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LotjaGi6g1v0361800.1

Overview

Field Value
Gene ID LotjaGi6g1v0361800
Transcript ID LotjaGi6g1v0361800.1
Lotus japonicus genome version Gifu v1.2
Description Thiamine-phosphate synthase; TAIR: AT1G22940.1 thiamin biosynthesis protein; Swiss-Prot: sp|Q5M731|TPS1L_ARATH Thiamine biosynthetic bifunctional enzyme TH1, chloroplastic; TrEMBL-Plants: tr|A0A151T846|A0A151T846_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0361800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:67391502..67396940) extracted from Lotus japonicus Gifu genome v1.2.

CATTTATGGGTTAAAAAAAAAGAGGTGGGGCGCGGAGCCCCATAGGGGGGCCCCAAACCCAACTCTCCCCTCTTTCCACC TCATTTTAGAGGTGTGAAAGAATAATTATCCCATTCTAAATAACATAAAATTTCACTCATTTTCTCTCCCCCTACTCTTC ACTAGCTTAGCTTATCAGGCATGGCAGCTATCTGCACTAAACTCAAATAAAATGGCCTCCACTCAGCTCCTCTGTTCCTA CGTTGATTATCATTGTCGTCACACTCAGGTAAGGTACCTTAGCCTCACTTTACAATTCCATTTTCTCACAAAATTGATTT TTTTATTTATCATCATGAATTGAATCATTCTGCAAAATTGATTTTTCTTCTTCTTTATTCTTACAATCAATGATGCCCAG GTTGCCCCAATAGTTTTCAAACGTGTCAGGAGTTCGAGCTTCTTCCCATTTTGCAATTCAGCTACTCATCGAAAGAATCA AAGGGCGATTTTTATGAAGATGGAAGCAGATACAGCTTCAACAACCGTGCACGCTTCTGACAACAAAATTCCACATGTTC TCACTGTTGCCGGCTCTGATTCTGGAGCTGGTGCTGGAATCCAAGCTGATCTCAAGGCTTGTGCTGCTCGCCGGGTCTAC TGTTCCACCATCATCACTGCTGTCACTGCACAGAACACTGTTGGAGTTCAGGTTCACCTTCTTGTTAATTTCATCACCAC TATTGATTATATAGATAGTCAATTCAAACCCCTAATGCCAATTATGTTTTGTATTGCTTTATTTACTTTTTCTGAAATCT GTGGCAATTGCTAGGGACTGGAAATGGTGCCAGAGGATTTTGTGGCAGAGCAGCTCAAGTCTGTGCTCTCTGATATGCAT GTTCATGTGGTAAGTCAGAACAGTGAGTACTACAGCTATTATTTCCAAGTATTCCCCATATTCAGTTATTTTGAAACTTG GCAAAGAGTTGTTGCTAATCTTTTTTCCTTCTGAACTAATTATGCTATGTCCCTAGGTCAAAACAGGCCTGCTGCCCTCT CTTAGTATAATCGAGGTCGTCTGTCAGAGCTTGAGGAAATTTCCAGTCAAAGGTATTCACTAGTACAATTATTTTAACGC ATATATTTAAATTGCAAATTTGCAATTGGAGTGACTTCTGTGCTGATTTTTTTTGCTCTGAAGGAAGCTCTTGTTGTTGA TCCTGTCATGATATCTACAAGTGGAGATGTACTTGCTGATCCTTCAGTACTTACTGGATTCCGGTATGAACATTTGAACA TCACCTATGCTGCATCTGTAGTATGACATGAAACTATTTTACATAAAACATAGATTTCAGTCTTCACAACATGACTCAAA TAATATTAACTATTTGAAATAATTAGATTATGTACTCTGTTGCTTAACTTTCCGTTTTTATGGATTTTTGTCTATACTTG AATGTTCAAACTGTCCAAGTCAATTGCCTCATGTTACATTCTTGAGACAAGTCGTTCCTACTCACCAAATGACATTTTCA TTGTTTTCTACGAAATGATCATCATTTATTTACACATTGGTTTTTTGGTTTCCCGTGCTTATACACAGACACTGCATATA TTTTATACAGCACTGGACATATGGATATTGGATAAAAATAATGTTTCTAACATTATTTCAAGTATATTAATAAAACTGTA GGATATTGATGCTGCTTGTTTGATTGGTTTCTGAACGCAGGGAGCAGCTGCTTCCTATGGCTGACATTGTGACCCCAAAT TTAAAAGAGGCTTCAGTTTTACTAGGTGATGTGCCACTGAAATCCGTTTCTGACATGCGTGCTGCTGCAAAATTGATTCA