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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0354400 |
| Transcript ID | LotjaGi6g1v0354400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT5G02600.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q8LDS4|NAKR1_ARATH Protein SODIUM POTASSIUM ROOT DEFECTIVE 1; TrEMBL-Plants: tr|V7CNZ1|V7CNZ1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0354400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66638856..66641583) extracted from Lotus japonicus Gifu genome v1.2.
ATCCATTTGACCTTCTATAGTTTGTTGCTAATGCTATGATTAATAATCTAGCTACCTTCAACTCTTTATGCTTATATTGT TAGTGGAATGCTTGTCATTTTTTTTGGGAAGATGTGATTATATCAAGGCTTAAAGACATTAAAACCCACCACTAAAGTGT GTGTCGATTGAAAATGTATGTGTTGACGTATAATTAATAAATTACTCATCATGATTTTTTGCTCAACTCATTTGATAATT CCACTCAGCTCATTTGATAATTCCACATGCATCCAACCTAGATATTTTTTGTGATAGAGTTCTCTAGAAAAAGTTGTGCA CCATATTATCAAGTGGATACAAACATATCCTCAAAACAGGAAGATGAAGCCTTTCTGGTTCTAACCTCCCTCATACCCCA CCCTCATCCCAAATACCCCAACAAGAAAAAACTAAAAAAATGCAAAATGTTCAGCAAAATTCAAATAAAACAAGAACAAC CCACGTTCATTCTGTTCTACTAATCTGATTTTCTCTGCTAGCATGTCATTATTTTTTACCTATAGCCAAAAAGGGGCTAG CTATTGTCAATTTCTTAGCATTAACTGCTGAAAATGACAAGATTTTTGTTATGATCATAGATATATGCATAATAGATAAA ATGACAAAAAGATTCCTTTTTGTCAGAGAACCCATTGTTAGCTAAATCATAATGACACCGTCTCTCTTCATTCTCTAGTT ACTTTCTCCTATTTCTCTCAATTAGAAAACTAGTATTGGCACTTGAACATTACACATTCACAACATCCACACACTTTTTG ATATCCCCCAAGAAAAATTCACTGTGAATGATGATGAGCCAGAAAAGCAGTCACAAAAAGTTGAGGAATGGTTTCATGTG TCACTCTCGAGCTTCAACTGCAGTGTGCATGAGTACCCGAGATCCTCGGTCTATTGTTGTTGTGCCTAAGAGACATGACA GAACAATTTTTGTTGATGATGATCATACCAGGTTGATCAACTATGCCAACAAATACTCCAAACTTGTTCAATCTCGCAGC AGGTCCACTTCATCTGACAGAGAATCTGTCTCTAGAGTACCAAAGATTAAGCAGAGGAACCTAGATCAAGTTGAAGAAGA GAATGAACCACCAAAGGAACTTCAGAAAACACCAACAGACAATGTCTTCCAGGTTAGATTTGCTTACACTTTTTCCTTTA CTAGGTGAGATGCAAATGACATTGTAGCATGATCATTGATATATCACATCATATGTAACTGGACATTGTAACATGAATGC TTTCACCATTTACATGTAGGTAGTTGTGATGCGAGTTGCTATTCATTGTCAAGGGTGTGCTGGTAAAGTGAAAAGGCATC TGTCTAAGATGGAAGGTAATTAACCATGATTCCATGAATGCTACATTACATAGTATTCATCTAAAAAAACAAAAGAACTT AAAGAAATAATTTGTCTGACATATAGTCATATACATTATACATTTTCATAATCTGATCATAACATTAAGCACCGTAAAGC AAAATTCTCAGGTTCGAGCGATGCAACTGAGTTAAAAACTTGTAGCAATTGCTTTGCTACTTGAGTACTAGTGGAGTATA TTTCTGATCTAGACAAAAAAAAAAAAACTTGAAATAGCATTTATATATAGGAATAATTCTCTAATGGTGTTGATATAGTG TGAATAGCTTGTTTGCATCAACTTCTCTTTACTCAAAATCAATTCCGGCACCCAAAATTTACTCACATTAGGTTCTCTCT ATAATTAATTTTGACTTCATAATCAATTGTAAAAAGATTTCCAAACATGTAAAAAAAGATAGTGCAAATTTTCACATATT