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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0352500 |
Transcript ID | LotjaGi6g1v0352500.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phosphatase 2C family protein; TAIR: AT1G34750.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q9S9Z7|P2C10_ARATH Probable protein phosphatase 2C 10; TrEMBL-Plants: tr|A0A151T0P9|A0A151T0P9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0352500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66456861..66459615) extracted from Lotus japonicus Gifu genome v1.2.
ATTCCCTTGCTCTGCACTTATGTTACATGCCCTTTGGTAATCAGCCATGTACTTTCTTCTCTCCCATTTCTTAAGATTTC TTGTACTTATATGTCAAACAGTCGATTCTTTTGTTACTGTATTTTAACTTCCATCATTTCAGGCGGGTGGAGGACGTTCG TCATCTAGCTCTGGGAAGGGCAAAAGCTATCTGTGCCCTGTTAAGTATGGCTTTAGCCTAGTTAAAGGTAGGGCAAACCA CCCAATGGAGGATTTTCACGTTGCAAAAATCATCCAGAACAAAGGGCAAGAGTTAGGACTTTTTGCTATATATGATGGAC ACTTAGGGGACAGTGTGCCCGCCTATTTACAGAAGCATCTCTTTTCCAATATCTTGAAGGAAGTAAGTTCTTGAAACAAA CTTCAACATGTCATGTATTTATTATTACCTCAATCACATTCAATTCCCTGAAAAAAGTTCCTCCATTTTTTTTCTATTAT ATGTTGCATATAGTATGAAGAGTGAATACTTAGTTTTTGTTCCCAGCTTCCCATACTTTGTTTTTTCATGATCCTAACTG CATGATATTTGCGGATGGTATGGTTCTATTTGAAGAATTAAGGGAAATGTTAATTCTAAACTTGAGATTTGGAGAAAAAC TTTGGAATCTAAGGGTTTTCGCTTAAGCATGAGCAAGGCAGAGTATATACATTTCAGTAAGACAAATGTTGGAAATAAAA ATTGATTATGTTTAACCCAGAAACTACTATCTCTAACTTCTAGCAGAGATAGTACCCCAAAATGACTCCAAAACATCTAT ATTGTCCTCCAAAATTGATTTTACTCTGCCTAATTGATTCTAAGCTTCCCCAATGGGAAACCAAACACACAGTTTGAATC TTTATAATGCCTTTTGATGGAAATTGCATCTTAAATTATGAGTGGTTGTTCTAGGAGGATTTCTGGACTGATACAAACAG TTCCATCATTAAAGCTTATGAGACAACAGATGAGGCCATTCTTTCTCACAGTTCTGATTTGGGGGTAGGAGGATCAACTG CAGTTACTGCCATCCTTTTAAATAATCAGAAGTTATGGGTAGCAAATGTTGGAGATTCACGAGCAGTTCTGTCTAGGAGA GGGGAGGCCATACAAATGACAATTGATCATGAGCCCAATACTGAAAGGGGCATCATCGAAAACAAAGGCGGCTTTGTCTC AAACATGCCAGGTTCTTTTATAAGCCTTAATCAGTTAATGTCTATCACTCTATTGAGATATTGCTTACATGTCCAATGCT GGATTTTCTTGCCATCCTATGTGATATCGAGAATGTCAAGTGCTTGGGGGAAGGGTGTTTATGAATTATGAGTCTCATTT GCATTTTCAAAGAGGGAGGGAAAAGGAGACTCATCTCACTTTGTTTAAAGAAATGGTTTGCTAACATCAAGTTGGAGGCT TATGCTAAGTTAACCTTTCTTTATTGGTCGAAATTTGCGCGTGTCTTAGTTGAAATTAATTCTTTATACCCCTTGTTGTA CATAGGGCATGCATATGATAACTACCACTTATTTATAACAAGCTTGAAAGTAAAATTGCCATCTCTCTGCTTGGTTTAGG TTTTTCAGAAAAGTGAAGGATAGGTTCATTGAAAGCTATACATTTTTTTTATTCTTCCAAAATACTTTTGCGTGTCCTCT GCAATAGCAAGATCTTCTAACAGAATTCAGAACTTAATTTGACAAGTTTGATAACTTGTATGGTATCTAGGCTGGCACAT AGTCTTATGTCTCTTATGGAGATTAATCATGCTAAAGTGTTTAACACTTCTGGCTATTTAGTGTTTAAAATCTTTTAACT TAATTTTAACTTCAGAGTCTGCCACCAGCCCTTTTAGTCCCTCTCCATATGTGATGGTGATGAATTTGTAATTTCAGAGC