CGATTTGGGTCCTAGGTTAGTTGCTGTTTATTATATTTGAATATTTTGTTCCCTGTCAATCTAAATAATGATTTAAATCT TTTAATATTTTTTGTCTTTCACTGTTACTAATGGATATATGTTTATGCTTTTACGAAACTTATGGAACTATCAAAAGTAA CTTTACTGCTTGAGTAGTTCACTTTCAATGCTTGTTTCAGTTGTTTCGTACAGCTTGAGCTTTCCAACATAAAATGCATG GACCTTTTAAAATTGTATTTCATTTTTCACAAAGTTCCAAAAATAAAATCACTGATTGCAGTAACAGTACTGATAAATCA AATCTAGCAATTATAAATTGGTATACTTGTCTCTTAATCTTCTCAGGAAAGAAATCCTTAGAACGTGCCTTACTTAAGCC ATTTTCAAATGGACACTTTTACTAAATTACTATTACTTAGATCCTTAGATATATAGCGAATAATCTGTGGGAAATAAAGG GATTGTTTAAATCAATATCTACCATGTCCCTGTTGGCCTGAGCAGTACTGTTGGAGCTGAGAAACATTCTGTATTTATTG TAATGATGTTTATATTGATCTAAGTTGACTGTTGTGTTGTCCTGAACTAATGGTGCCCCTCGTAATGCTTGCTTTACATC AGCACAAAAGTAAATCAACACTTCAACATAAGACTATAAGAGTAATGTGCTTTTATGGATAATAAATTTCCATTTCAGGA ATGTACTTGTCAAAGGTGGTCACCTACCTAATTCATTTGATGCTATTGACATATTCTTTGACGGTAAGATTCAAGTCTTT GATTCTCTAAACGCAGAGCCACAAAAAGAAGAATCTGGGAGACAACAACTTTTTTCCTTTACTTTTTGTTAAAAATGAGC TCAATTTTTAGGCCTTCAATTTTGCAGGTTTTGAATTATACGAGCTCTGTTCGCCACGTATAAGTACTCGCAATACCCAT GGTACTGGTTGTACCTTGGCATCTTGCATTGCAGCAGAGCTGGCAAAAGGTTCATCAATGCTTTCAGCAGTTAAGGTTTG TTCAGCAATCTCAATTCACATTAATCTTGAAGGACCTCATTTGCAATACCTATGATTTATTCCCCCATCTCTCTCTTTTT CTTTATAAATTATAGTATAAGCAAATGAAATAAAAGCCAATAAAAGGATGGAACAAACTATCATTTTATATTTTTAATTA CATATCTGGATTTTGGCAGATAGCTAAACGGTTTGTTGAGTCCGCCTTGAATTACAGCAGGGACCTGGTCATTGGAAACG GAGTCCAAGGCCCTTTTGATCATTTTTTGGCACTCAAGAATATCAATCAGAATTCTTGTAGGCAGGATAGGTTCAATCCA AACAACTTATTGCTATATGCTGTAACAGATTCAGGCATGAATAGGAAGTGGGGCCGTTCTATTGCTGACGCTGTTAAGGC TGCTGTAGAAGGTGGTGCTACCATTGTTCAATTAAGGTTTGTTTCTTTAACCGTGTTTTGCTTGTTTTTGTATCATCCTA ATTGTTATGCAGAATCTATCTTTTTCTTGCAATTAGTGTATATGATAACACATATAATTATCTATAATTTAATATGCCAA GCTCATTAACCTGAAGATCTGGAAATTTCTAATCATTTGCAAAGTTATTGGTTCAATCTTTTTTCTTGGATTTGTGATCT TTTGTATTTCTTTCCTTTTCATCCTCGCCCTACCAAAAAGAGAAAATATTAAGTAAATATTACGAAGTTAGATGTTTAAT TTCAGGCTCAGGCTTGATTGGTTGAACTTCAACAAACAATACTACACCAGGCATCCTTTTCTTTTAGTGTGTCCATGTTT CTATTTTCTCGTACTGATGCCTACTCTTGTTCTTTTCTCATATTTGTATAATTGTATGTGCCATTAATTACAGGGGCTAA AAAAACCTCCACAATTTATTTGTTATATCCTACTTTTGTTGTTGTTAGGGAGACCGGTTAGTTTTATTTCATCTGCCATA CTGCATACATGTCTTGTTGAAGTATGCCATGAAAACTTTCTTGTGGCGCTGTCTTTAACTGTTTGAAATATAATATCATT CAGACAATTTTTTATCACCAAAATCTGTCTCCCACTCTCTGGCTTTATCTTTAGCTAAGCTGAATCTGACTGTCTCTGGT TGCCTATCTAACCTTGTCCCTTCCATGAAAAAAGTTATCATCTCATAGTTGATGCAACATTAGGCTGTCCTCTAAAGCAG ATCATTCAGCTGTAACAGTAATTCATGTTCTTCGCAGCAATTCCTGTTGTGCCTTGATCCTAATCCATGTGTGGTTAGTG ATTACTGATATAATATTATTGAACTTAAGAAATTGTTTGTTGTGTCACATTTAATGGAAGTGTCTTAGGATGCATGCTTG ATTTTTACTCTTATTCCTGTTAGAACTTAAGCATGGAAATGAATCATTTTAGCCTGATTCATGTTTGCTTTGCTTTTCCA