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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0345400 |
| Transcript ID | LotjaGi6g1v0345400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT5G65810.1 transmembrane protein; Swiss-Prot: sp|Q9M2Y6|Y3972_ARATH Uncharacterized protein At3g49720; TrEMBL-Plants: tr|I3TAG4|I3TAG4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0345400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65796433..65801591) extracted from Lotus japonicus Gifu genome v1.2.
CCGAAATCAATTTAAAAATGCAATGACACGGAAAGTGAGGAGAAAAGATTGCAAGACACACAAACACAAGTGGAATAAAC AAATTATCCAAAAACAGATAAAATAAAAATAAAAAATAAAAATAAAATAGTATGAATGACAGAATCTAAATTCAGTCGGT GGTATCTGAGTCTCTCTCAGTCACAGCTCAGCTCAGAGTGAGAACACTTCACAGATCTGGGCGGTGACTCAAGAGATCTC CACCTTCCTTCATTTCATTTCAGTATCAATCAGGTACCCACTTTGCTTCTTCTCATCTTCATGAACTCCATGTAGTAAAG ATTACATTTTTATTCTAAAGTTTCATCATTTACCATTTGATTCCTTCTAAGGTGTATCATTTGCTCAATTGGATCTGTTT AAGCTTCTTAGTGGATTATAGCTTAACCCCTTTTTTGGATCTTGCTCCTTTTGTGCTTAAGCTTAAGTATTCTTCAAAAT ATTGAAACTTGGTAAATAAATGAGTGATGAGTTTGTTTATTATGTTCAAATATCTGGAACTAGTTTGAACTACTTGCTAA GTTGTGTGTTCAATGCAAATTGCAAAATGATATGAAAATTTTAACTAAAAATTGTATTTTTCTGTTACGGGTTTTGGTGG AATGGTTTGGCCAATTTTGCTGTGTAACCTTATTGCTTGGCAATTTGCATTGCAAAAGATACTTTTTTTTGGTTATGCTA AGTTGCTACCACATGGGGTTAATTGGAATTATGGAGACGGCGAGTGTTTCCACATTTAGTTGAATTTTCCTAGTGATGGC ATGGGATTCTGGTTTGAAGCATAACCTATTGTGCTATGTGCAGCCTCTTATCTTTTATTTACTTCTCAGCTGATATTAAA TTGGTGGCCTTGTCTTTAAGAAACGTTTATCTACAACAAAACAACTTAGGCAGGAGAGATATTTACTGTCATATAGCTAC AAGTTAAAATAAGGAGTGGAAAACATGTGATGAAATATAGATGTAGAAACAATTTTATTTATTTAAAACCCCGTGTTGAA CTTGTTGCTTAATTTGTGCTAGGTCCATTGGCTCATTGCTATTATCATGTCAAGGAGGCCAGTAAATCCTTCACGCCGGT TAGCTGATGGTGGAAGTATATCATTTGTGTCCTCTATCAAGGCTAAATCTCAGAACTCTCCTCTACTATCTATTGGGCTT GTTATAGTGGTACATATCTATTGAAATGTTTATATCAAGTTTCATTATGGAAATAGTCTGATATCATCAGGTTTAATATG CATTATTTCTCTGCGCCTGTTTGATGTAATTACTGCATTTTCTGATGTATGGGTATTTTCTACTTGTTCTTACCTCTATT CCGAACTCTATATATAGTTTTCTCTGTCAACTTTTTCCAGTATGTTCATCAATCATCACTGCTTGCTTTCAATACACATT GCAATTAATGAGTTGATATATGCAAATTTTCAGGGTGCAATCCTCCTCATTGGTTTTATTTATAGCAGCTCAGGTTTGTA ATTGATCCTTTGACTTGAAGTTTAAAACTCTCATGATAATGGATGTTTTATCGAAGAATTATATAAGGATTTTGAATTGA ACAGTTCTAAATCATCATACACGGTCTTTCTAATAATCATCCTACTTACTAACTGAAGAGTGTACTGAATGTTTTTTAGG TTTCAAGATATACATTTATTTTTTCATTTAATGCTTTCTTTATAAAGTAGTAGGAGGATTTGTATGAGTGTTTATAGGAG GACATAGAAATGCTCTTTTGAATTTGTCACTCCAAATATTGTGGTTCAGATACCAGATTAAACTTATGCTTTTGGATACA ACCTTTTAGAAATTAATGTTTAGTATGCTTGTATCCTATCTTTAATTCATTACGACGATGCTACGGTCACAGGATAATAC