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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0355100 |
Transcript ID | LotjaGi6g1v0355100.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | NAC domain protein,; TAIR: AT5G64530.1 xylem NAC domain 1; Swiss-Prot: sp|Q8GWK6|NC104_ARATH NAC domain-containing protein 104; TrEMBL-Plants: tr|I1KUF3|I1KUF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0355100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66710389..66711405) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAGATAACAATGTCAACCTTCCGCCCGGATTTCGATTTTATCCAACAGATGAGGAGCTTGTAGTTCATTTTCTTCA TAGAAAAGCAGAACTTCTACCTTGCCACCCCGATGTCATCCCTGATCTTGAGCTCTACTCATATGATCCATGGGAACTTG ATGGTACCATTCTTTGTTTTTAAATTTTCAGCTTTCAATTACAGCTCTTTGTATCATTGTTGTTAGATCATAGATTGCCA CTATCTAGGAAATTGGTCTTTGGTGTATATTAATTGAAAAATGCTTAGTGTCACACTGTTAATTTTGTCACATCAAGCAT TTATTTTCATTTTCAGTGGAAGTTAACCCCCTAGCCCTCCATGATTTTGCATTTTCATGTTTGCTGTTGTTTTTTCCTTC GTAAATGATTAGAGGTGAAGATTTCTCTACCTTATATAATTACTTATTTAGTCATATTTCTAGTCAATATGAGAACCATG TTGATAAATTCTTGGTGCGGATGTACATGGGCAGGTAGAGCTTTGGCAGAGGGAAATCAATGGTACTACTACAGCAGAAG GACACAAAATAGGGTCACTGAGAATGGATATTGGAAGCCAACAGGAATTGAAGAGCCAGTGATTTCTAGCACAAGCAATA AGAGAGTTGGCATGAAGAAATATTTCATGTTCCATTTGGGAGAAGCCAAAACCAATTGGATAATGCAAGAATATCGTCTA TCAGATTCTGCTTCCTCCAGCAGCAGATCATCCAAAAGAAAATCACAACAAAAAACAGTTAGTATATAATACTACATGAA AATCTTATGATAAGTTGAAAACTATTGTATATATCTCTGATTTGGTTGCTAATTTTTTTTGTTAATCCCTTTTTGTTTGA TTCAGGATTTTAATAAATGGGTGATATGTCGTGTTTATGAGTGCAAAGAAGATGGTGATGATGGAACAGAGCTTTCTTGT TTGGATGAAGTTTTCTTGTCACTTGATGATCTTGAAGAAATAAGCTTACCAAATTAG
CDS sequence (LotjaGi6g1v0355100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGATAACAATGTCAACCTTCCGCCCGGATTTCGATTTTATCCAACAGATGAGGAGCTTGTAGTTCATTTTCTTCA TAGAAAAGCAGAACTTCTACCTTGCCACCCCGATGTCATCCCTGATCTTGAGCTCTACTCATATGATCCATGGGAACTTG ATGGTAGAGCTTTGGCAGAGGGAAATCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGAGAATGGATAT TGGAAGCCAACAGGAATTGAAGAGCCAGTGATTTCTAGCACAAGCAATAAGAGAGTTGGCATGAAGAAATATTTCATGTT CCATTTGGGAGAAGCCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTTCCTCCAGCAGCAGATCAT CCAAAAGAAAATCAGATTTTAATAAATGGGTGATATGTCGTGTTTATGAGTGCAAAGAAGATGGTGATGATGGAACAGAG CTTTCTTGTTTGGATGAAGTTTTCTTGTCACTTGATGATCTTGAAGAAATAAGCTTACCAAATTAG
Protein sequence (LotjaGi6g1v0355100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDNNVNLPPGFRFYPTDEELVVHFLHRKAELLPCHPDVIPDLELYSYDPWELDGRALAEGNQWYYYSRRTQNRVTENGY WKPTGIEEPVISSTSNKRVGMKKYFMFHLGEAKTNWIMQEYRLSDSASSSSRSSKRKSDFNKWVICRVYECKEDGDDGTE LSCLDEVFLSLDDLEEISLPN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 181 | 178 | 1.6E-99 | – | |
PANTHER | 4 | 181 | 178 | 1.6E-99 | – | |
SUPERFAMILY | 5 | 149 | 145 | 5.23E-46 | ||
ProSiteProfiles | 8 | 151 | 144 | 42.246 | ||
Pfam | 9 | 123 | 115 | 1.3E-29 | ||
Gene3D | 17 | 156 | 140 | 6.0E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0355100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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