Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0344700 |
| Transcript ID | LotjaGi6g1v0344700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 4-hydroxy-4-methyl-2-oxoglutarate aldolase; TAIR: AT5G56260.1 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; Swiss-Prot: sp|Q9FH13|RRAA3_ARATH Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3; TrEMBL-Plants: tr|I3T2K9|I3T2K9_LOTJA 4-hydroxy-4-methyl-2-oxoglutarate aldolase; Found in the gene: LotjaGi6g1v0344700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65727280..65732120) extracted from Lotus japonicus Gifu genome v1.2.
AGGAAAAGTACTTATTTGACTAAATAGGTTAAGATTACATTAAAATAAATTTACCGCAAGTTTGGATATTTATCCTCATA ATTACTCTTGTTTTTTCTCCTCTGAATTAACTCCACTATGTCTCTATCCATATTTCTCTTCTATAAAAGCAAACGGAGCC CCAAGTACCAATCTCATTCCTCAACGCAATTCATTCGGTGCCGGGTTGAACTTGAAGATACTTTCCCACAGAAACTCAAT TCTCCTCTCTCTGTCTCCAGGTAAGCATCAACGATATTGCTTCCACAAATTTTGAGTAGCTGATCAATCATCATATTTAG TTTTTTAAATCCATTAAAGCAAGTGTAGTTGTTTGTGTTTCAACCTGAATACTGTGTTTTAAGCCTTCAATTTAACATGT TGCTACCATGCCAAACAAATGGGTCATCTTATCTTCAAATCAAATGGAGTCCCACATCGTTTTTGGACAACCACACCCTT TTCTTCCAACCAAACTCTATCAATAGCAATCCAAATCAAGTTTTTCCTTCTAAAACCATGACTTCTCAATGTATGGTAGC AATTGCTATTGGTTTCTTCCTGTTGTTTTTCATGGTCAACTCCAAAGTAAGCCTGATTGATTTTGAAATAACTCTTTGAT TCCACTGTTTTTCACGAATTTGAGGTCTGTTCATGTAGCTGCAGGAAGGTAACATGGCTGCTCTACCAACTGCAGATATT TGTGACTCAAATGCAGCATCTTTAGTGAACGGTGATGTGAGGATACTGCATCCAGTGTTCCAGAGTTATGGTCAGACCCG GGCATTCTCGGGCCCCGTTGTGACGGTGAAGGTGTTAGAAGACAATGTTTTGGTTAGGGAGGTTCTTGAGATGAAAGGAG AAGGAAGAGTTCTGGTTATTGATGGAGGAGGAAGCATGAGGTGTGCATTGATGGGAGGGAATATGGTGCGGTTGGCACAG AGTATGGGTTGGGCTGGGGTTGTGGTGAATGGGTGTGTTAGAGATGTGGATGAGATCAATGAATGTGACTTTGGCGTGAG AGCTTTGGCTTCTTATCCTCTCAAATCCGGGAAAAAGGGCACTGGAGAAAAGCATGTCCCTGTTTATGTTGCAGGTGCAT TGATTCATGAAGGAGAATGGCTGTATGCAGATAATGACGGTATTCTTGTGTCAAAGTTTGAGTTGTCAACCTGAAATTCT GGAGGTGAATTGTATTGTATGTTCAGTAGGATGAAGTCATGCTGTACTGGTTTATTTATAAAATAAAAGTTATTCACATG ATGAATGACCGAATATTTCACAATTTCTTGTGTGAACATTGCCTAAACACACTTGTTTAAACATGTGACAAAGGACAACG TCCATGGTCTTAAAACTTGACTAAATCTCCTATCCTACCCACAGGATTTGAGGCAGCTGATAAATCTGAATTTTCAAAAG ATATTTCCTCACCAAATCAAACAAAACTTGCTCACAAATTATCGGTGATCAATTTCTAAAGTACTTTCCCAATTTGCTGC TTAGTCAAACTAAATCTCATTGCTTTGCTTGGTGGGGATCAACTTTCCACCCACCAAAGTCTTGAGAGCGATAGGTATAG CCGTAAAACAAACTTAGACAATAGATCGACAAGAGTGATTCTAAAATATCAAACCATGGCAACCACAAGAGTGATTATAA ATATTATCAAACCATGGCAACCAATGCTTGAACCCGTTAGTTCTGATCCAAATTGATAGTAGGAGCGCATGCCATATGAT