Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0349200 |
| Transcript ID | LotjaGi6g1v0349200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protoheme IX farnesyltransferase; TAIR: AT4G33625.1 vacuole protein; Swiss-Prot: sp|Q83NK0|COXX_TROW8 Protoheme IX farnesyltransferase; TrEMBL-Plants: tr|F8SVN5|F8SVN5_9FABA Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0349200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66185606..66187685) extracted from Lotus japonicus Gifu genome v1.2.
ATTGGGACACGTGTCATTTTCTCGTTATTGAGAATAGATTGCCTGCCTTGAATGGTAGGTGAAAAAAGAATCCCGCCAAG GAGAAGCAAAATGTAACACACAGAGTTGGAATTGGAATCGAAAGATAAGAGAAACTAGTTCAAATTCAAAGGTAGATGCA TGCATGTTGGAGCAGTACTGAAAATGAGTAGTAGAGAGGGAGAGGAAGAGAAGGTGCCTCTGCTATCTTCGAGCAGAGAA AGAGGAAGAACCAGAAACAGAGGAGACTCGATTTCAGACCTTTTCTTGAGAGTGTGTAGGTTCTTCAGCTTCATCACCTC TTTTGCTGCCATTCTCTGCGTAACCGTCAACGTCCTCTCTGCAATTCGCTCCTTCAAACACGCTTCCCATTCTGATGTAT ATATATCTTCTTTTATTTATTTTTCTAATTCTAATATATATGTTACCTTCTTATTCATTTTTTAGCAATTTGTTTGATTA TTTGAGCTTGCCTTTCAGTTCTTTGATGGCATATTTCGGTGTTACGCGGTTCTCATTGCGTGTTTCGTTGTTCTGGCTGA GACCGAATGGAAATTCATCATCAACTTCTGGCAGGTTAATTCATAACTTTCATGCATGGCCATCTTTAATTTGATTGATT TGTTAAGAATTATATATTGAATCATTGAAAATTTGAAATGGTAGTTGAACTTGTTAGAAATTTGGGTATGATAATCCTGG ATAACTTTAAAGAATCGTGTTCGTACACTTTCCGAACAAAGTATTTCGACCCTATTTTTGCCTGGGTTCACGAAATCCTT GTTGGGATAATTCTTGAAGAACAATTTGTTTCTGGCAATAGAGAACGGATCAGGAAAGTAGAGAAAATGTATATTTTGAT TATTTTCTGTTTTCTGTATCTAAAACTGAGGCCAAATGACTCCTTATATTGGAGTGTGTTTCAGAAACCGAAAAACGGTT AATTACAGCTAGGGGCGGAGCCCCTTGGAACCCCGCAATCTATTCGCGGTCAATTATGCGTTGGCTCAACAAGCGTGCAC TCTGCACTACTCTAACTCGTTTCCGAGCTTAACGCGTAATCGCATCGGCCTACAATAAATCACATTACTACTAAAATCCA TTGATGATACTAAAATCACCAACAGAAGTTACTGGATATTGTTCTTGAGTTGCTCTTAGTTTTCTATGATTTTACTGCTC AACTTTACAGGTTTTGGAGTATTGGGTAGGCAGGGGTATGCTGCAGATCTTGTAAGTCATTAAACTAAAACATTTTAGCT AGATTCTAAGTTAATAACTTTTCTTTGGTGCATTCATTTGATAAAATTAGTTAGTTATATGCTAGTAATTACTTATTATA CTGATTAACTAAACTGTTAATTGGCTACAATGTAGTGCTGCAGTGATGACCAGGGCTTTCCCTGACTATGGTGCTAGGGA GCCAAAAAAGCTTGTTATTCTTCAGAACATAGCGTGCTATATGCTTCTTGCTTGTGGTTTACTTTATGTTGTCTCGGTAA GATTATTAATTGATCAAGAGAGGAAATTTAATTATCTGCATAATGTAAAATGTGTAATTATTCTGCTTTACTTGCTTTCC CATTTGAAGGGAATCCTTTGCATTGGTTGTTTAAAACGTTATCGGCAGAAGCAAGAGATCACTAGAGAACAAGCAGCCAA