCTACAAGAGAAGATTTTCCCCAACATTGTTCCCACTATAGAACACAAATTAGGCCTTTTCTCCTGTTTCTA ATTCTTTCTTTCTTTATTAAGAGATTCAGATGGCATCGAAGAAGAGCCCGATTGTTTTCGAGGACTACTTCCCGGCGATG ATGGAGAAACTGGGTACTGAGGGGTTTATGAAGGAGCTGACAAATGGGTTTCAGTTGTTGATGGACACGGAGAAGAAAGT GATCACATTTGAGAGCTTGAAGAGGAACTCTGCATTGCTCGGGTTAGAAGGGATGAGCGACGAGGAGATCATGTGCATGC TGAGAGAAGGGGACATAGATGGAGATGGCGCTCTGGATGAGATGGAGTTCTGCACACTCATGTTCAGGTTGAGTCCTGCT TTGATGAACAATTCTAAGGAACTTTTGGAGGAAGCAATTTTTAGTGACCTTTAG
CDS sequence (LotjaGi6g1v0342200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCGAAGAAGAGCCCGATTGTTTTCGAGGACTACTTCCCGGCGATGATGGAGAAACTGGGTACTGAGGGGTTTAT GAAGGAGCTGACAAATGGGTTTCAGTTGTTGATGGACACGGAGAAGAAAGTGATCACATTTGAGAGCTTGAAGAGGAACT CTGCATTGCTCGGGTTAGAAGGGATGAGCGACGAGGAGATCATGTGCATGCTGAGAGAAGGGGACATAGATGGAGATGGC GCTCTGGATGAGATGGAGTTCTGCACACTCATGTTCAGGTTGAGTCCTGCTTTGATGAACAATTCTAAGGAACTTTTGGA GGAAGCAATTTTTAGTGACCTTTAG
Protein sequence (LotjaGi6g1v0342200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKKSPIVFEDYFPAMMEKLGTEGFMKELTNGFQLLMDTEKKVITFESLKRNSALLGLEGMSDEEIMCMLREGDIDGDG ALDEMEFCTLMFRLSPALMNNSKELLEEAIFSDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 112 | 112 | 2.8E-60 | – | |
PANTHER | 1 | 112 | 112 | 2.8E-60 | – | |
Gene3D | 8 | 114 | 107 | 4.3E-19 | – | |
SUPERFAMILY | 23 | 100 | 78 | 6.47E-12 | ||
Pfam | 41 | 93 | 53 | 1.7E-17 | – | |
ProSiteProfiles | 62 | 97 | 36 | 10.608 | ||
ProSitePatterns | 75 | 87 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi6g1v0342200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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