GGGAAAAGGATACTGAGACACGGGACTTTATTGATGCTGCCAAAGTATGCATTGAAGTATGCCGTTCCTATGGAGTACCT CTGCTTATAAATGATCGTATAGATGTGGCCCTTGCTTGTGATGCTGATGGTGTTCATATTGGGCAGTCTGACATGCCTGC TCGTCTTGTTAGAACTCTCCTTGGTCCTGAGAAGATAATTGGCGTGTCATGCAAGACGCCGGAGCAAGCCCATCAGGCCT GGATTGATGGTGCTGATTACATTGGTTCTGGTGGTGTGTATCCAACTAATACAAAGGAAAACAATCGTACCATAGGCTTA GACGGACTGAGGGAGGTGTGTCAGGCCTCTAAACTGCCTGTGGTTGCAATTGGTGGCATTGATCTGTCAAATGCCCGTGC TGTTATGGAAATTGGTGAGCCAAATCTGAAAGGCGTTGCTGTAGTTTCTGCTCTATTTGATAGGGAATGCATTTCCACTG AGACAAAAAACTTGCACGCGTTAATAAGTGAGCGAGTATTGTTGAAACAATGAACATACATACCACAATGTGGGTTGAGC TTTTAGTTAAAGGAGTGGTTGCTGGTTAGAAGAGTTCTACTTGCTTTCGCCTTAAGGTATATGTATAAGTGCAGATTCTC TAGGGACATGCTAAATTTATGAAAGCAGAAAAATAATGAACAATTTCTGCAATGGTCATTATGGAGCAGAACAGAACATA TTTGGTGGTTCATTTGTTTGCCTTGGTTGGATGTTCGTACCTGCTGATTTACAGCTCAAATGGTATAACAATAATTTTTT TTCGGGAAAACTAATGTATTTTGTAGTTTGTTCTGGAACTGTTATTGCATAATTGGTGGGAAAGCCTTGTCTATCAGTGA TCAGTCGGAAAATTTTCATCTACTACCCATTTTCCATCGACATTATGTCTCAGAACATTAATTGAATTCAGGTAAAATTT TCAGCTCGCTCGAGATCTTGGGAGCTCTGCCTTTGGGGCTTCTTGCTCGCAAGAAACATTCCCCATTTTAAAAAATGACT CAATTACACTTCTGATCTCTTCTATTGGATTGGACTAGGGGTGTTCGAGGATTCTAATGGATCGGGTTTGAAGAGAAAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0361800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCTCCACTCAGCTCCTCTGTTCCTACGTTGATTATCATTGTCGTCACACTCAGGTTGCCCCAATAGTTTTCAAACG TGTCAGGAGTTCGAGCTTCTTCCCATTTTGCAATTCAGCTACTCATCGAAAGAATCAAAGGGCGATTTTTATGAAGATGG AAGCAGATACAGCTTCAACAACCGTGCACGCTTCTGACAACAAAATTCCACATGTTCTCACTGTTGCCGGCTCTGATTCT GGAGCTGGTGCTGGAATCCAAGCTGATCTCAAGGCTTGTGCTGCTCGCCGGGTCTACTGTTCCACCATCATCACTGCTGT CACTGCACAGAACACTGTTGGAGTTCAGGGACTGGAAATGGTGCCAGAGGATTTTGTGGCAGAGCAGCTCAAGTCTGTGC TCTCTGATATGCATGTTCATGTGGTCAAAACAGGCCTGCTGCCCTCTCTTAGTATAATCGAGGTCGTCTGTCAGAGCTTG AGGAAATTTCCAGTCAAAGCTCTTGTTGTTGATCCTGTCATGATATCTACAAGTGGAGATGTACTTGCTGATCCTTCAGT ACTTACTGGATTCCGGGAGCAGCTGCTTCCTATGGCTGACATTGTGACCCCAAATTTAAAAGAGGCTTCAGTTTTACTAG GTGATGTGCCACTGAAATCCGTTTCTGACATGCGTGCTGCTGCAAAATTGATTCACGATTTGGGTCCTAGGAATGTACTT GTCAAAGGTGGTCACCTACCTAATTCATTTGATGCTATTGACATATTCTTTGACGGTTTTGAATTATACGAGCTCTGTTC GCCACGTATAAGTACTCGCAATACCCATGGTACTGGTTGTACCTTGGCATCTTGCATTGCAGCAGAGCTGGCAAAAGGTT CATCAATGCTTTCAGCAGTTAAGATAGCTAAACGGTTTGTTGAGTCCGCCTTGAATTACAGCAGGGACCTGGTCATTGGA AACGGAGTCCAAGGCCCTTTTGATCATTTTTTGGCACTCAAGAATATCAATCAGAATTCTTGTAGGCAGGATAGGTTCAA TCCAAACAACTTATTGCTATATGCTGTAACAGATTCAGGCATGAATAGGAAGTGGGGCCGTTCTATTGCTGACGCTGTTA AGGCTGCTGTAGAAGGTGGTGCTACCATTGTTCAATTAAGGGAAAAGGATACTGAGACACGGGACTTTATTGATGCTGCC