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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0344900 |
| Transcript ID | LotjaGi6g1v0344900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BHLH transcription factor; TAIR: AT5G54680.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FH37|ILR3_ARATH Transcription factor ILR3; TrEMBL-Plants: tr|A0A0U2I0R6|A0A0U2I0R6_9ROSA BHLH transcription factor; Found in the gene: LotjaGi6g1v0344900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65745861..65749126) extracted from Lotus japonicus Gifu genome v1.2.
AGTTAGTTTCGGTTAGCAGTCAGTTAGTTGGTTTCTTTAGGGGATAATTTAACCTCTCTCATAAATGTTGTGGAATACAT GTTGGCTTAGTTGGTAAGGACAAATTACTTTTCCTCGGTTGTGTGTTTTATTCCTGATGTCGATGTGAAAGTTGTGTTGA TGGACGATATGTAATTACCTTTGTAAGCGACCTATGGTTTCAGAGAAATGCTCTAATTCATGGTAGTGACCGGAACTGAA TCCACCGAAACTTTTTTAGAAAAAAAAACCTTGTGGGAATGGGGTTTAACCAAACCAAAAAGAGAAGGTGGAAGTGCAAT GTGAGTTTTGTGGTGGGAAGTGATAGGTATTGGTGTTCCATTGAGAGTCTGTCGTATGGTACCAAATTCCTCAGTTCCCA CACATGACACGCCCACCATGTTGTTACATTTTCAGATTTTCTAGTTCACTCAATCATTCATCATCACCATATATTCATAT CTACAACAACAACACCACATTCTTAGCTTCACACCCTCTTCGCCAGAGATGGACAACTGCAATTGGATGTTGGATTATGG TGGTTATTTAGAGCTTGACCCTCCCAATTTCTCATGGCCCTCTTCTTCTCCTCCCACTCTCAGGCAGGTTACCCTCATGG TCCTTTCAAAATTGCACATGTTCACCTTTGCTTGCATCACTGCATTATACTCACAACTCATGCTGTGTCATAATACATAA TGTGGACATACTGGACTTTGTATTTTCTGTGAATTATTTTATGTTCTATCATTTTGTTTACCCAAAGCACAATGGTTTTT ATATTTTCCAGTGTGGAACTAGATGACACCTATGGAAATTCAGATGCTTTCAAGGAAAGTGGCTCGAGAAAACGGTAAAC TATTCTATTGTTATGCATACTTGATGTCTCAGATATCTTCAAATTGAAAATTTTATATTAAGCTCTGGTTACCACTTTTT CATTTTAATTTGAAAATTTGTCTCCTCTAAACTAAGACTCTAAGAGGGTGAACCATTGATTTATCCATCCTTTTTTTATG AGAGTCCCCTCTATGTTTCTAAACTTGTATCTTCTCTGTTTCTTTACAGCTCAAGGTCAGGATCCTGCAACCTATCTGGT TCCAAAGCATGCAGAGAGAAAATGCGAAGGGATCAGCTAAATGACAGGCATATCTTATTCTTTCATCCTCTTTGCATCCA ACTTTTCTTGTTATAATTTTTTTTCCTAATCTCATAAGACTTGTTCTAAACATTGTTTTATAGATTTTTAGAACTAAGTT CTATCCTAGACCCTGGAAGGCCTTCCAAAATGGACAAGATGGGTATATTGAGTGATGCCGTTCGAGTAGTGAGTCAGTTA CGAGAGGATGCTCAGAAGCTAAGAGAGTCCACAGAGAATCTACAGGGGAAAATCAATGAATTGAAGGTGAGCATGGTACT TGGTATACACATTTTAATTATGCATGAGGCTGAACCTTACCTTTAATCATACTTTTTTATGCTACATGAATTTTTTCTTT ATAGGCCGAGAAAAATGAGCTTCGTGATGAGAAGCAGCAATTAAGAGCAGAGAAAGATATCATTGAGCAGAAGCTTAAAG CCATAAGTTCACAACCTAGCTTCCTACCCCACCACTCCACCCTCCCAACTGCATTTCCTGCCCCTCGACACGTTGTTGGT AGCAAGCTGATGCCTATTATAGGCTATCCAGGAGTTTCAATGTGGCAATTTTTACCATCTGCTGCTGTTGATACCTCTCA GGATCATGTACTCCGGCCCCCAGTTGCATAAGTTGGCAAAGGTTCTGTATTTTTGTATAATGGAGAAATTTTCTTTTATT TTTGTGCTATAGCTTTTAAATTTACCAGATGTATTAAAAAACCTTGAGTTTAAAGCACTCCTATTGACTGCTGGAGCAAT TTTTCGGTAACTACTCAGCTTTTGGCTATATGTTCAGCCAAATTGAATCTTTTACTTTTGTACTATTGCTTTTACATTTG CCAAGTGTAAAAGAAACCTTGATATGAAAACAACTATTGACTGTAGGACAACTTTTTGATAACCTCTCTAATTTGCTCTA GAATTTACCCATTTAGTTTGGTCAGAAAAAAGATCCAAAATCTTTGCCTCTTTTTATTCATATAATTTTACTGATGTTTT