GTGAGGCTATAGTCAACTCAACAACAACAATAAGTTCTATGGTCATAAACAATATCTGCTATTTTAGGTTACAAACAAAG GGTACACTGACAAAGAAATATATACACTGATGGTTAAATAAACCTGGTCTTATGTTTCAATATAGTGTACCAGTTGTTTA CCTAGTAGAACAGTTGATCAAGAAAGAATAAGTAATTACTGCCACAATCATGAAGATCAATAAACACCACTTTCTCTTTA TAATCTGATGGGGCCTGATAATGATAGAAACCAGAAAATTAGCAAGAGTTTATTGATAGAACCCTAATTCCCAATTGGGG ATTGGGGGAAAGATACATGAGAGAGATACCAAACACCCTCTCTAACCCTAGAAAGAGAACCACTTCTCTCTCTAAACCCA ATTCCTAACTGAATACAAAGATACCCCTAACTCTCAAATGTCTGTTATTTATAGGCTACATGCCTCAACAACATTCTAAC TAACTCACTAAGTATAACTAACTAACTAACCCCTAACCTTGAGTTCCTATCATAAAACACTCCACACTAGCAACTTTCAT TGGTAGAAGCATTCTAACATGAGAGTTTTCCTTAGCCAGGATTGAGGAATTTGACAGACAAAGGCTGATTACAAACATAC ATACCACACTAGCAACTTTCATTGGTAGAAGCATTCTAACATGAGAGTTTTCCTTAGCCAGGATTGAGGAATTTGACAGA CAAAGGCTGATTACAAAAATACATACCACACTAGCAACTTTCATTGGTAGAAGCATTCTCACATGAGAATTTTCCTAGGC CAGGATTGAGGAATTTAACAGTCAAAGGCTGATTACAAACATACATACCACACTGGCAACTTTCATTGGTAAAAGCATTC TCACATGAGAATTTTCCTTGGCCAGGATTGAGGAATTTAACAGTCAAAGGCACACAAGGATGCCACCTAAATATGAATCC TTCAAAGTTCAAACTAATATACTCCTCAACGACAATGAACATCAACATAGTTGAGAGAAAATAAACAAGCAGGTCAACAT GACTTCAAAAACTAATATCATGATCATTACAAGAAAAAGGAACCACTTTAGTTTAACATCAATACAATTCAAGCCATATT GACATATCAGCAACAGAAAGATCAAATTATCTAATAGAAATCCATGATTACTTGCAAAATCATAAGGGTTAAAACAACCC AAGAAGTATTCAACCAAAGATGCTCAGACACCATATATAAACCAAGACCATGTAAACAACCAGAACATTTTCATACTGCC AAAAATTAAACAGCTCAATCTAAAGACTATCCGATAGCCACAAATAAATTACAGAGCATATAAAAAGCTATACCACACAC AATCCTAATTCTTTGATGACTTGAACGCCTCCAAAATCAACCTAGTCTGCTCGTCAATCAGTTGAGCACGCTTAGCAAAC AGCTCCAGCTCCGCAACCTGTATCTTCTTCCACCTTCCATCCAACTCGGCCCTCTTTGATGCTCCAATTAACTCCAATCC CTTCTTCACCACATCCTCATTCAGCCCAGTCACACCGTAACGAAACATTTCACTCAAAAGCACACTTGTATCAGCCTTCA GATCAGTGTCCACCACCTTTCCAGCAGATTCCTTCACAATCACCACTTGCATGTCGGATTCCGGTGGTGGTGGTTCCTGT CTAGCTTCGCCTTTCGCTTTCTTTGCAGAAGAAGCCACATTCTTGCTGCTACTAGTGGCTTCCTTCTTGGGACTCTTTGC AGGTTTGCCATTAGCCTTCGGCTTCTCTTCCGCGGCTGCTGCTTCATTGGCTCCACTTCCCCATACCTTCTTGGCCAATT CAAAAGTTTTCTGATCATGGACTTTGGGGAATTTGGGGGTCTCTCCATTCTTCCCTTTGCCTGCAAGGGTCTGAAACTTC TTCTTCAGCCTTCGAACCTTATCCTTCACCTGAGTGCGGGTAGCATCAGCTTGAAGCGACCTGATAACGAAATCGTAAAA AGCATCAGGGTACTTCAACGGGTCATTCCCAGTTTTCGAAATGAAATCAGCAAGCCCCTTGAGAATGGCGATCTCATCCT CATCGGACCACAATCTCGTAAACTGCTTCTTGGAGTCGTTCCCGGACTTCTTCCCGTCCTCCTCCATCTCCTCATCGGAA CCAGCGGCGGCGGCGGGGGCCGAGTCAACTGCCTTCTTCTTAGCCCGTTTGGAGTCTCCGGCGTTGGCATTGCTCTCGGC GGCGCGCTTGGCTGCCGATTTGGCCGGAGCCGGGGAGGGTTGAGCCTTGGGCTTGTGGGTCTGGGTCTGGTCCATGGGCT