AAAGTATGCATTGAAGTATGCCGTTCCTATGGAGTACCTCTGCTTATAAATGATCGTATAGATGTGGCCCTTGCTTGTGA TGCTGATGGTGTTCATATTGGGCAGTCTGACATGCCTGCTCGTCTTGTTAGAACTCTCCTTGGTCCTGAGAAGATAATTG GCGTGTCATGCAAGACGCCGGAGCAAGCCCATCAGGCCTGGATTGATGGTGCTGATTACATTGGTTCTGGTGGTGTGTAT CCAACTAATACAAAGGAAAACAATCGTACCATAGGCTTAGACGGACTGAGGGAGGTGTGTCAGGCCTCTAAACTGCCTGT GGTTGCAATTGGTGGCATTGATCTGTCAAATGCCCGTGCTGTTATGGAAATTGGTGAGCCAAATCTGAAAGGCGTTGCTG TAGTTTCTGCTCTATTTGATAGGGAATGCATTTCCACTGAGACAAAAAACTTGCACGCGTTAATAAGTGAGCGAGTATTG TTGAAACAATGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0361800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASTQLLCSYVDYHCRHTQVAPIVFKRVRSSSFFPFCNSATHRKNQRAIFMKMEADTASTTVHASDNKIPHVLTVAGSDS GAGAGIQADLKACAARRVYCSTIITAVTAQNTVGVQGLEMVPEDFVAEQLKSVLSDMHVHVVKTGLLPSLSIIEVVCQSL RKFPVKALVVDPVMISTSGDVLADPSVLTGFREQLLPMADIVTPNLKEASVLLGDVPLKSVSDMRAAAKLIHDLGPRNVL VKGGHLPNSFDAIDIFFDGFELYELCSPRISTRNTHGTGCTLASCIAAELAKGSSMLSAVKIAKRFVESALNYSRDLVIG NGVQGPFDHFLALKNINQNSCRQDRFNPNNLLLYAVTDSGMNRKWGRSIADAVKAAVEGGATIVQLREKDTETRDFIDAA KVCIEVCRSYGVPLLINDRIDVALACDADGVHIGQSDMPARLVRTLLGPEKIIGVSCKTPEQAHQAWIDGADYIGSGGVY PTNTKENNRTIGLDGLREVCQASKLPVVAIGGIDLSNARAVMEIGEPNLKGVAVVSALFDRECISTETKNLHALISERVL LKQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.1190.20
50 349 300 5.8E-100
IPR029056
PANTHER
PTHR20858
65 554 490 2.9E-214 –
SUPERFAMILY
SSF53613
68 323 256 5.92E-74
IPR029056
CDD
cd01169
71 314 244 1.32711E-119
IPR004399
TIGRFAM
TIGR00097
72 330 259 7.2E-98
IPR004399
Pfam
PF08543
79 322 244 5.0E-86
IPR013749
Gene3D
G3DSA:3.20.20.70
350 556 207 3.0E-71
IPR013785
Hamap
MF_00097
350 556 207 27.943
IPR034291
TIGRFAM
TIGR00693
353 550 198 5.1E-65
IPR034291
Pfam
PF02581
353 538 186 6.6E-65
IPR022998
CDD
cd00564
353 553 201 5.78169E-84
IPR022998
SUPERFAMILY
SSF51391
353 554 202 1.27E-62
IPR036206

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004789
Molecular function Thiamine-phosphate diphosphorylase activity Catalysis of the reaction: 4-amino-2-methyl-5-diphosphomethylpyrimidine + 4-methyl-5-(2-phosphoethyl)-thiazole + H(+) = diphosphate + thiamine phosphate.
Subterm of
GO:0008972
Molecular function Phosphomethylpyrimidine kinase activity Catalysis of the reaction: ATP + 4-amino-2-methyl-5-phosphomethylpyrimidine = ADP + 4-amino-2-methyl-5-diphosphomethylpyrimidine.
Subterm of
GO:0009228
Biological process Thiamine biosynthetic process The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0361800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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