CTGTCACTACTACATTTGTAATTATATAATGCTTGTAATCAACCAATCACTTTGATATAGATTGTTCAGAAACATTTTCT AAAATATCTAATTATCTTTGGAAGTCATGGACCAAATGGGAATCCATTTTTCACCAATTTTTAACCATTTTTAAAATGCT ATCAGTGGGATATGCTACTTATTTTGAGTACCTATTGCCTCATGATTCCTAATTAGTGATTACCATATGCAAGTGTCATC ATCACATACACTAACATAAGTGCTGTAACTTTCTATGCCTAAGGTAAGGTTTAACCGTTTAAGCAACAATTCAATTAGCC ATAGCTTCCTATGCTAGGATAAGGTTTACATAGCTGGTAGATACTCAACATCAAAACTAAGTTTGGCAAAATTTAATGTG AGTCATTGTGTATTTTGTGATACTTTTTAATTTGTGGATGTGTTTATATCAGGAGATGTTGCGAGAGTGAATGGGCAGCT TGCTGTTTCACGGGCATTTGGAGACAAAAACCTAAAGTCACATTTGAGATCCGATCCCGACATTCGTCACGACGAAATTG ACTCAGATACTGAGTTTTTGATACTTGCTAGTGATGGTCTATGGAAGGTTTATCCCTGAATCCAACTTTCTGTCCATTAT TTCTTACAAATATTTATTTTGCATTGAAATTCCACTCATTGGTTCATTCCATTCCAGGTAATGGCAAACCAAGAGGCAGT TGATATTGCAAAAAAGATCAAAGATCCACAAAAGGCAGCAAAACAATTAACTGCCGAGGCATTGAACAGAGAGAGTAAAG ATGATATTTCCTGCATTGTGGTTCGTTTCAAGTGA
CDS sequence (LotjaGi6g1v0352500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGATTTTCACGTTGCAAAAATCATCCAGAACAAAGGGCAAGAGTTAGGACTTTTTGCTATATATGATGGACACTT AGGGGACAGTGTGCCCGCCTATTTACAGAAGCATCTCTTTTCCAATATCTTGAAGGAAGAGGATTTCTGGACTGATACAA ACAGTTCCATCATTAAAGCTTATGAGACAACAGATGAGGCCATTCTTTCTCACAGTTCTGATTTGGGGGTAGGAGGATCA ACTGCAGTTACTGCCATCCTTTTAAATAATCAGAAGTTATGGGTAGCAAATGTTGGAGATTCACGAGCAGTTCTGTCTAG GAGAGGGGAGGCCATACAAATGACAATTGATCATGAGCCCAATACTGAAAGGGGCATCATCGAAAACAAAGGCGGCTTTG TCTCAAACATGCCAGGAGATGTTGCGAGAGTGAATGGGCAGCTTGCTGTTTCACGGGCATTTGGAGACAAAAACCTAAAG TCACATTTGAGATCCGATCCCGACATTCGTCACGACGAAATTGACTCAGATACTGAGTTTTTGATACTTGCTAGTGATGG TCTATGGAAGGTAATGGCAAACCAAGAGGCAGTTGATATTGCAAAAAAGATCAAAGATCCACAAAAGGCAGCAAAACAAT TAACTGCCGAGGCATTGAACAGAGAGAGTAAAGATGATATTTCCTGCATTGTGGTTCGTTTCAAGTGA
Protein sequence (LotjaGi6g1v0352500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDFHVAKIIQNKGQELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFWTDTNSSIIKAYETTDEAILSHSSDLGVGGS TAVTAILLNNQKLWVANVGDSRAVLSRRGEAIQMTIDHEPNTERGIIENKGGFVSNMPGDVARVNGQLAVSRAFGDKNLK SHLRSDPDIRHDEIDSDTEFLILASDGLWKVMANQEAVDIAKKIKDPQKAAKQLTAEALNRESKDDISCIVVRFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 234 | 234 | 1.7E-129 | – | |
CDD | 1 | 234 | 234 | 7.68114E-86 | ||
SMART | 1 | 232 | 232 | 5.4E-72 | ||
Pfam | 1 | 227 | 227 | 1.5E-56 | ||
ProSiteProfiles | 1 | 234 | 234 | 49.253 | ||
PANTHER | 1 | 234 | 234 | 1.7E-129 | ||
SUPERFAMILY | 1 | 235 | 235 | 1.44E-65 | ||
Gene3D | 1 | 235 | 235 | 4.9E-74 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. |
Expression pattern of LotjaGi6g1v0352500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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