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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0361900 |
| Transcript ID | LotjaGi6g1v0361900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein, putative; TAIR: AT1G78750.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g78750; TrEMBL-Plants: tr|A0A072UNA8|A0A072UNA8_MEDTR F-box/RNI superfamily protein; Found in the gene: LotjaGi6g1v0361900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67398186..67400514) extracted from Lotus japonicus Gifu genome v1.2.
CCCAAATCAACCATCCACTTCCCGCCTTGCCACATGCCTCCGCCCCCTCTCCACCGTCTCCGAGAAGCTCGGCGACGACA TCTCCAGCCTCACACTGGAACAGGCCAAGATCCTCGTCGACTACCTCCAGGACAAGCAGACGGAGTTCGATGTGGTGATT CAGGAATGCTAGGAGTTGATTGAAGGGTTGCCGAAGAAATTCAAAGAAGGAGTTTCCAAGGAAGAAGCTGAAGATGCCAA GAAGCAGCTTGAAGAAGCTGGTGCCAAAGTTGCCATTGTTCAGGTTTTCAAATGTAAAAGAGGTTTTGTTGATTCCAAAA AAAACCATGCTCTAATAATACAATCTTAAATCACATCATCAACTTTTTTTTTTCTCATGATCATGAACTTCCGTATTTAT AAATAAAGTCAAATTTAAATACTTATTAGTAATTATTAATATTAAATTGATTCTCCATCACTAAATACCAATTTAAAATA TCTTAAAAGTTGGAATTTACTTGAATTGCAGAGGAAATTGATTCTCCCTCATTGGTGACACGCGCGTTTCCTTATTTGAT TTGAAATGGCGTGGTTATATGATGGAAGCCTTCACCTTGCTTACCCTATTACATTTCTTCAAAACAACACAAGGTCATCC ATCACCCTGCACGAGGTAACTCTTATTTCTTTGGCTTTTTATGCTGAGGTAGTTATCTAAATGTTGAAGAAGGCGACAAA GAGAGGAAGAAGACACGGTGTGAGTGAAAATGAAATTGAAGAGAACAATAGTGACAAGCTCAGCGATTTGCCCGACTGCA TTCTCCTTTACATTCTGTCATTTTTAGCCGCCAAATCTGCAGTTCAAACATGCATGCTATCCACAAGATGGAAGAATCTT TGGAAACAACTTCCAGGCCTTATTTTGCATCCCCAAGACAACTTTTCCACTTACAAGAAGTTCACCAAATTTTTGTCTAG GCTTTTGACTCTTCGTGATGGTTCGGCCGCGCTGCACGAGCTCCGTTTCTGGCGCGGTCGTCCCATCCAGACTCAACTCC TCAAAAGGATGGTAAAATATGTTGTTTCACACAATATCCAGAAATTACATCTTTTCGTCTTGTGCGATATTCAAGACTTC CCGCGCTGCATCTTTTCATCTCAGACTTTGACATCTCTTCAGCTCGGAGTTCACTCTAAAGGTTTTACTTCAGAGAAAAT GTCATTGCCGAAATCTCTTAATTTGCCTGCATTAACAGGCTTGTATCTAGAGAATTTCTCATTTTCTGGAAATGACATTG ACCGTCGCCGCGTAGAGCCCTTTTCGGCTCTTATCAAGTTAAATACTTTGATGATTCACAATTGTACTCTCAGTGATGAT GCAAATATCCTCTGCATATCAAGTAAGTCTCTATGTCATTTAACTGTGATTGAATATTCTATGGTTTTATACCAAATTGA GCTATCTTCTCCAAGCCTTCGTGCCTTCGCCTTTGAGGGCATTCCTAGTATGCCACACATTGGGAGCAATCTTTCTTCCA TTGAACAAGTGAATATTAATGCAGCAATTTGGTCTGTTAACCAAGGAATTTTTCAGTCAGAAAAGTGGGGAACTTTCCAT AGTGCTTCTTTTGCTATATTCAGCTGGCTGCTAAAACTTTCCAATATAAAATCGTTGACAATCACTACAAGTACTCTTCA GGTACTACTACCTTCACATTTGCATGTTACATTAGGCTTTATTTCATTTTTAAGATACTTCTTTTATTTTAAAATTATGT TGAAATTCAATTGACTTGCATTATATTGATCATAACTTATCATCATCCATCATATCGCAGGTTCTCAGCTTATTTCCTCT TTTATCGGAGGTTAAGCCTCCTATCTTGAATACCTTGGAGTCATTGAAAATAATACAGGTACAGTTTTCATATGGACTTC CCACAACATTGAGAGGAGAATCTGGACTTATACCTATACCTGATGGAATAGTAGACTTTTTGCTTCGAAATTCACCATCC GCAAAGGTTGACATCATACCACCGCGCTGAGGACCATATATTGAAAGGAAGTTATTGGTGCTTTGCGGAAAGATTATATT TTGTGGTCTATGAAGGTTGATAAAAAGAAAGGAAGGAAGACAGAAAGAATTCCTAGGCACTTATTTGCTGTTATGATATT TTTGAATTTTGGAACTCATTGTCATATATTGAAGTTTATATATTAGCTTTTGTTTTGCAATTGAATAAACCAAGTTCAGT TGGGATGACATACACGTGGTTTGCTTCTATCATGGTGTTATCTTGTGAGTGTTGGGTTAACGAATATCTAATCTTGTAGA ATAACCACT
