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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0344600 |
| Transcript ID | LotjaGi6g1v0344600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 4-hydroxy-4-methyl-2-oxoglutarate aldolase; TAIR: AT5G56260.1 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; Swiss-Prot: sp|Q9FH13|RRAA3_ARATH Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3; TrEMBL-Plants: tr|I3T2K9|I3T2K9_LOTJA 4-hydroxy-4-methyl-2-oxoglutarate aldolase; Found in the gene: LotjaGi6g1v0344600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65713796..65716202) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAGTCCTCTTCTTCATATGTTGACAACACCACCACCTCACAACTACAACTCCCTTTTTCTTCTTCTTCTTCTGCTCC TCTCTCCACCGCACCACCACCAGCCACCATTGAAACCTTCAACCTTCAACTTCCAGAACCTAACTTTTCCGCCCACCCCA GTCTCCACCATCAATAGTCCCAGACCAGCACTAAGACTTTTTCTCTCTCTTGACCCACATCAAACTTCATTTGCAGGAGC CACCACACATACCCACCCCCAATCAACTGTAAAGCTCACAACTTTATGGGGAAATCTCCTTGTTCGGTGCAATAATTTGA GAGGAATTAGACAGATCGAAAAAGGGGAGGAAAAAGGGGTTAGACACTACATATCAAAAGGTAATTTCCAAGGAGAACTA CATAGTAAATATAATATCAATCTCATTTAAGCCTCCCTTCCAACTAAATTAGACTTCCTCATCATCAAGCAGATAGGCAA CAAAGCAAATATTCAATTTCCAAAGCAATCAACATCAATTCCTTCAATTATATGAGAAATGACTAAATGTGATTTAAAAA AAATTCAAAACTGAAACTAAAAATTTACGTGGTCATCCCTTAATTGTGCTAAGATTAATATCTCGTTTAATTCTGCAATG GCACTCACATTGATATTTCTTTAATTGCAATATCTCTTTTAAATACGTTTTCTCTTTTAATTGCGCTATCAATTATTAGT AAATTGAAAATAATAGTAATTCAAATTCAAATCGGTAGATAATTAGTGTAGATCAATAAATTTTTTAAAGCATGATATTG CCCATACTCAATCAACTTGATTTGTGCATGCCTTATTAATTAATAATAATTGTCACTACATCTAGTTTTTCTATAAAATC AAACAAAGACTTGACGACCAATCTCATCCCTCAACATTTCTTGCGGTGCTGGATTGAACTTGAAGATACAGAAACTCATT TCTCCTCTCTCTGTCTCGGCGTAAGCATCAACCGGTTATTTGTTTAGTATACTTGTTTTTTTTCCTATATAATTAAGCAC CATACCAAACATGTTATCTCCAATTCAAACCTTATGTGTCAATGTGTCATTAACAATAAAAACCCTGTTTTCCTTCTAAA ACCATGATTAGGACTACCAATGCATAAGTTTATGGTAGAAATAACAACCACAGAAAAAGAAATTATTGATATGATATGTG ATGTAATAAAAATATGATTGGTGGAAATGAGATACAAGAAAGAGGAAAAGAATAGTATGAATCAATCAAACCTGCTAGCA ATTGCCATTGGTTTCTTCATTCAATATGGTGCAACTCGAAAATAAGCATTTTGAATTCTGATTAATTTGTAATAACTCTT TGATTCTTGCCGGCAGGAGTAGCATGGGTGGTCTAGCAATTGCAGATATTTGTGACGTTAATACAGAAAAAATAGCAAGT GGCGAAGTGAGGATATTAGATCCAGTGTTTCAGAGTTATGGGCAGGCTCGAACATTCTCCGGACCCATTGTAACTGTGAA GGTGTTTGAAGACAATGTATTGATTAAGGAGGTTCTTCAAACGAAAGGAGAAGGAAAAATTTTGGTTATTGATGGAGGAG GAAGCATGAGGCGTGCCTTGATTGGAGGACATTTGGTGGAGTTGGCACATAGCAATGGTTGGGCTGGGATTGTGGTAAAT