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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0355100 |
| Transcript ID | LotjaGi6g1v0355100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein,; TAIR: AT5G64530.1 xylem NAC domain 1; Swiss-Prot: sp|Q8GWK6|NC104_ARATH NAC domain-containing protein 104; TrEMBL-Plants: tr|I1KUF3|I1KUF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0355100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66710082..66711719) extracted from Lotus japonicus Gifu genome v1.2.
CCAACTCACTTTTGGTGATCCCGTTTCTTGAGCAAGTACCTATCCATCACGTTCCGTTATCCGCAGCCTTGGTTGCTTGG TGTTGAGTGCTTCCGTGCCAACAAAACTTATCAAATATTTGATGAGATGTATGTGTTTTGTAATTGTACCTGATTAATGC CATCTTCTATTTTACGTTAGACCCTAATATATCTATCTCTCTATCTATTCATTATACCTTCTTTGCACTATAAATGCCTT CCTTTCCAAACCAACCTTGACCAACACCACCTTCACTACCTCTATAGCTACTTCTCTTGTTGCTTTAATGGGAGATAACA ATGTCAACCTTCCGCCCGGATTTCGATTTTATCCAACAGATGAGGAGCTTGTAGTTCATTTTCTTCATAGAAAAGCAGAA CTTCTACCTTGCCACCCCGATGTCATCCCTGATCTTGAGCTCTACTCATATGATCCATGGGAACTTGATGGTACCATTCT TTGTTTTTAAATTTTCAGCTTTCAATTACAGCTCTTTGTATCATTGTTGTTAGATCATAGATTGCCACTATCTAGGAAAT TGGTCTTTGGTGTATATTAATTGAAAAATGCTTAGTGTCACACTGTTAATTTTGTCACATCAAGCATTTATTTTCATTTT CAGTGGAAGTTAACCCCCTAGCCCTCCATGATTTTGCATTTTCATGTTTGCTGTTGTTTTTTCCTTCGTAAATGATTAGA GGTGAAGATTTCTCTACCTTATATAATTACTTATTTAGTCATATTTCTAGTCAATATGAGAACCATGTTGATAAATTCTT GGTGCGGATGTACATGGGCAGGTAGAGCTTTGGCAGAGGGAAATCAATGGTACTACTACAGCAGAAGGACACAAAATAGG GTCACTGAGAATGGATATTGGAAGCCAACAGGAATTGAAGAGCCAGTGATTTCTAGCACAAGCAATAAGAGAGTTGGCAT GAAGAAATATTTCATGTTCCATTTGGGAGAAGCCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTT CCTCCAGCAGCAGATCATCCAAAAGAAAATCACAACAAAAAACAGTTAGTATATAATACTACATGAAAATCTTATGATAA GTTGAAAACTATTGTATATATCTCTGATTTGGTTGCTAATTTTTTTTGTTAATCCCTTTTTGTTTGATTCAGGATTTTAA TAAATGGGTGATATGTCGTGTTTATGAGTGCAAAGAAGATGGTGATGATGGAACAGAGCTTTCTTGTTTGGATGAAGTTT TCTTGTCACTTGATGATCTTGAAGAAATAAGCTTACCAAATTAGCCTATGCAAGTGATTGATTTAGCTAGATAGCTGCAT TATCTAAATGGGATAATTAATTAAGCTGATTAATTGCTTGTGATCATTATCATCCGTTATTAATTTACTGGCAGTAGTTA ATTAAATCCAGTAGCAAGTGTAGCTGCCATTGTAACAGTGAAATGGCTAGAACTAGATTTTCCACAGCAGCCTCTCAAGT GGGGCACTATGTGAGATTCATGTTCAACCAATATGTAATATGACGTTATGCTTCCAAAGATCCCATTCACTACCATAGTC ACTTCAAATTTTGTTCTCTCTATCTATAGCACTGCTGA
CDS sequence (LotjaGi6g1v0355100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGATAACAATGTCAACCTTCCGCCCGGATTTCGATTTTATCCAACAGATGAGGAGCTTGTAGTTCATTTTCTTCA TAGAAAAGCAGAACTTCTACCTTGCCACCCCGATGTCATCCCTGATCTTGAGCTCTACTCATATGATCCATGGGAACTTG ATGGTAGAGCTTTGGCAGAGGGAAATCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGAGAATGGATAT TGGAAGCCAACAGGAATTGAAGAGCCAGTGATTTCTAGCACAAGCAATAAGAGAGTTGGCATGAAGAAATATTTCATGTT CCATTTGGGAGAAGCCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTTCCTCCAGCAGCAGATCAT CCAAAAGAAAATCACAACAAAAAACAGATTTTAATAAATGGGTGATATGTCGTGTTTATGAGTGCAAAGAAGATGGTGAT GATGGAACAGAGCTTTCTTGTTTGGATGAAGTTTTCTTGTCACTTGATGATCTTGAAGAAATAAGCTTACCAAATTAG
Protein sequence (LotjaGi6g1v0355100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDNNVNLPPGFRFYPTDEELVVHFLHRKAELLPCHPDVIPDLELYSYDPWELDGRALAEGNQWYYYSRRTQNRVTENGY WKPTGIEEPVISSTSNKRVGMKKYFMFHLGEAKTNWIMQEYRLSDSASSSSRSSKRKSQQKTDFNKWVICRVYECKEDGD DGTELSCLDEVFLSLDDLEEISLPN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 185 | 182 | 1.5E-102 | – | |
| PANTHER | 4 | 185 | 182 | 1.5E-102 | – | |
| SUPERFAMILY | 5 | 153 | 149 | 1.19E-45 | ||
| ProSiteProfiles | 8 | 155 | 148 | 41.976 | ||
| Pfam | 9 | 123 | 115 | 1.3E-29 | ||
| Gene3D | 17 | 160 | 144 | 3.1E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0355100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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