Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0357000 |
| Transcript ID | LotjaGi6g1v0357000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubby-like F-box protein; TAIR: AT1G25280.1 tubby like protein 10; Swiss-Prot: sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8; TrEMBL-Plants: tr|I1MDS7|I1MDS7_SOYBN Tubby-like F-box protein; Found in the gene: LotjaGi6g1v0357000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66874267..66877429) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCATTCCGCAGCATAGTTCGTGACGTGAGGGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAGACTTAC TGGCCATCATAGAGGAAAATCTCATGGCTCGGTACAGGATTTGCATGACCAGCCTCTAGTAATTCAAAATAGTTGCTGGG CAAGCTTACCCCCAGAATTACTATTTGATGTCATTAGACGGCTAGAGGAGAGTGAGAATACATGGCCTGCTCGAAAGCAT GTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGATATTGTTAAGAGCCCGGAGTTCTCTGGCAA GCTTACATTCCCTGTGTCCCTGAAGCAGGTTAGCATCATTACTTTTCTCTTAGTGTCTCATTCTTTGTTGAACAATCTGT ATATAGTGGATGCAACAAAACACTTATCTTTTGCTCCTTTCACTTTTCAGCCTGGGCCACGCGATGGGATCATTCAATGT TTTATCAAAAGGGATAAATCTAACTTAACATACCACCTGTTCCTTTGCCTAAGCCCCGGTAAGCACTCTAAATATACATG TAGTTGTCCCTTTGGTTTATATGGTTGTGTCTGGTTGCTTCTGTTATGACCCTGTACATTTTATCTGATGTGATGTTCAA TTTTTAAACACATGAACACTTTTGCATATGTTGATTGTGGCTGCCCGCTGCCTGTGGGTAACTATTTGCATGGGTATTTG ATTTCGGGCCTATATGGGATGATATTTATGATACTGTAATTTGTGCTGCCGTAGTTTCGACTGTAGGACTGCAGTCTTGG GATGGGCTTTACAAGTTTCACCTCACATTTTCCCATCTTTTGTCCAAATCAGCAATCAAACGTTGCTATGAGCATGAAGC CGGTTAAATCCATAATGGTTGTTTGCCCTGTGTTGTATTTATTTCCCTTTATGATTGATATCAGGAGTTTAGGGTCATCT TGTTTGATAGCCATTTAGTTGGGGGCAAGTCTAACAGACTTTTTTCCGTTTTATTTGAATTCCGTTGGCTATATTCCTTG TAATTTTTTAAGGCTGTGGAGGTTTTCTATTTTATAGTCAGCTTAGTTTTTTTGTTATTATTTTGTCAGGTGGAGAAAGT TTATCAGTTGCATTTTTTGATGCTTCATTGTTTTTCCTGGTGTGTGGTGGGTTTGAAGTTTTTAGATGTTGACCAGATAA GAATCACAAATGGTCTTTGCAATGGTTAGGGGTGAAACTATGGAGTTATTTTTAGAGTTTGAAATGTTCCTTCATTCTAT GAAATTAAGATTTGTCTGAGCAGTCTTGTGAAGTGTGTAATAATTTCCATCTATCATTAGTTGCTGCTTGGAACGGCTTG AATCTGTGTGTCTATGACATAGTAAACATAAATCTGTTCATTACCATGCGCTAATGCTTGCGGAACTCATTTCATATTTT CCTTTTCTTTTCTGTTTACTTTGACTTTTGCAGCTCTATTAGTTGAAAATGGAAAATTTCTCCTTTCTGCTAAGAGGACA AGGAGAACAACTTACACCGAGTACGTTATTTCCATGGATGCTGACAACATTTCTAGATCAAGTAATACTTACATTGGAAA GCTGAGGTGAGTTTACTGGTTACAAGAGTTTCATCCTCAGTTACTCTTTGACTATATTAAAGAAACTTCTTTCCGTTTCC TACATATAAAACCTGCTAAAATACTATGATTGTTAGCTCTCGAGTTAAGCCAGCTCTGAAACATGTGTATGTTAGGAAGA GGACCAGAGCTGTGTAATAGGAGTATCTCAGGGACTTAATTGTAAATAAGTCAGAATATACAGCTGGCAGTTAGCTATGT TAGAACAGACTATAAATAGCTAAAACTTAGAGAGGAAGAAGCATCTTTGGTAGTTAGAACTGGAACTGGTTGTGGAACCA GGAATTGATTCATTGGGAATCAATAGCAAACCCTAGATTCGAGTTCTTCCTCAATTCCCCAAATTACTTGTACAATTGAT CTCTGACTTGGAGTCTCAGTGATTCTCGGTTAGGGATTCTACTTCTGTAATCGTTTTCTACCATCAATAATACCAGTTTC ATCAATGATCTAGGGTTTAGACTGTCACAATGCAGTCCCAACTCCAAACGTATAACAGCAGAATAATGATTTTTTTATGA ATTTCAGTCAGGTTGCAGATGTAAACCTTTTGAACTTGACATATTTTAGATGCACATAACTATTTAGAAATATATTGTGA CAGATTTTTCAGAAAGTAGGATCATCTTCCGTTTTTTTTTTTCTCTGTTAAGGTAATAGTTTAGGTTCTTACTCCATCAT CAATTTTCAATTAATTCATTCCCATATATATTCTAGTTTGTGTTATTTATTTAGTATTTTATGTTCTATTTTTACATTGC GTCTTCACATTTATGAAAGTTTATTTTACATTGATTTGCCAGATCGAACTTTCTCGGTACAAAATTCATCATCTATGACA CACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGGAAGACAAGCCGCAGGTTTTATTCCAAAAAGGTC TCGCCTAAGGTCCCATCTGGTAGTTACAACATAGCTCAGGTAACATATGAATTAAACGTGCTTGGGACTCGAGGCCCAAG