Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0357300 |
| Transcript ID | LotjaGi6g1v0357300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan family protein; TAIR: AT1G15190.1 Fasciclin-like arabinogalactan family protein; Swiss-Prot: sp|Q5Q0H2|FLA19_ARATH Fasciclin-like arabinogalactan protein 19; TrEMBL-Plants: tr|A0A151T7Z9|A0A151T7Z9_CAJCA Fasciclin-like arabinogalactan protein 19; Found in the gene: LotjaGi6g1v0357300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66905781..66907205) extracted from Lotus japonicus Gifu genome v1.2.
TCATCAACTTTTCCTCTCGCCAAGACAAGCATCAAGGGGCTTCATATTTTACCACACCATTAATATTGTTGGGTTATCAT CTCTCATCCTGAAACACTTCACAAAGCCCTAAAACTCAAAGCCCATTAAGTCAAGCCCAAAATAGAAAGAAGAAGAGTGT CAATTTCGCAATATAAAAGCAGGAAAAGTAAAAGTGTGTAGGAAGGAGCATTTACGAATTTACTTACCGCCAAAACGACT AACCAACCAACCACCATCTTGGAGTTCTTTCTTGAAATGAGGTGCGGGATTTTCCACGCCGTGTGGATGTTAACGGTGGT GCTGGCGGTTTCTAACGCCGTCGTCACCGTCACGTGCATACCGATCAGAGAGTTTGATTCCATGCTTGACACCCTACGAG CCACAGGGTACGACCTCTTCTGCAACGCAATCGTCACCTCTGATCTCCAATTCCACCTTCTTTCAAACGACACCAACTCC TTCACCTTCTTCGCTCCCACCGATGCTTCCCTCTTCGCCCTCGACATTTCTCAAACGGCGTCGTCTTACACTGAAACTCT CCGCTTCCACGTCGTTCCTCGCCGCCTCTCCCTCGCCGAGCTCCGCCGCCTTCCCAACGGCTACACTTTTCCCACTCTCC TACCCAATCGCCGGCTCCATCTCACGCGCCGCCGTTCCTCGTATAGCATCGCTGTCGCCGGAGTCGATGTTGCTGTCCCC GGCCTCTTTTACGGTCGGCACGTCGCCGTTCACGGTCTCGCAGGAAGCCTCAGCCTTCGATCTGAGAATCCTCTCTCGGC GGCGTCTCTGCCGGTGCCGGTGCCTTCCCCTGCTGGTACTCTGTATTTCTCTCCAAGATTCGGGCCTGTGTCGTCGCCGG AGAATCTTGGTCCGATTCCGTTCAATTTCGGAATCCGGAGGGGTTTTCATCCTCCGGCACCGGAAATTGGAGTGGTTAAT GATGCTTCTCCGGAGCCTGAAGCTGATTGGACGGTTGGCGATTCCCCTGCAGTGACGCCGGTGGTTTGGGCTCCGAGCAT TCCAGATTCGGCAATATCTTTGTCGCCGGAGGGATATTCCGATGCGGCGGCCCCGACTCCTGCGGGCTTGGAGGAAGGCA GGGTTACTTCGATAGAGAGCGAGATGGAAGGCTTGAGAAAGTGTGAGAATCATCATGATCATGACGTTGGAATTGAATTG GAAGATTACATGCATTGCTATGCAACTTGATGAGCTTGCTTAATTGGTACTAATAAAATTGGATTGACTGTTCATCATTC AATTGCTGAAAAAGGGTACAGATTGAATTGCTTTCATCTTTTTTGCTGTAACATTCAAGTTGTTTGAAATTTCAGAGTCT AGCAAATAGAAATAGTTGACAATAGTTGTTAATTACTTGTAATTAGAATCATTGCAAAATCCAGA
CDS sequence (LotjaGi6g1v0357300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGTGCGGGATTTTCCACGCCGTGTGGATGTTAACGGTGGTGCTGGCGGTTTCTAACGCCGTCGTCACCGTCACGTG CATACCGATCAGAGAGTTTGATTCCATGCTTGACACCCTACGAGCCACAGGGTACGACCTCTTCTGCAACGCAATCGTCA CCTCTGATCTCCAATTCCACCTTCTTTCAAACGACACCAACTCCTTCACCTTCTTCGCTCCCACCGATGCTTCCCTCTTC GCCCTCGACATTTCTCAAACGGCGTCGTCTTACACTGAAACTCTCCGCTTCCACGTCGTTCCTCGCCGCCTCTCCCTCGC CGAGCTCCGCCGCCTTCCCAACGGCTACACTTTTCCCACTCTCCTACCCAATCGCCGGCTCCATCTCACGCGCCGCCGTT CCTCGTATAGCATCGCTGTCGCCGGAGTCGATGTTGCTGTCCCCGGCCTCTTTTACGGTCGGCACGTCGCCGTTCACGGT CTCGCAGGAAGCCTCAGCCTTCGATCTGAGAATCCTCTCTCGGCGGCGTCTCTGCCGGTGCCGGTGCCTTCCCCTGCTGG TACTCTGTATTTCTCTCCAAGATTCGGGCCTGTGTCGTCGCCGGAGAATCTTGGTCCGATTCCGTTCAATTTCGGAATCC GGAGGGGTTTTCATCCTCCGGCACCGGAAATTGGAGTGGTTAATGATGCTTCTCCGGAGCCTGAAGCTGATTGGACGGTT GGCGATTCCCCTGCAGTGACGCCGGTGGTTTGGGCTCCGAGCATTCCAGATTCGGCAATATCTTTGTCGCCGGAGGGATA TTCCGATGCGGCGGCCCCGACTCCTGCGGGCTTGGAGGAAGGCAGGGTTACTTCGATAGAGAGCGAGATGGAAGGCTTGA GAAAGTGTGAGAATCATCATGATCATGACGTTGGAATTGAATTGGAAGATTACATGCATTGCTATGCAACTTGA
Protein sequence (LotjaGi6g1v0357300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRCGIFHAVWMLTVVLAVSNAVVTVTCIPIREFDSMLDTLRATGYDLFCNAIVTSDLQFHLLSNDTNSFTFFAPTDASLF ALDISQTASSYTETLRFHVVPRRLSLAELRRLPNGYTFPTLLPNRRLHLTRRRSSYSIAVAGVDVAVPGLFYGRHVAVHG LAGSLSLRSENPLSAASLPVPVPSPAGTLYFSPRFGPVSSPENLGPIPFNFGIRRGFHPPAPEIGVVNDASPEPEADWTV GDSPAVTPVVWAPSIPDSAISLSPEGYSDAAAPTPAGLEEGRVTSIESEMEGLRKCENHHDHDVGIELEDYMHCYAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 16 | 14 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| PANTHER | 9 | 194 | 186 | 4.5E-68 | – | |
| PANTHER | 9 | 194 | 186 | 4.5E-68 | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 317 | 296 | - | – | |
| SUPERFAMILY | 27 | 153 | 127 | 3.14E-12 | ||
| ProSiteProfiles | 32 | 165 | 134 | 9.74 | ||
| Gene3D | 40 | 148 | 109 | 9.4E-7 | ||
| Pfam | 47 | 142 | 96 | 5.1E-7 | ||
| SMART | 70 | 168 | 99 | 0.0029 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0357300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…