AGTGGGGGTACTCTAAATAGATAACAACAATGTAACTAAAGAAAAATGAGGAATATAAATGAAAAAAAGGTAGCAACTTG ACATCAGGCTATACACAAAATGACACAATAACTTCCTCATAAGAAAGGCACACTGTAGTCCCATTTAGAAGAGTGAACTC AAATCCTATTAGCCTTGCAATTTTGTATTTTGAATTTATATCAACCAGATTTTGTGAATTAAGCAGACTCGTATTAAATT AAAAGCCTTACTTTGTCCATCACCTTACAAAATGCAGTAAAGATCATAACTGTAAGTTATATCTTCATAAGAAACCAAAA ATAATAGAAATTACATCATCATGTATATCCATAGGTTTTACACAAGCCTCATATATCCTGCCTCTTCCTGTGCTTCATTA TGTCATTCTCAAATTGTCAACTTTAGCAAGAAAATGGATAGAAATTTGGCAGACATCACTGCATAAATTATCAATGAACA TGTTCTGTTTCATGAACTGGCATTTGCTTGACCCTGATTTGTTTGATCACATGGCAGGTGGATCTAGTGGTGATATTAAG GATGTAAGCAAACTTGAAGGTAAATAAAACTATCTTTTTATTACTTAAAATCTTATGCTTACAGAGCAATTTCCTTGAAA AAAATCCTATGTGAGTATATGAATCTGCAGTCCTAAATCACTAAATGCCTTACTTCCACCAAGTATGGTTAATGTTTTAG GTGTCTCCTTTTATTTTTGAATTACGTGGTATGCCTCCAATGAGTATGCACATAATGAGGTATTGTTTTTTGAACTTGCA ATACCACCTTGTAACTTGTTTTTGAGGCGGATGATGTGGTCTATAACTAGAGAAGAGTTGTTTGTTTTTGACTCATGATT GACATGTCATGTGTACATTGATAGGATTCTGCATCTTGTTTTACCTTTTGTTTTCTATTTCGGCTTTCAATGACTAAATT AGTTATATTGACTGTGCTTGTGCTATCTATACACCATTGGCATAGCTTCGTGCTCTAATGATAGAAATTATGGCTAGTTT GGCTTTTGGTAAATCACCACCTAAGATTTCATTACCATGCTCTCTTCCCTCATCTTCCTCTCTCTTTACTATGAATTATT TGGATCAGATTAGGAACTTTTAAGGCCTTGGGCAACTCTCCAGTCCCATAGAAGACAAGGAAAGAGATAGTAATCCAAAT ATAGAACTCTAGGGTGAGCAAGTGTGCAAAATCTCTCATAACATTTTTTTTACTACATAGGCGGTACAGACTTTTATTTG GGACTTGATACTGTCTCATCATAATCTGTATGTTAGACATTGTTAGTGTCTTGTGTTTATTTCATAAGTTAGTAGAAATT CATTGGCTTCTAAAGTTCTAATGTATGACTGTTGATTTCAAATTTGATTAAGTACAATTCAGTAGCAACTTAAACAGCCC TAGTGTGTCTATGCAGGTGGTGCATCATGCACTTCAGAAGTCCTACATGCATTGCCCATTTTGAAGAAAGCATATGGAGA CAGCATGCGAAAGGTTTTGCATGTTGGCCCAGACTCTTGTTTGCTGGTACCGAGTTTGTTAGAAGAGGATACTGAGGTTT GGGGAATAGAACCATATGAATTAGATGATGTAAGTGCAAAGTGTAAAGGTCTTATACGCAGGGGCATTGTGCGTGTTGCT GACATTAAGTTTCCTCTACCCTACCGTGCAAAGTCATTTTCTCATGTCATTGTGTCAGATGCATTGGATTACTTATCTCC GAGGTACCTGAATAAAACCCTGCCAGAGTTGGTGAGGGTATCCACTGATGGTGTTGTTATCTTTTCAGGTACATTCCCTT GTGAAGCTTCTGTTCAGTGAACTTAGTCTTGAACTGGATTTATGTTAGGCATTCATATTAGCGTATTTATTTAGCTACTT AGGGCTATATACACCAAGGCTAGCCAGCCACAGTAAATTGATGATCGTAGCAGTCTTTCATTGCTTATACAAATAATGCT CTTTTTACTTCTATTTTTCACAAGTACTGTTGGATATGATAGAAAGTTAATTACTATTATGCTCGTGCTTTCTTTCTCCT GATATCTCATTTTCGTGCGTAGGTTATCCAGGTCAGCAGAGAGCTAGAGGTGGAGAAGTGTCCAAATTTGGCCGTCCCGT AAGTGACTATTACTTATTGAATTTGTTATCTTTCATTCTTTTTAACAACATAGGTATGTGAGCTACCTGTAGCTTAGCTT TGATGTTGTTCTATCTAATTGGAATGTGTTGATAATTCATGTGAGATTCACAAGATCACTTGGGTTCCACACTCAATCTA GTGAAACCCGCTAACTAATAAGAGTGTGTCGGAAAGGATGTTAGTATTGCTAGCAATTCTTTTGATATTGATAATAATGG GAAGTAAGAAGTTATGAACTAGTGTTTTATCTGCTACCGGAATTAATATCAATAAAACTACTCTTGATTATGTGGGATTT