GGATCTTGAGGTACATAATTATGCTTTTATTAATTTTGACTAACTTTATCTCAATTTGATCCAAATTAATTTTGCCTTTT ACTTGCTTGTGTGTGAACATTTCCCAGGAATTGGAACGACGTAAAGGAGAACTTGAACAATTACTTATGACTGAATAGGT TTTGAAGCGTTTGAAAGTAGTGTTGAAATTGTTGTGAAGAAAAAATCCATATACAACAACCTATGTATGAATATCTTTAT GCATGATTTGTCTTGTTGGTTACTATAATATGGTTTCTTAACCTAAAATCAACTGAATTGAATTCTACAAAGTATAGTAT ATTTTTATGCATGATTTGTATTATTGGGTTGAAAAATTACGAAATTTCACGTTGATGGAAATGAGGAGATATAAGCTTTG
CDS sequence (LotjaGi6g1v0349200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGTTGGAGCAGTACTGAAAATGAGTAGTAGAGAGGGAGAGGAAGAGAAGGTGCCTCTGCTATCTTCGAGCAGAGA AAGAGGAAGAACCAGAAACAGAGGAGACTCGATTTCAGACCTTTTCTTGAGAGTGTGTAGGTTCTTCAGCTTCATCACCT CTTTTGCTGCCATTCTCTGCGTAACCGTCAACGTCCTCTCTGCAATTCGCTCCTTCAAACACGCTTCCCATTCTGATTTC TTTGATGGCATATTTCGGTGTTACGCGGTTCTCATTGCGTGTTTCGTTGTTCTGGCTGAGACCGAATGGAAATTCATCAT CAACTTCTGGCAGGTTTTGGAGTATTGGGTAGGCAGGGGTATGCTGCAGATCTTTGCTGCAGTGATGACCAGGGCTTTCC CTGACTATGGTGCTAGGGAGCCAAAAAAGCTTGTTATTCTTCAGAACATAGCGTGCTATATGCTTCTTGCTTGTGGTTTA CTTTATGTTGTCTCGGGAATCCTTTGCATTGGTTGTTTAAAACGTTATCGGCAGAAGCAAGAGATCACTAGAGAACAAGC AGCCAAGGATCTTGAGGAATTGGAACGACGTAAAGGAGAACTTGAACAATTACTTATGACTGAATAG
Protein sequence (LotjaGi6g1v0349200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHVGAVLKMSSREGEEEKVPLLSSSRERGRTRNRGDSISDLFLRVCRFFSFITSFAAILCVTVNVLSAIRSFKHASHSDF FDGIFRCYAVLIACFVVLAETEWKFIINFWQVLEYWVGRGMLQIFAAVMTRAFPDYGAREPKKLVILQNIACYMLLACGL LYVVSGILCIGCLKRYRQKQEITREQAAKDLEELERRKGELEQLLMTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 47 | 47 | - | – | |
| MobiDBLite | 8 | 31 | 24 | - | – | |
| MobiDBLite | 9 | 31 | 23 | - | – | |
| PANTHER | 20 | 207 | 188 | 2.5E-85 | – | |
| PANTHER | 20 | 207 | 188 | 2.5E-85 | – | |
| Phobius | 48 | 71 | 24 | - | – | |
| TMHMM | 48 | 70 | 23 | - | – | |
| Phobius | 72 | 82 | 11 | - | – | |
| TMHMM | 80 | 99 | 20 | - | – | |
| Phobius | 83 | 101 | 19 | - | – | |
| Phobius | 102 | 112 | 11 | - | – | |
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 113 | 133 | 21 | - | – | |
| Phobius | 134 | 152 | 19 | - | – | |
| TMHMM | 149 | 171 | 23 | - | – | |
| Phobius | 153 | 173 | 21 | - | – | |
| Phobius | 174 | 208 | 35 | - | – | |
| Coils | 177 | 204 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0349200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…