Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0349600 |
| Transcript ID | LotjaGi6g1v0349600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein DnaJ; TAIR: AT5G64360.2 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|P0CB24|Y4865_ARATH Uncharacterized protein At4g38065; TrEMBL-Plants: tr|V7BTK1|V7BTK1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0349600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66208905..66211157) extracted from Lotus japonicus Gifu genome v1.2.
AGGTCAAGGTTGACGTCATGACCACTCATCACCGCCATGTGATACTCGTTTGCATTCGAGTCACTCAATGACTAAAATAC CCCTACCCTACACCCCCGCTCCTTATCCACCGCTGTCCTTTCTGGTCCATTTACATCCCCTTCTGGTCAAGGTCAAGGGT AATACCATCCTACTACTGAGTCACTCACTTCACTCCAAAACAAAACAAAAAATTGAAGAAAATGGAGGGTGGTTACGGCG GCAACCGGGCGGAAGCGGAGCGGTGGCTCTACACCGCGAACAAGCTCCTCAGCGCGCGTGACCTACACGGCGCCCGCTCC TTCGCGATCCGGGCTCAGGAATCCGACCCGAGGTTCGAGGCCACGGAGCTCCTCCTCGCCGTCATCGACACCCTCCTCGC CGGCGAAGCTCGGATCAAGGACCTCGTCGACTGCTACGCCATCCTCCAAGTCGTCCGCTACACTGACAACATTGAGTTCA TCGCCGCCCAGTACCGCCGTCTCGCCAGCCTCCTTGACCCTCACCACAACCCATTCGCCTTCGCCGCGCATGCTTTCTCC CTTGTCCAAGACGCATGGGCTCTCCTATTCAACCCGACTAAGAAAGCATTCTACGATAACCAGCTCCGATTCATCACTGA ACCACCGCAACCTCATCATGCTCCACCTCCACCACCACCACCACCACCATCTATTCATCTACACCCCGTTCAGAACCATG TAAACCCTAGCTCCGATGATGTTCCGGTGGTGGTTGCTGATGCTGTGGAAGAAGACAACAGGCCGAGTCAGGACAATGTA ACTGAGCCGACTCAGCCGAGTGAGAACGATGGGAGGACTTTCTGGACGGCGTGTCCTTACTGTTATGCTATGTTTGAGTA CCCTTCGGTGTATGAGGAGTGTACTCTTCGGTGCCAGAGTTGTCGGAGGGGTTTTCATGGGGTGGCGGTACGGTCTCTGC CGCCGGGTTTGACTGAGGAAGAAGGTGGGTTGACCTCGTTTTGCAGTTGGGGGTTTTTCCCTGTTGGGTTTTCTGGGGAT TTGAAGAGTATTGGTGGGGCTTCTTCAGAGTGGAACCCTTTTTCTCCGCTGTTTCCTTGTGCTTTGAATGGGGGTGGTTC TTCATATAGGGGAAGGAAGAGGGGTCCTAAGGTTTATTACTATGATGAGGCGGCTGTGGAGTCTGAGGAGCTTTCAGATT CGACGGAGGAGGAGGATTCCGATGACGGAGATGATGGGGATGACGATGGGGGCTGGCGGAGCAGGCTGAGGAAGAGAGGG AGGAGGAAAGGCTCTTCTGCTGCTCGTACTGGTGTTAAAAGCAATGGGAAGGCTAGGAAGGGGAATCATAATGATAGTGG GGCTGGTGATGCCAATGCCAATGCCAGTGTGGGTAATGGTGAGGTTTCTGGTGGTGCCTCTGCGCTGCCGCCTGCGGTTC CCAATTCTGTGAGGCCGGAGTCTAGCAAGAGAGGCGCTTTGGGTGGTTCGAGGAGGAGGGGTGCTGGGAACTTGGGCAAG TTGGATTTGAATGTGGAGTTTAGCAATGAGGTGGAAGAGCCTGCCCATGGAGTCAGGGAAGGGAATGGGACTGGACATGC AGAGGATAATATTGAGGGGATTGGATTTTTTGAGGGGCTTGATGAGTTCATCCTTAGTAGCTTGCCCATTCTCAATGTTG TTGCAGATGATAAGGTTAAGGGTCATTAGTACAGTCGGCAAATAGACGCCTGCTTTTTGTTGTTGTTGTTGATGATGTAG ATGTTACTTGTATGTCAGGTAGTTCTTGTTGCACAAAGATGATACTCAGATTTTGTGAATTCTTCTCATTGTTAGACTCA TAATGATTCGACTTTGCAACAATGCCTCCCTAGTTTTATTTTGCCAATGCACTGTATGCAAAACATTTATCTGATGCATT TAGGTGTTTGTTGTGCTCATGTTTTGTTGATTCATGTTGCTGATCCTAATTCTTACCTACTGCCATTTTTTTTCCCTGTA ATAATGCTTCTTCCCTTGTGTAGGCTCTTTGGTATTTATTAGGCTTTGCTCTCTTGTTTTGTAAGGGAAAGATTTTTTGA AAATAAGTTGTAGCTTGCTAATTGTTTCTTTTTGTTCAAATGTTGTGAGCTGCAAAAGTTGAAGGAAACTGAAAATCTCT CAAAAGCCGCAAATGTTGTAGTTTTAGATTGTGATCTCACCCATTTATTTTGTTAGTTTTGCCTTTGTCTACTCTACTTT TACTTCATTTCAT
