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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0356400 |
| Transcript ID | LotjaGi6g1v0356400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin; TAIR: AT3G12110.1 actin-11; Swiss-Prot: sp|P0C539|ACT2_ORYSI Actin-2; TrEMBL-Plants: tr|A0A1J7GPF5|A0A1J7GPF5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0356400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66786202..66787923) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCGACGCCGAGGACATTCAACCTCTTGTTGTTGACAATGGAACTGGAATGGTCAAGGTTAGTCAATATGCTTTATG ACTTGATTCCTGCTTATTGTGAGCTATGCAAGAGTGCTTGCAATAAGCTAGTATAAAGGACAGGCTTATAGTGTCTGATG ATGTAATGTATATCTTTTTCCCCATGTTTGCAGGCTGGGTTTGCAGGTGATGATGCTCCTAGGGCTGTGTTCCCCAGTAT TATTGGGCGACCTCGTCATACTGGTGTGATGGTTGGGATGGGTCAGAAGGATGCTTATGTGGGTGATGAAGCTCAATCAA AAAGGGGTATACTCACCTTGAAGTATCCTATTGAGCATGGTATAGTCAGCAACTGGGATGATATGGAGAAGATTTGGCAT CACACATTTTACAATGAGCTTCGTGTTGCTCCTGAAGAACACCCTGTTCTTCTTACCGAGGCACCCCTCAATCCCAAGGC CAACAGAGAGAAGATGACCCAAATTATGTTCGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGT CTCTGTATGCCAGTGGACGTACTACAGGTTTGTATCTGTGGTTGAATTTGGTTTTACTATTTTTTGACTATGTGACTTCA ATTTGATCAGGTCAACTTGATATATGTTTTAATGCTGTAAGTTGGGTAATTTCTGATATGATGAATATAAGGCTGTCTTA GAGATTAGATGCAGCTCTAGTTTGAAACTATGGAACGCTGTTTTAAGTTCTACATAATTGGTTTTATTTATACCTTTAGA CTAGTTGAACTATATGCACTAAGCACGGTTTTACATATATTAGGATTGGATATAGATGCAATTTTACACTCATTCCTTCT CGCTTAAAATGTTTCCTGGTATGTGTTGTTACTTTGGTACTGAATTGTGGGTTATGTAAATAGGTATTGTGCTTGATTCT GGTGATGGTGTGAGCCACACGGTGCCCATCTACGAGGGATATGCCCTTCCTCATGCAATTCTTCGTTTGGACCTTGCTGG CCGTGACTTAACAGAGTACTTAGTGAAAATCCTTACTGAGAGAGGATACTCCTTCAGTACCTCTGCCGAAAAGGAAATTG TCCGTGATGTGAAGGAGAAACTAGCATATGTGGCCCTTGATTTTGAGCAAGAAATGGATACTACTAAGAGTAGTTCTGCA GTCGAGAAGAGCTATGAATTGCCTGATGGACAGGTTATTACAATAGGTGCTGAGAGATTCCGGTGCCCAGAAGTACTCTT CCAGCCTTCTCTAATTGGTATGGAAGCTCCTGGAATCCATGAAACTACATACAACTCCATCATGAAATGCGATGTTGATA TCAGGAAGGACCTGTATGGAAATATTGTGCTTAGTGGTGGGTCTACCATGTTTCCTGGAATTGCTGATCGAATGAGCAAG GAAATCAGTGCTCTTGCTCCAAGCAGCATGAAAATCAAGGTGGTTGCCCCTCCTGAGAGGAAGTACAGTGTCTGGATCGG TGGTTCTATCTTGGCATCACTTAGTACCTTTCAACAGGTTTGCGCTCATTCTTTCCTCTGTTTTTTTTTTTTCTTTCCAA TTTTGTCCTGATCAGTATGTGGAAGTCATTTGTGCTTTCTTGGTTCACTTGTGCAGATGTGGATCTCTAAGGGTGAATAT GATGAATCTGGGCCAGCTATCGTTCACAGGAAGTGCTTCTGA
CDS sequence (LotjaGi6g1v0356400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGACGCCGAGGACATTCAACCTCTTGTTGTTGACAATGGAACTGGAATGGTCAAGGCTGGGTTTGCAGGTGATGA TGCTCCTAGGGCTGTGTTCCCCAGTATTATTGGGCGACCTCGTCATACTGGTGTGATGGTTGGGATGGGTCAGAAGGATG CTTATGTGGGTGATGAAGCTCAATCAAAAAGGGGTATACTCACCTTGAAGTATCCTATTGAGCATGGTATAGTCAGCAAC TGGGATGATATGGAGAAGATTTGGCATCACACATTTTACAATGAGCTTCGTGTTGCTCCTGAAGAACACCCTGTTCTTCT TACCGAGGCACCCCTCAATCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATGTTCGAGACTTTCAATGTGCCTGCCA TGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGGTATTGTGCTTGATTCTGGTGATGGT GTGAGCCACACGGTGCCCATCTACGAGGGATATGCCCTTCCTCATGCAATTCTTCGTTTGGACCTTGCTGGCCGTGACTT AACAGAGTACTTAGTGAAAATCCTTACTGAGAGAGGATACTCCTTCAGTACCTCTGCCGAAAAGGAAATTGTCCGTGATG TGAAGGAGAAACTAGCATATGTGGCCCTTGATTTTGAGCAAGAAATGGATACTACTAAGAGTAGTTCTGCAGTCGAGAAG AGCTATGAATTGCCTGATGGACAGGTTATTACAATAGGTGCTGAGAGATTCCGGTGCCCAGAAGTACTCTTCCAGCCTTC TCTAATTGGTATGGAAGCTCCTGGAGAAGGACCTGTATGGAAATATTGTGCTTAG
Protein sequence (LotjaGi6g1v0356400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDG VSHTVPIYEGYALPHAILRLDLAGRDLTEYLVKILTERGYSFSTSAEKEIVRDVKEKLAYVALDFEQEMDTTKSSSAVEK SYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGEGPVWKYCA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 275 | 272 | 3.9E-190 | – | |
| PANTHER | 4 | 275 | 272 | 3.9E-190 | ||
| Pfam | 5 | 273 | 269 | 9.4E-98 | ||
| SUPERFAMILY | 6 | 155 | 150 | 2.88E-66 | ||
| SMART | 7 | 284 | 278 | 1.2E-122 | ||
| CDD | 10 | 183 | 174 | 4.28341E-19 | – | |
| Gene3D | 10 | 139 | 130 | 1.9E-133 | – | |
| PRINTS | 28 | 37 | 10 | 8.7E-57 | ||
| PRINTS | 51 | 62 | 12 | 8.7E-57 | ||
| ProSitePatterns | 55 | 65 | 11 | - | ||
| PRINTS | 63 | 85 | 23 | 8.7E-57 | ||
| ProSitePatterns | 106 | 118 | 13 | - | ||
| PRINTS | 117 | 130 | 14 | 8.7E-57 | ||
| Gene3D | 140 | 275 | 136 | 1.9E-133 | – | |
| PRINTS | 142 | 161 | 20 | 8.7E-57 | ||
| SUPERFAMILY | 149 | 275 | 127 | 3.42E-45 | ||
| Gene3D | 182 | 274 | 93 | 1.9E-133 | – | |
| PRINTS | 238 | 254 | 17 | 8.7E-57 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0356400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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