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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0358800 |
| Transcript ID | LotjaGi6g1v0358800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HSP20-like chaperones superfamily protein, putative; TAIR: AT1G20870.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|Q9SYQ0|IDM3_ARATH Increased DNA methylation 3; TrEMBL-Plants: tr|I1MDP9|I1MDP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0358800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67060184..67063560) extracted from Lotus japonicus Gifu genome v1.2.
GGCGGACCCACACAGGGCCCAGGGGTTCAATTGAACCCCCTGAAAAAAAAATACCTACCCCCTATAATATTTTTTTCTTG ACCCCTCTGAGAATTTAAATTTGCACCCTAGACCCAACTCCTCTCTCTCTCACACACTCATCACGTGATCTCTCACACGC CCTTCACTCTCGTTCTCTGATTTCACGATACACAACTCCACAACCACAAGCACTCTCAGTCTCTCACCTAGGTCTGGTCA CCACCACGCCGTCTCACCGGCCACCACCACGCCGTCCGCCGCACCACCACGCCGTCCGCCACACCACCACTGTCCAGCCG TGCCTCTGGCTCTGCGGTTCTACTTCTACAGGTATGGCTGATTTGAGTGATTTCCCTAACCCTAATTTCCTCAAATGTCA TAATTTCTCAAGCATGATACATGAAATCAAAGTAGAAGAAAGAAACCTCTAATCACAGATTCACAGTATTGTAAACTGAA ATTCTTTGTTCCTTTTGATTGGGTAATTTGGTACTGCTATTCGTTGTCTATTGTTTGTGAAAGTGATCTCTCTCTGCAAT TCCTTTTTCCTTTTTGTAGTTTCATATGTTTCTCAATTTGCAATAAGCCAATAACACTTCCCAGTTCCCAGTGAAACTAT TGAGTGCATCTATCAAATGGTAAGTATCTTGAATTTTCCCAAGGTGTCATGGCTCTTGTCTGCTACTTGTTTCTGCTTCA GGTCCCTGTTTTGCTCCAAGTTGAATTCGTGGAAGTTGGCTTTGTGTTTTGATAATTGGGTGTGCGTTGGAATTTTAGGT TGAGGATATATTGATCCAATTGTGTTAAGGTTGTCATGTTGTGTGGATTGAGAACCTTTGCTGTTTTTTTTTGGGTCCTT TTGTCTGTTGCATAAATAGCAGTTTAGGCACTTTTTTCCTATTCTCTGGTTTGATGACTATGTACAGGGTTGGGATAATT ATGATTAAAGACAGTTTTGACAAGTTTATCTTCTTTTGAAATTGACACATACATGGATGAATGATTGTTTAGTTATTTAC ATTGAGAGTGATGTATTCAATAACATTGACTCTAAGTTTATTGTTCAACGATTTCAGAATATGAAATCGCGTAGAGGACA ACTATGATTTGTATAATTTGTGATGTATAAACATATTACCGTTGTTTTTTAATTATATTTTTATCGATGTGCTCATTTGG AAAATTTGAACCCCTGACCCAGGGGTCCTGGATCCGCTACTGACAACACCCCTTCATGGATTTGAAACCAAATCTTTGTT ATAAGAGAAGGTCTTCAACTCCCAATCCAGTAATCAATGATAGTGATAACAAATTTCTCATTGACTTCATCTTCACTACT TATTTGGGACCTGATGTCAAGTCTGAAATTCCAAGATGTTCAGTTCTTCAAAGACCTATAGCTGAATTGCCACCATATGC