CDS sequence (LotjaGi6g1v0349600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGTGGTTACGGCGGCAACCGGGCGGAAGCGGAGCGGTGGCTCTACACCGCGAACAAGCTCCTCAGCGCGCGTGA CCTACACGGCGCCCGCTCCTTCGCGATCCGGGCTCAGGAATCCGACCCGAGGTTCGAGGCCACGGAGCTCCTCCTCGCCG TCATCGACACCCTCCTCGCCGGCGAAGCTCGGATCAAGGACCTCGTCGACTGCTACGCCATCCTCCAAGTCGTCCGCTAC ACTGACAACATTGAGTTCATCGCCGCCCAGTACCGCCGTCTCGCCAGCCTCCTTGACCCTCACCACAACCCATTCGCCTT CGCCGCGCATGCTTTCTCCCTTGTCCAAGACGCATGGGCTCTCCTATTCAACCCGACTAAGAAAGCATTCTACGATAACC AGCTCCGATTCATCACTGAACCACCGCAACCTCATCATGCTCCACCTCCACCACCACCACCACCACCATCTATTCATCTA CACCCCGTTCAGAACCATGTAAACCCTAGCTCCGATGATGTTCCGGTGGTGGTTGCTGATGCTGTGGAAGAAGACAACAG GCCGAGTCAGGACAATGTAACTGAGCCGACTCAGCCGAGTGAGAACGATGGGAGGACTTTCTGGACGGCGTGTCCTTACT GTTATGCTATGTTTGAGTACCCTTCGGTGTATGAGGAGTGTACTCTTCGGTGCCAGAGTTGTCGGAGGGGTTTTCATGGG GTGGCGGTACGGTCTCTGCCGCCGGGTTTGACTGAGGAAGAAGGTGGGTTGACCTCGTTTTGCAGTTGGGGGTTTTTCCC TGTTGGGTTTTCTGGGGATTTGAAGAGTATTGGTGGGGCTTCTTCAGAGTGGAACCCTTTTTCTCCGCTGTTTCCTTGTG CTTTGAATGGGGGTGGTTCTTCATATAGGGGAAGGAAGAGGGGTCCTAAGGTTTATTACTATGATGAGGCGGCTGTGGAG TCTGAGGAGCTTTCAGATTCGACGGAGGAGGAGGATTCCGATGACGGAGATGATGGGGATGACGATGGGGGCTGGCGGAG CAGGCTGAGGAAGAGAGGGAGGAGGAAAGGCTCTTCTGCTGCTCGTACTGGTGTTAAAAGCAATGGGAAGGCTAGGAAGG GGAATCATAATGATAGTGGGGCTGGTGATGCCAATGCCAATGCCAGTGTGGGTAATGGTGAGGTTTCTGGTGGTGCCTCT GCGCTGCCGCCTGCGGTTCCCAATTCTGTGAGGCCGGAGTCTAGCAAGAGAGGCGCTTTGGGTGGTTCGAGGAGGAGGGG TGCTGGGAACTTGGGCAAGTTGGATTTGAATGTGGAGTTTAGCAATGAGGTGGAAGAGCCTGCCCATGGAGTCAGGGAAG GGAATGGGACTGGACATGCAGAGGATAATATTGAGGGGATTGGATTTTTTGAGGGGCTTGATGAGTTCATCCTTAGTAGC TTGCCCATTCTCAATGTTGTTGCAGATGATAAGGTTAAGGGTCATTAG
Protein sequence (LotjaGi6g1v0349600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGGYGGNRAEAERWLYTANKLLSARDLHGARSFAIRAQESDPRFEATELLLAVIDTLLAGEARIKDLVDCYAILQVVRY TDNIEFIAAQYRRLASLLDPHHNPFAFAAHAFSLVQDAWALLFNPTKKAFYDNQLRFITEPPQPHHAPPPPPPPPPSIHL HPVQNHVNPSSDDVPVVVADAVEEDNRPSQDNVTEPTQPSENDGRTFWTACPYCYAMFEYPSVYEECTLRCQSCRRGFHG VAVRSLPPGLTEEEGGLTSFCSWGFFPVGFSGDLKSIGGASSEWNPFSPLFPCALNGGGSSYRGRKRGPKVYYYDEAAVE SEELSDSTEEEDSDDGDDGDDDGGWRSRLRKRGRRKGSSAARTGVKSNGKARKGNHNDSGAGDANANASVGNGEVSGGAS ALPPAVPNSVRPESSKRGALGGSRRRGAGNLGKLDLNVEFSNEVEEPAHGVREGNGTGHAEDNIEGIGFFEGLDEFILSS LPILNVVADDKVKGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 491 | 491 | 3.0E-149 | – | |
| PANTHER | 1 | 491 | 491 | 3.0E-149 | – | |
| Gene3D | 60 | 143 | 84 | 2.2E-9 | ||
| SUPERFAMILY | 64 | 137 | 74 | 3.93E-11 | ||
| SMART | 69 | 127 | 59 | 8.5E-4 | ||
| Pfam | 70 | 132 | 63 | 3.7E-9 | ||
| CDD | 70 | 122 | 53 | 1.62683E-5 | ||
| ProSiteProfiles | 70 | 135 | 66 | 9.205 | ||
| ProSitePatterns | 112 | 131 | 20 | - | ||
| MobiDBLite | 140 | 165 | 26 | - | – | |
| MobiDBLite | 142 | 160 | 19 | - | – | |
| MobiDBLite | 183 | 202 | 20 | - | – | |
| MobiDBLite | 319 | 434 | 116 | - | – | |
| MobiDBLite | 319 | 340 | 22 | - | – | |
| MobiDBLite | 380 | 394 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0349600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…