TGGTGGCGAGGGGTTTGACTTTAGGGTTAGGAGTGGGAGCGGATGCGGAGGGGGCCTGGTCGGAGTCGGTGTCGGACTCA GAATCGGATTGGGTGGCGGAATCGGATTCGGGTTCGGGTTGAGGAGGTTTGGTGTGGGAGGTTGTGGCTGCCGGAGGGGC TGGAGCGGTGGTTTCATCCTCCTCCTCCTCCTCAGAGGAACCTTCTTCTTCTGAGGAAAGTTCTTCTTCTTCTGCTGCTG CGTGTTTTACTTGAGAGAGAGGTTGGTCATCTTCCTCCTCTGATTCGGAGGAGGAAGACGCGGTGGGTGGATCTTCGAGA GGAGAAGGGCGCTTCTGCTTCTGTGCCATGGTGATTTGGGATTAGGGTTTTGGAGCAGAAGCGACAGCAACAGGGAGTGA GAGAGTGGTGAAGACTAACCTCACCGAACACAATATATAGGCACAAACAAAGAGGCATAATAGTAATAGAATGGCTTAAT TGCACTTTTGGTCCCCCAACTATTGTCTTCCTGCGAAAATCGTCCTCAAACTTTAAAATTAGCAAAAAATGTCCTCCAAC TATACATGCAGTTGCACTTTTGGTCTATCGTTTACCTTCCGTGAGAAAACTAACGTGAGAATCTGATGTGGCTCCCTCAC GCGTGTCTCACGTGACTTTCTTCAGAGAGCTTGATGACTGGACAAGTCACATGCTTCTCACGTGACTCTAAAAGGCTCCA ACGGTCATCTCCCTCCTCCATCCTCTTCTTCACCATGGAAC
CDS sequence (LotjaGi6g1v0344700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTCTACCAACTGCAGATATTTGTGACTCAAATGCAGCATCTTTAGTGAACGGTGATGTGAGGATACTGCATCC AGTGTTCCAGAGTTATGGTCAGACCCGGGCATTCTCGGGCCCCGTTGTGACGGTGAAGGTGTTAGAAGACAATGTTTTGG TTAGGGAGGTTCTTGAGATGAAAGGAGAAGGAAGAGTTCTGGTTATTGATGGAGGAGGAAGCATGAGGTGTGCATTGATG GGAGGGAATATGGTGCGGTTGGCACAGAGTATGGGTTGGGCTGGGGTTGTGGTGAATGGGTGTGTTAGAGATGTGGATGA GATCAATGAATGTGACTTTGGCGTGAGAGCTTTGGCTTCTTATCCTCTCAAATCCGGGAAAAAGGGCACTGGAGAAAAGC ATGTCCCTGTTTATGTTGCAGGTGCATTGATTCATGAAGGAGAATGGCTGTATGCAGATAATGACGGTATTCTTGTGTCA AAGTTTGAGTTGTCAACCTGA
Protein sequence (LotjaGi6g1v0344700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAALPTADICDSNAASLVNGDVRILHPVFQSYGQTRAFSGPVVTVKVLEDNVLVREVLEMKGEGRVLVIDGGGSMRCALM GGNMVRLAQSMGWAGVVVNGCVRDVDEINECDFGVRALASYPLKSGKKGTGEKHVPVYVAGALIHEGEWLYADNDGILVS KFELST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 165 | 165 | 2.2E-75 | – | |
| PANTHER | 1 | 165 | 165 | 2.2E-75 | – | |
| Gene3D | 3 | 166 | 164 | 2.4E-66 | – | |
| SUPERFAMILY | 4 | 164 | 161 | 8.11E-49 | ||
| Pfam | 6 | 159 | 154 | 6.8E-46 | ||
| TIGRFAM | 6 | 160 | 155 | 3.1E-61 | ||
| CDD | 7 | 160 | 154 | 7.80424E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonuclease inhibitor activity | Stops, prevents or reduces the activity of a ribonuclease, any enzyme that catalyzes the hydrolysis of phosphodiester bonds in chains of RNA. | ||
| Biological process | Regulation of RNA metabolic process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving RNA. |
Expression pattern of LotjaGi6g1v0344700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…