ATTGAGTGATTTAGGACCTTCTCATGTTAGCATTTCACTCTTAGAGAGATTGTACTACTATCTACTTAGAAATGCTTCTT CTGACCTTGTCTTGGATCTCAGCATGTTGCATATGTATTTGAAGGGAAACTTGTTGTTGCCCAACTATGGCTTTACTGAG AATAGTAAACAGTTCACTAGTCTTTTCCCTTTGGACCTTCATCAACAGATATGGTACCCTGATAGCTTTAGGATTGTTAA AGGGGTTGTTTTAATTGATGATCCTCTTACATCATACATCAAAGAGGAGGATTTGAATAGATTCAAGTATTTAACTGGTG TCAAGTCTTTCAAGTTGAATCTAAGTGAATGTCTGCGTGTTCGACTACACCCCCGTGCGACCAAGGAAGGTGACGATAAT TGCATCAACAAAGGGTCAGAGAGTAGTCCAAATGAGGGGTGCCAATCAGGAAAGTTTCAACAGGAGTACAAGAGGAAGTT TATTGATGATGATACTCTGCCAATGCCAGAACTCCCTTGTGCCTTCCCTACAAAACATCACAATAAGGGAGATCATCGTT CCGAGAAGATGTGCAAATTTGATGGGCCTACCATGATGCCCTTTCTCTCAATTCCCGATGTTGATGATTGTAGCCGAGAT TCTTTGAATTTAACAGGGACAGCCAGAAAAGGGCTATTTGGCCCATCTGTTGGTATTGTGGATATTGGTACCAGTAAAGC AGCATATCTATTCCGAGTTTCCTTACCGGGGGTCAGGAAAGATTGTGGTATATTTTTATTCTTTCTATACTCAGTTTTAT TCTTCCAGTTCTTTTGTTGTTTTGTACTATCCGCCATAAGTTTTTTTAAATATATTTGAAATAGAAATGGCTTTTCATAT ATTATATAGTCTGCATTTAGTATAGGCCTCTTTGATCATAGTTGTTCTATCAGTAATGAACTCATTTCACTGGGAAATTT TTGTGTGGTGTTGAGCACTGCAAAGAATACTTAGCACCTTCAATAGGAGGATTGGCTTAGGGAGTAAAGTTCACATGAGC TGGTATATCATGTATGTTTCTATTATTGCTAGTTTGTGCAATAGAAGGACCTTCTTTAATAAGAAAATGAATTGTAATGT TGTGACATACTGTAATTTCTTTTAATATATAAATGACACCTGAAGATTGCTAATGCTGGCAATTAACATGAAATTCTACT ACTGTGAGATGCATCTAATTTTGTTCTTAAATGAATTTGCATCATACTTTGTAACAGGTCAGTTTAGTTGTGATATTGAA TCTGATGGGAGGGTCCACATCAGAGGGCTGTTAGCTGGCGGAAGAACTATAACAAAACAATCGCGTGTTTTTGAGATGAA AATCCTGAAGTTATGCTCTCCTGGACCATTTACGGTTTCATTCAGTCTTCCAGGACCTGTTGATCCAAGACTCTTTGCAC CTAACTTCAGGTCTGATGGCATTTTTGAAGGAGTTGTGATCAAGCTCTAGTTATTTGTCCAAGAGTTAGGTATCTAACTT TTTGTAAGCAGTTCTAGACTTGGTGGGAAACAAAATTCTCACATCAGAAACTAACAAATTTCTCAATTTTTTTGTGGGAA CCCGGATTGCATCAGATGCAGTTAGTCTACTACTCCAAAGAATTTGCATGTGTATGCAGGGAAGACATTGATTTTTTGTG CATAGGCTATAATGCAAATGGGGAATTGGCGTTGCTATTAAATTGCATCTCTCTTTAATCTGTTTGTCGGTGTTGAGAAA AATTAACTTTACACACACACACACACACAGAATACTATCAGTTGCAGCTATATAAAAGGCAACAACATTTGAATTTAACA TGTATGCATGCACTGAAAACAGCATAAAGCAGTGTTATCGCACCTAGTTCTCCACACAAATCACAATGTTGAGTATTTTT TCCTCAAAGGATTGCCG