GTTCTTTGCTTAATTTGTTTATCTTTTATGAAGGCCAAACTGCGGAGCGCATCTTGGTGGATAAGGTTTTTCGTTCAGAC AGGATTAGAAGAAAATGAAACTGCTGGAAAGAAGTTTGCACAGGCTTCAGCCAAGAAGGCATACAAGCCAGCATGCCAAG TTTTTCACCTCAAATCATACCCCTGAAATGTTTACTGTGTCCTGTTTTACCCACAGACTTCATGGTAATAAACCATGGTG GCGAGGCTCGCACTTAGAGCACCCGAAGGGTATAAGTTCCATACTTTATGTTTGATATTATAGTCTTATTTGATCCGATT ATGAAAAGATATCAATTTTTTTCTTTTTTTACATTCCCATTGTAAACTATTTTGTCTTTATAATTTTCCATAATTTTACG TTTCCACACTGGCTCTTTGTTTCTTAGTATTCATTATTTAGAAAACATGCCAATTTGACATGTTCAGTAACTATTACAAT TAGTTTCTACTTTACCAGATCCTTGACTATTTGTGGTAATCTGTGTTGGCTTGTTATATTTTCATACAGTGATAGATGTT GTCTTTAATGTGACAATAATTTTGTTTAAGCCTGTTTTTTAGCAAGTTTTACCGAGTTGCAATCACTTTTCTACTAGAGA TGGGCATGCCATGTAAAAACCAAAGCAAACTACATCTATTTTCAAGTCCCTAATAATTCTTCTGGCCGAGAAACATAACT ATACGTAAAAATCTAAATCATCTACCAAGGATAGCTGAG
CDS sequence (LotjaGi6g1v0345400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAGGAGGCCAGTAAATCCTTCACGCCGGTTAGCTGATGGTGGAAGTATATCATTTGTGTCCTCTATCAAGGCTAA ATCTCAGAACTCTCCTCTACTATCTATTGGGCTTGTTATAGTGGGTGCAATCCTCCTCATTGGTTTTATTTATAGCAGCT CAGGTGGATCTAGTGGTGATATTAAGGATGTAAGCAAACTTGAAGGTGGTGCATCATGCACTTCAGAAGTCCTACATGCA TTGCCCATTTTGAAGAAAGCATATGGAGACAGCATGCGAAAGGTTTTGCATGTTGGCCCAGACTCTTGTTTGCTGGTACC GAGTTTGTTAGAAGAGGATACTGAGGTTTGGGGAATAGAACCATATGAATTAGATGATGTAAGTGCAAAGTGTAAAGGTC TTATACGCAGGGGCATTGTGCGTGTTGCTGACATTAAGTTTCCTCTACCCTACCGTGCAAAGTCATTTTCTCATGTCATT GTGTCAGATGCATTGGATTACTTATCTCCGAGGTACCTGAATAAAACCCTGCCAGAGTTGGTGAGGGTATCCACTGATGG TGTTGTTATCTTTTCAGGTTATCCAGGTCAGCAGAGAGCTAGAGGTGGAGAAGTGTCCAAATTTGGCCGTCCCGCCAAAC TGCGGAGCGCATCTTGGTGGATAAGGTTTTTCGTTCAGACAGGATTAGAAGAAAATGAAACTGCTGGAAAGAAGTTTGCA CAGGCTTCAGCCAAGAAGGCATACAAGCCAGCATGCCAAGTTTTTCACCTCAAATCATACCCCTGA
Protein sequence (LotjaGi6g1v0345400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRRPVNPSRRLADGGSISFVSSIKAKSQNSPLLSIGLVIVGAILLIGFIYSSSGGSSGDIKDVSKLEGGASCTSEVLHA LPILKKAYGDSMRKVLHVGPDSCLLVPSLLEEDTEVWGIEPYELDDVSAKCKGLIRRGIVRVADIKFPLPYRAKSFSHVI VSDALDYLSPRYLNKTLPELVRVSTDGVVIFSGYPGQQRARGGEVSKFGRPAKLRSASWWIRFFVQTGLEENETAGKKFA QASAKKAYKPACQVFHLKSYP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 260 | 260 | 7.6E-148 | – | |
| PANTHER | 1 | 260 | 260 | 7.6E-148 | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| TMHMM | 33 | 55 | 23 | - | – | |
| Phobius | 33 | 51 | 19 | - | – | |
| Phobius | 52 | 261 | 210 | - | – | |
| Gene3D | 72 | 250 | 179 | 8.8E-7 | – | |
| SUPERFAMILY | 89 | 232 | 144 | 3.26E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0345400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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