TTTTTCCAATTAACTATAACTGTTCTACATTGAATCAAACTTTTGGTTTTGGGATTAAGGCTAATGATAGTTTGTAGTGG TAACTAACATGTTATTAAATGAATGATCACAGGAGTGACATCATTCAATATAGATGTAGAGTCGAAGAGGGTGACAGTAA TGGGTCACATTTCTCCAGTTGTAGTCCTTGAGAGCATTTCAAAGGTGAAAAGGGCAGAGTTCTGGAATGGTTGAAGACTT AAAGCAATCAAGATCAAGAGTACCTTAAATTAAATGTGTAGCAGTGGAGATGCAGAGAGCCAGAGTCAAATTTTCAGAAA CTTGTCTTTGTCTTCGGATCTGAGAATTACCTTCTATATATGATGGTGGACCTGGTGGTCCTCGTAGGTAGAATCAAATT ATAGAATGAGACAAGTAGACTTAGAATTACTACAATTTGAATTCATAATATAGCACTTAGTTTCAATATAGCAGATGATT AGTAGACTTCATTGTTATCTCCATTCCATGCTTATTATGTTTTCAGAGTGGTTTTCATGTTCAAAACAAACATTTCTAGT CTGACTCAATGAATTAAGTTTTAAGTGAAATTAATTCATTCAGCCGTTCATCTCTAATACTATTCTATGCAGATAAATCT ATTTCAATTTTTTGCATTACCATTGGTAGTATAAAATCAAACTTGAAAAGCAAATGAATAGATAGAAAAAATTTGTAATA AAAATTGGAAACTCACATGAATAATTTGTTACTTCATCAAATGACAATGCAAGTTCGAATCCTGTATACATAGGAAATTA CTTGCTCTCACAAAGAGGTGGAGACACCCGATGAAATACAAAAAGAAAATGACAATGCAGGGGTTGCTTGTATGATAATG GTTAAAAT
CDS sequence (LotjaGi6g1v0354400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATGAGCCAGAAAAGCAGTCACAAAAAGTTGAGGAATGGTTTCATGTGTCACTCTCGAGCTTCAACTGCAGTGTG CATGAGTACCCGAGATCCTCGGTCTATTGTTGTTGTGCCTAAGAGACATGACAGAACAATTTTTGTTGATGATGATCATA CCAGGTTGATCAACTATGCCAACAAATACTCCAAACTTGTTCAATCTCGCAGCAGGTCCACTTCATCTGACAGAGAATCT GTCTCTAGAGTACCAAAGATTAAGCAGAGGAACCTAGATCAAGTTGAAGAAGAGAATGAACCACCAAAGGAACTTCAGAA AACACCAACAGACAATGTCTTCCAGGTAGTTGTGATGCGAGTTGCTATTCATTGTCAAGGGTGTGCTGGTAAAGTGAAAA GGCATCTGTCTAAGATGGAAGGAGTGACATCATTCAATATAGATGTAGAGTCGAAGAGGGTGACAGTAATGGGTCACATT TCTCCAGTTGTAGTCCTTGAGAGCATTTCAAAGGTGAAAAGGGCAGAGTTCTGGAATGGTTGA
Protein sequence (LotjaGi6g1v0354400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMMSQKSSHKKLRNGFMCHSRASTAVCMSTRDPRSIVVVPKRHDRTIFVDDDHTRLINYANKYSKLVQSRSRSTSSDRES VSRVPKIKQRNLDQVEEENEPPKELQKTPTDNVFQVVVMRVAIHCQGCAGKVKRHLSKMEGVTSFNIDVESKRVTVMGHI SPVVVLESISKVKRAEFWNG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| PANTHER | 14 | 178 | 165 | 6.6E-51 | – | |
| PANTHER | 14 | 178 | 165 | 6.6E-51 | – | |
| MobiDBLite | 67 | 108 | 42 | - | – | |
| MobiDBLite | 76 | 105 | 30 | - | – | |
| CDD | 113 | 171 | 59 | 8.97208E-12 | ||
| SUPERFAMILY | 113 | 173 | 61 | 7.85E-14 | ||
| Gene3D | 114 | 176 | 63 | 2.3E-16 | – | |
| ProSiteProfiles | 115 | 172 | 58 | 11.356 | ||
| Pfam | 119 | 171 | 53 | 3.2E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi6g1v0354400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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