CDS sequence (LotjaGi6g1v0358800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGAAACCAAATCTTTGTTATAAGAGAAGGTCTTCAACTCCCAATCCAGTAATCAATGATAGTGATAACAAATT TCTCATTGACTTCATCTTCACTACTTATTTGGGACCTGATGTCAAGTCTGAAATTCCAAGATGTTCAGTTCTTCAAAGAC CTATAGCTGAATTGCCACCATATGCATTGAGTGATTTAGGACCTTCTCATGTTAGCATTTCACTCTTAGAGAGATTGTAC TACTATCTACTTAGAAATGCTTCTTCTGACCTTGTCTTGGATCTCAGCATGTTGCATATGTATTTGAAGGGAAACTTGTT GTTGCCCAACTATGGCTTTACTGAGAATAGTAAACAGTTCACTAGTCTTTTCCCTTTGGACCTTCATCAACAGATATGGT ACCCTGATAGCTTTAGGATTGTTAAAGGGGTTGTTTTAATTGATGATCCTCTTACATCATACATCAAAGAGGAGGATTTG AATAGATTCAAGTATTTAACTGGTGTCAAGTCTTTCAAGTTGAATCTAAGTGAATGTCTGCGTGTTCGACTACACCCCCG TGCGACCAAGGAAGGTGACGATAATTGCATCAACAAAGGGTCAGAGAGTAGTCCAAATGAGGGGTGCCAATCAGGAAAGT TTCAACAGGAGTACAAGAGGAAGTTTATTGATGATGATACTCTGCCAATGCCAGAACTCCCTTGTGCCTTCCCTACAAAA CATCACAATAAGGGAGATCATCGTTCCGAGAAGATGTGCAAATTTGATGGGCCTACCATGATGCCCTTTCTCTCAATTCC CGATGTTGATGATTGTAGCCGAGATTCTTTGAATTTAACAGGGACAGCCAGAAAAGGGCTATTTGGCCCATCTGTTGGTA TTGTGGATATTGGTACCAGTAAAGCAGCATATCTATTCCGAGTTTCCTTACCGGGGGTCAGGAAAGATTGTGGTCAGTTT AGTTGTGATATTGAATCTGATGGGAGGGTCCACATCAGAGGGCTGTTAGCTGGCGGAAGAACTATAACAAAACAATCGCG TGTTTTTGAGATGAAAATCCTGAAGTTATGCTCTCCTGGACCATTTACGGTTTCATTCAGTCTTCCAGGACCTGTTGATC CAAGACTCTTTGCACCTAACTTCAGGTCTGATGGCATTTTTGAAGGAGTTGTGATCAAGCTCTAG
Protein sequence (LotjaGi6g1v0358800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLKPNLCYKRRSSTPNPVINDSDNKFLIDFIFTTYLGPDVKSEIPRCSVLQRPIAELPPYALSDLGPSHVSISLLERLY YYLLRNASSDLVLDLSMLHMYLKGNLLLPNYGFTENSKQFTSLFPLDLHQQIWYPDSFRIVKGVVLIDDPLTSYIKEEDL NRFKYLTGVKSFKLNLSECLRVRLHPRATKEGDDNCINKGSESSPNEGCQSGKFQQEYKRKFIDDDTLPMPELPCAFPTK HHNKGDHRSEKMCKFDGPTMMPFLSIPDVDDCSRDSLNLTGTARKGLFGPSVGIVDIGTSKAAYLFRVSLPGVRKDCGQF SCDIESDGRVHIRGLLAGGRTITKQSRVFEMKILKLCSPGPFTVSFSLPGPVDPRLFAPNFRSDGIFEGVVIKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 393 | 375 | 3.9E-165 | – | |
| PANTHER | 19 | 393 | 375 | 3.9E-165 | ||
| Gene3D | 269 | 393 | 125 | 1.5E-5 | ||
| CDD | 296 | 374 | 79 | 1.90583E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0358800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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