CDS sequence (LotjaGi6g1v0361900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAAGAAGGCGACAAAGAGAGGAAGAAGACACGGTGTGAGTGAAAATGAAATTGAAGAGAACAATAGTGACAAGCT CAGCGATTTGCCCGACTGCATTCTCCTTTACATTCTGTCATTTTTAGCCGCCAAATCTGCAGTTCAAACATGCATGCTAT CCACAAGATGGAAGAATCTTTGGAAACAACTTCCAGGCCTTATTTTGCATCCCCAAGACAACTTTTCCACTTACAAGAAG TTCACCAAATTTTTGTCTAGGCTTTTGACTCTTCGTGATGGTTCGGCCGCGCTGCACGAGCTCCGTTTCTGGCGCGGTCG TCCCATCCAGACTCAACTCCTCAAAAGGATGGTAAAATATGTTGTTTCACACAATATCCAGAAATTACATCTTTTCGTCT TGTGCGATATTCAAGACTTCCCGCGCTGCATCTTTTCATCTCAGACTTTGACATCTCTTCAGCTCGGAGTTCACTCTAAA GGTTTTACTTCAGAGAAAATGTCATTGCCGAAATCTCTTAATTTGCCTGCATTAACAGGCTTGTATCTAGAGAATTTCTC ATTTTCTGGAAATGACATTGACCGTCGCCGCGTAGAGCCCTTTTCGGCTCTTATCAAGTTAAATACTTTGATGATTCACA ATTGTACTCTCAGTGATGATGCAAATATCCTCTGCATATCAAGTAAGTCTCTATGTCATTTAACTGTGATTGAATATTCT ATGGTTTTATACCAAATTGAGCTATCTTCTCCAAGCCTTCGTGCCTTCGCCTTTGAGGGCATTCCTAGTATGCCACACAT TGGGAGCAATCTTTCTTCCATTGAACAAGTGAATATTAATGCAGCAATTTGGTCTGTTAACCAAGGAATTTTTCAGTCAG AAAAGTGGGGAACTTTCCATAGTGCTTCTTTTGCTATATTCAGCTGGCTGCTAAAACTTTCCAATATAAAATCGTTGACA ATCACTACAAGTACTCTTCAGGTTCTCAGCTTATTTCCTCTTTTATCGGAGGTTAAGCCTCCTATCTTGAATACCTTGGA GTCATTGAAAATAATACAGGTACAGTTTTCATATGGACTTCCCACAACATTGAGAGGAGAATCTGGACTTATACCTATAC CTGATGGAATAGTAGACTTTTTGCTTCGAAATTCACCATCCGCAAAGGTTGACATCATACCACCGCGCTGA
Protein sequence (LotjaGi6g1v0361900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKKATKRGRRHGVSENEIEENNSDKLSDLPDCILLYILSFLAAKSAVQTCMLSTRWKNLWKQLPGLILHPQDNFSTYKK FTKFLSRLLTLRDGSAALHELRFWRGRPIQTQLLKRMVKYVVSHNIQKLHLFVLCDIQDFPRCIFSSQTLTSLQLGVHSK GFTSEKMSLPKSLNLPALTGLYLENFSFSGNDIDRRRVEPFSALIKLNTLMIHNCTLSDDANILCISSKSLCHLTVIEYS MVLYQIELSSPSLRAFAFEGIPSMPHIGSNLSSIEQVNINAAIWSVNQGIFQSEKWGTFHSASFAIFSWLLKLSNIKSLT ITTSTLQVLSLFPLLSEVKPPILNTLESLKIIQVQFSYGLPTTLRGESGLIPIPDGIVDFLLRNSPSAKVDIIPPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| SUPERFAMILY | 14 | 67 | 54 | 6.93E-11 | ||
| Gene3D | 20 | 359 | 340 | 8.0E-17 | ||
| PANTHER | 22 | 392 | 371 | 1.5E-76 | – | |
| PANTHER | 22 | 392 | 371 | 1.5E-76 | – | |
| ProSiteProfiles | 24 | 81 | 58 | 8.941 | ||
| Pfam | 26 | 63 | 38 | 4.3E-7 | ||
| SUPERFAMILY | 124 | 357 | 234 | 3.92E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0361900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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