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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0350000 |
| Transcript ID | LotjaGi6g1v0350000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidylprolyl isomerase; TAIR: AT5G64350.1 FK506-binding protein 12; Swiss-Prot: sp|O04287|FKB12_VICFA Peptidyl-prolyl cis-trans isomerase FKBP12; TrEMBL-Plants: tr|I3S3Y9|I3S3Y9_LOTJA Peptidylprolyl isomerase; Found in the gene: LotjaGi6g1v0350000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66230424..66232651) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTGCAACACCTACCCATTCCATTAAAATGTTGAGAGACACATGTCTCAAGTATAAGATAAAAGACCCCCTGTCCCTG ATTCCCTGAAAGGCAACAGAGAGCAGTAGAAGGAAGAGAAACCAAAGAAACGAGATCGTCGTCGTCGTCGTCGTCGTCGA TGGGAGTGGAGAAGCAACTGTTGAGGCCCGGAACCGGTCCCAAGCCTGTTCCCGGTCAGAACGTGACTGTTCACTGCACT GGTTTCGGTTCGTTTCCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCCCTTTCTTTCTATCATAAACCCTAAATCACTCA ACTAACTCTTGTGTTGTTTGATTTTCATGATCAGGGAAAAACGGTGACCTTTCTCAACAGTTTTGGAGCACAAAGGATCC TGGCCAGAAACCTTTCACTTTCAAAATCGGCCAAGGTTCTGTTATCAAAGGTATGTATATATATATATATATGTATCCCT TGATTGATTGTTCTGATCATACAAGAGATTTTATGTTAAACTCCAACTATCTGTGCCTGTAGGATGGGATGAAGGTGTGT TAGGCATGCAAGTTGGTGAAGTTGCTCGTCTTCGGGTACTACATCTGTTACTGTTAACTATTCTCTGCTTGCTGTTCTTT AATTCATATGCATATGAAAATTTATAGCTCTGATAATGAATTAATGATATCAAAGTATCCTAGGGGCATGAATTTTACAC ATTAAGCAAAATTAACTATGGCTATTTGGAGGAGATAGTGCAAATATTATTAGGGGAGTGAATACAACATTTGAACACTA TTTTATTGAGGAAATTTTCTCTGCTAAGGAGTAAGGATCTTTGTTGTGATTCAGATTTTCACTTTGTTGGAATATCCATG ATGGTTATTTACTTCGGAACATGTATGTTTTTGTGTGCATACTTCAATCTCTTCTGATTTTACATATAACAGAGCAGTTT TATGCCATACGAACTATCCGGTTGGTGCTGAATATTCCCTTAGCTGTTTGTTTGTTTTTCTAATGTGTGTGACTGGAGGG TTTTCAGTTTGAATGAACCCTGTTATTCATGTTGTTGGTATTTTCTTGCAGTGCTCCCCTGATTATGCTTATGGTGCTGG TGGCTTTCCTGCTTGGGGAATACAACCAAACTCTGTCCTGGATTTTGAAATTGAAGTCTTAAATGCGCAATGAAAACCTT GTTAGCCTGTCTAATGAATAAGGATTATGATGAGTATCCTCCATTTACATGGACATGTACTATTGTATCCCCACTTTGTG AGTGGTATCTATAATGGCTACTTAGTTGAGTTGTTTAACTGAAATACTAAATAACACTTCAGTGATCTCAATCAAACTAA TATTAGATTGGTAGCCTTCACTTTATTTCTTCATCATTTCTCTACCAATTTGCTGATCAGTACTATTTGGCAATGCATGA TCTATAGTTCCTAATTCCTAGTAAAAGGTTGTGGAGGGAGGGTTATTGTTGATTCTGAAGAATCTCGTTCTTCACCATGA TTCACAAGTTAATTATCTGACCCCGTAATAGGCATTTTTGCTTTTGGGATTTGCACTTCGTTAATAGAGCTATTGCTAAA TACAAACACTTTGTGCTAGTTGCATGGCAATAGCCAACATTGTCTGAGTTTCTAGCATTGTGCTATTTAAGGCAGCGATC CTTTGGAGTTCAACCATTTTGTCTTGAGCTATATAAGGAGGTAAGCAGTTGAAGACTCCCTAAAATTTTACTCACTTTAG CCCTGAACATTTTGGATTGTATGCAATGCTTATCCTTTGAGCATATCGGTGCATTTTGTCTCAGCTCATCAACAACCTAG GTCTTTGTCTGCTTTGGATATTTTGTCGGAACCTGGATCTTTCTGCTGAGGTTACTTCTTCCCTTCCCCTACTCACCATG CTTTAACTTCTCAGCCTAGTTGACAAAATACAAATTTGCATATTTCCAGTTATAGGGTAGACACAAGACAACTCCCCTAT GAGCACGTATGGCTATGTAAAATTTATTTTCACAAATGAGTCCCCAACCAAGTTAACTAAATAACGATATACAATAACAA CAAAAGCCTTATCTTCAATATGGATCAAACTAAATAACAACACAGCAAGCTAAAATATGATTTTGTCCGATTTTGTTAAA AATGAATGACTATAGTACGGCTACACCATCACCTTAAGTATTTCTATCAAGATAAAAAAATGTGTTGA
CDS sequence (LotjaGi6g1v0350000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGTGGAGAAGCAACTGTTGAGGCCCGGAACCGGTCCCAAGCCTGTTCCCGGTCAGAACGTGACTGTTCACTGCAC TGGTTTCGGGAAAAACGGTGACCTTTCTCAACAGTTTTGGAGCACAAAGGATCCTGGCCAGAAACCTTTCACTTTCAAAA TCGGCCAAGGTTCTGTTATCAAAGGATGGGATGAAGGTGTGTTAGGCATGCAAGTTGGTGAAGTTGCTCGTCTTCGGTGC TCCCCTGATTATGCTTATGGTGCTGGTGGCTTTCCTGCTTGGGGAATACAACCAAACTCTGTCCTGGATTTTGAAATTGA AGTCTTAAATGCGCAATGA
Protein sequence (LotjaGi6g1v0350000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVEKQLLRPGTGPKPVPGQNVTVHCTGFGKNGDLSQQFWSTKDPGQKPFTFKIGQGSVIKGWDEGVLGMQVGEVARLRC SPDYAYGAGGFPAWGIQPNSVLDFEIEVLNAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 112 | 112 | 1.0E-35 | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| SUPERFAMILY | 2 | 110 | 109 | 6.87E-32 | – | |
| PANTHER | 2 | 112 | 111 | 7.9E-59 | – | |
| PANTHER | 2 | 112 | 111 | 7.9E-59 | – | |
| Pfam | 14 | 109 | 96 | 8.8E-24 | ||
| ProSiteProfiles | 19 | 112 | 94 | 24.172 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). |
Expression pattern of LotjaGi6g1v0350000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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