GGCTGTGTTAGAGATGTGGATGACATTTATGAGTGTGGCAATATCGGTGTGATGGCTTTGGGTTCATATCCTCTCAGGCC TGGTAAAAAAGGCACCGGAAAAAAGCATGTCCCTGTTCATGTTGCAGGAGCAACGATTCATGAAGGAGAATGGCTCTATG CAGATAACGACGGTGTCCTTGTCTCCAAATTTCAGATATTACATAACTGAATTGTACGTGTTAGAAGTCCATATTGATTA AAGATATGATCAACCCTCAAACCACATTGGTTACAGAAGGGTTTTTTTTAATACATTATGACTTTTATATTATTATTTCT AAATGTTTATAAATCACTAAACAATCATACTCTTCATTCAATCAAATAAATATTCTATATAGTGAAAAAGAATAAACAAA ACATCACATCTATCAATTTGAATATTTTTGTTGAAATGGAGGTATTATATAGTATAATCTTTTGGTTATGATAATTAAAT GATGATTATCAAGTGTGTCTTATGGCGGGCCCGGGGTTTCCTGGTTGCCTCTTTTCTTCCCTTCTGGTGGCTGTGGCAGA AACGTAGTAAGGAACAGTGAAGAGTCCATGGATGAAACACAGGATGCCACCAATTGATAGGAAGTGGTGGTTATACAACA CGCAAGGTTTTCTTGATCTTGAGTTGGCCAATGTGCCTATGATCAGCATAGAGAATGCAACTGCTAATACAATCCTGCAA ATTAACA
CDS sequence (LotjaGi6g1v0344600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGTCTAGCAATTGCAGATATTTGTGACGTTAATACAGAAAAAATAGCAAGTGGCGAAGTGAGGATATTAGATCC AGTGTTTCAGAGTTATGGGCAGGCTCGAACATTCTCCGGACCCATTGTAACTGTGAAGGTGTTTGAAGACAATGTATTGA TTAAGGAGGTTCTTCAAACGAAAGGAGAAGGAAAAATTTTGGTTATTGATGGAGGAGGAAGCATGAGGCGTGCCTTGATT GGAGGACATTTGGTGGAGTTGGCACATAGCAATGGTTGGGCTGGGATTGTGGTAAATGGCTGTGTTAGAGATGTGGATGA CATTTATGAGTGTGGCAATATCGGTGTGATGGCTTTGGGTTCATATCCTCTCAGGCCTGGTAAAAAAGGCACCGGAAAAA AGCATGTCCCTGTTCATGTTGCAGGAGCAACGATTCATGAAGGAGAATGGCTCTATGCAGATAACGACGGTGTCCTTGTC TCCAAATTTCAGATATTACATAACTGA
Protein sequence (LotjaGi6g1v0344600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGLAIADICDVNTEKIASGEVRILDPVFQSYGQARTFSGPIVTVKVFEDNVLIKEVLQTKGEGKILVIDGGGSMRRALI GGHLVELAHSNGWAGIVVNGCVRDVDDIYECGNIGVMALGSYPLRPGKKGTGKKHVPVHVAGATIHEGEWLYADNDGVLV SKFQILHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 164 | 162 | 2.3E-67 | – | |
| PANTHER | 3 | 164 | 162 | 2.3E-67 | – | |
| Gene3D | 4 | 166 | 163 | 1.7E-61 | – | |
| SUPERFAMILY | 6 | 165 | 160 | 9.29E-44 | ||
| Pfam | 7 | 160 | 154 | 4.7E-42 | ||
| CDD | 7 | 161 | 155 | 7.94876E-54 | ||
| TIGRFAM | 7 | 161 | 155 | 2.1E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonuclease inhibitor activity | Stops, prevents or reduces the activity of a ribonuclease, any enzyme that catalyzes the hydrolysis of phosphodiester bonds in chains of RNA. | ||
| Biological process | Regulation of RNA metabolic process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving RNA. |
Expression pattern of LotjaGi6g1v0344600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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