GAAAATGCACTGCATTATGCACTCAATACCAGCCTCAGCACTTGATGCAGGCGGCACCGTTCCTGGCCAGCCAGAGCTCC TTCCTCGTTCCCTGGATGACTCATTCCGGAGCATCTCATTTTCAAAGTCTCTAGATCATTCTATCGAGTTCAGCAGCTCA CGATTTTCTGAGATCGGGGGATCCTGTAACGAGGATGATGATGGCAGCAAGATGAGACCCTTGGTTCTGAAAAACAAGCC ACCGAGATGGCATGAACAGTTGCAATGTTGGTGCCTTAATTTCCGGGGACGAGTAACTGTTGCGTCTGTTAAAAACTTTC AGTTGATTGCTGCAACCCAGCCACCAGCTGCAGGTGCACCTACACCATCTCAACCAGCTCCACCAGAGCACGACAAGATT ATTCTGCAGTTTGGCAAAGTGGGGAAAGACATGTTCACCATGGATTATCGGTATCCTTTGTCTGCATTCCAAGCTTTTGC AATATGCTTAAGCAGCTTTGACACCAAACTAGCTTGTGAATAG
CDS sequence (LotjaGi6g1v0357000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATTCCGCAGCATAGTTCGTGACGTGAGGGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAGACTTAC TGGCCATCATAGAGGAAAATCTCATGGCTCGGTACAGGATTTGCATGACCAGCCTCTAGTAATTCAAAATAGTTGCTGGG CAAGCTTACCCCCAGAATTACTATTTGATGTCATTAGACGGCTAGAGGAGAGTGAGAATACATGGCCTGCTCGAAAGCAT GTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGATATTGTTAAGAGCCCGGAGTTCTCTGGCAA GCTTACATTCCCTGTGTCCCTGAAGCAGCCTGGGCCACGCGATGGGATCATTCAATGTTTTATCAAAAGGGATAAATCTA ACTTAACATACCACCTGTTCCTTTGCCTAAGCCCCGCTCTATTAGTTGAAAATGGAAAATTTCTCCTTTCTGCTAAGAGG ACAAGGAGAACAACTTACACCGAGTACGTTATTTCCATGGATGCTGACAACATTTCTAGATCAAGTAATACTTACATTGG AAAGCTGAGATCGAACTTTCTCGGTACAAAATTCATCATCTATGACACACAGCCTCCATACTCTTCTGCCCATATATGCC CTCCTGGGACTGGGAAGACAAGCCGCAGGTTTTATTCCAAAAAGGTCTCGCCTAAGGTCCCATCTGGTAGTTACAACATA GCTCAGGTAACATATGAATTAAACGTGCTTGGGACTCGAGGCCCAAGGAAAATGCACTGCATTATGCACTCAATACCAGC CTCAGCACTTGATGCAGGCGGCACCGTTCCTGGCCAGCCAGAGCTCCTTCCTCGTTCCCTGGATGACTCATTCCGGAGCA TCTCATTTTCAAAGTCTCTAGATCATTCTATCGAGTTCAGCAGCTCACGATTTTCTGAGATCGGGGGATCCTGTAACGAG GATGATGATGGCAGCAAGATGAGACCCTTGGTTCTGAAAAACAAGCCACCGAGATGGCATGAACAGTTGCAATGTTGGTG CCTTAATTTCCGGGGACGAGTAACTGTTGCGTCTGTTAAAAACTTTCAGTTGATTGCTGCAACCCAGCCACCAGCTGCAG GTGCACCTACACCATCTCAACCAGCTCCACCAGAGCACGACAAGATTATTCTGCAGTTTGGCAAAGTGGGGAAAGACATG TTCACCATGGATTATCGGTATCCTTTGTCTGCATTCCAAGCTTTTGCAATATGCTTAAGCAGCTTTGACACCAAACTAGC TTGTGAATAG
Protein sequence (LotjaGi6g1v0357000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSHGSVQDLHDQPLVIQNSCWASLPPELLFDVIRRLEESENTWPARKH VVACAAVCQSWRNMCKDIVKSPEFSGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKR TRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNI AQVTYELNVLGTRGPRKMHCIMHSIPASALDAGGTVPGQPELLPRSLDDSFRSISFSKSLDHSIEFSSSRFSEIGGSCNE DDDGSKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAAGAPTPSQPAPPEHDKIILQFGKVGKDM FTMDYRYPLSAFQAFAICLSSFDTKLACE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 429 | 429 | 1.1E-272 | – | |
| PANTHER | 1 | 429 | 429 | 1.1E-272 | – | |
| SUPERFAMILY | 49 | 97 | 49 | 2.49E-6 | ||
| Pfam | 52 | 104 | 53 | 1.8E-9 | ||
| Gene3D | 53 | 98 | 46 | 1.9E-5 | – | |
| SUPERFAMILY | 102 | 429 | 328 | 2.88E-103 | ||
| Pfam | 116 | 424 | 309 | 1.7E-100 | ||
| PRINTS | 169 | 185 | 17 | 4.2E-80 | ||
| PRINTS | 185 | 209 | 25 | 4.2E-80 | ||
| PRINTS | 237 | 264 | 28 | 4.2E-80 | ||
| PRINTS | 332 | 349 | 18 | 4.2E-80 | ||
| PRINTS | 350 | 366 | 17 | 4.2E-80 | ||
| ProSitePatterns | 350 | 363 | 14 | - | ||
| PRINTS | 386 | 405 | 20 | 4.2E-80 | ||
| PRINTS | 407 | 429 | 23 | 4.2E-80 | ||
| ProSitePatterns | 414 | 429 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0357000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…