TACATATTCTTGCTCATGAGGCAAGCATGGATGGTCAAAGGTTTTACTTAGAGCATGACTATACATGATATTGATGACTA TATGCGAGCTAAATGAAGGATTATCACATAATTGGAAACTTAGCTAACAAAACTGTTTCAACAAGGTAGTTTGAATCCCA TGTATTTCCCTGATTTGTAGTCTCCCCAAGCTTTTATGACTCCAAAGCTAGTCATTAGTAGAGTACTTAAAGACATGACC AAACTAACTGAGAAATCTATTATAGAGGCCCTTCCATACTTTCTAATTACTTTCTGTACTACTATTAACCCAAGAAGTGA TGCAACAAAACACATTATGGCCAAGATGAGTGCAGTCTCTACATGTTCCATTCCCAACAACAGATATTGCAACGCTGACA TGGTAGAAGAGAAGAAAACCATGAAGGAACATGTAGCTGCTGTTACCTCAGGAGCTATTCCAACCTGAAGAAGAATTGGA CTTATCAGCATTCCACCTCCAATTCCAAATACACCACCCAATGTCCCAGCCAGTAGTGCCATCGATGGAAAAACAAGCTG ATCTGAAGTAACACTGAAGTTTACTAAAATACTTTTCAATCTAAGGGGTCTATGAATCTCTGGTAGAAGAGTTAGGTCTT GTTGACTTTCTTTTCTAAATACCATCCAAGCAGTGAAAACCACAGCAAGAGGTATTTGAACTGATGAGAGAATCCAGTAT CCCACACCACATGGCTCCATTGGAATCATTGCCTGCATAGCTTGAACATGTTAGGGACAACTAGAAATAAAATATTGATA TCTACTCAGATTTTAGGATACATAGGAATCAAAGTAGAAGAAAAGAGATAGAAAAGTACAACAATACAAGACCAAGCTGC CTTATGCAATATACTATTAATTAAACCACTTTCATTGTCACAACTCACAAGTTACCACTACTTTTTTCCCAAGCTTTGAA AATGGAAGTTTGAGATAGAGCCAGCATTTTTACAATAGAAACCAAATAACCACTTAAAACATATGTGGACATCTTTATAC AATTTATTTTAATGCCAAAATCAATTTTGGAAAGAAACTTCTCTGAGTCTTGATGTCAAAATTGTT
CDS sequence (LotjaGi6g1v0344900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAACTGCAATTGGATGTTGGATTATGGTGGTTATTTAGAGCTTGACCCTCCCAATTTCTCATGGCCCTCTTCTTC TCCTCCCACTCTCAGTGTGGAACTAGATGACACCTATGGAAATTCAGATGCTTTCAAGGAAAGTGGCTCGAGAAAACGCT CAAGGTCAGGATCCTGCAACCTATCTGGTTCCAAAGCATGCAGAGAGAAAATGCGAAGGGATCAGCTAAATGACAGATTT TTAGAACTAAGTTCTATCCTAGACCCTGGAAGGCCTTCCAAAATGGACAAGATGGGTATATTGAGTGATGCCGTTCGAGT AGTGAGTCAGTTACGAGAGGATGCTCAGAAGCTAAGAGAGTCCACAGAGAATCTACAGGGGAAAATCAATGAATTGAAGG CCGAGAAAAATGAGCTTCGTGATGAGAAGCAGCAATTAAGAGCAGAGAAAGATATCATTGAGCAGAAGCTTAAAGCCATA AGTTCACAACCTAGCTTCCTACCCCACCACTCCACCCTCCCAACTGCATTTCCTGCCCCTCGACACGTTGTTGGTAGCAA GCTGATGCCTATTATAGGCTATCCAGGAGTTTCAATGTGGCAATTTTTACCATCTGCTGCTGTTGATACCTCTCAGGATC ATGTACTCCGGCCCCCAGTTGCATAA
Protein sequence (LotjaGi6g1v0344900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNCNWMLDYGGYLELDPPNFSWPSSSPPTLSVELDDTYGNSDAFKESGSRKRSRSGSCNLSGSKACREKMRRDQLNDRF LELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTENLQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKAI SSQPSFLPHHSTLPTAFPAPRHVVGSKLMPIIGYPGVSMWQFLPSAAVDTSQDHVLRPPVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 221 | 211 | 5.9E-102 | – | |
| PANTHER | 11 | 221 | 211 | 5.9E-102 | – | |
| MobiDBLite | 24 | 66 | 43 | - | – | |
| ProSiteProfiles | 60 | 111 | 52 | 12.411 | ||
| Pfam | 64 | 111 | 48 | 1.5E-9 | ||
| CDD | 64 | 116 | 53 | 2.9748E-8 | ||
| Gene3D | 64 | 139 | 76 | 1.2E-12 | ||
| SUPERFAMILY | 66 | 139 | 74 | 5.89E-13 | ||
| SMART | 66 | 117 | 52 | 7.2E-10 | ||
| Coils | 101 | 163 | 63 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0344900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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