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LotjaGi6g1v0363800.2

Overview

Field Value
Gene ID LotjaGi6g1v0363800
Transcript ID LotjaGi6g1v0363800.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description evolutionarily conserved C-terminal region 2; TAIR: AT1G09810.1 evolutionarily conserved C-terminal region 11; Swiss-Prot: sp|P59326|YTHD1_MOUSE YTH domain-containing family protein 1; TrEMBL-Plants: tr|I3T739|I3T739_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0363800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:67529277..67534499) extracted from Lotus japonicus Gifu genome v1.2.

CCCAGATTATTTAACACGGTGAAACATGAGTAACTTCAATGCTATATATTTGACTCAAATCCTACTTTGAACTAATATTT GGATTTTCTTATCGCTTTATTTTAGAATATTGTGAGAATTGGATTAAATATTTGTTTTAGAAAATAACTATTCCATTGTG AGAGGAATGTAACCTACTTTAAAAAAAGCAGAAATAGAAAACCTAGTTTTTAGTGAGGAAGGAGATATAAATAGTGAGCA GTCGTGGTCGTGGGCCGTGGTGACCAAGTAACCGACCCTGTGTTGTCTCGTCCTCGTACTTGCCTATTCGCAGTTCTTCT AGGTTTGCTTTTTCTTTGCACTAAATCTCCAAATCTGCAACAATTGTCTGTCAGCATTCTTTATTTCTTTTCAGTTCATG TATCAATCGATAAATTGGAATATTTTAATTCAGTAGTCGCATATTTCATTTAAACACCCCTGCTTTATTTTTCCTGATTT CTGAAGATAACTGTGTTGTGTTGTTTTCTTTCTCACTGACATGCTTTCCCCTTCCCTGTTAGGTTGATTTTGGATTTTAA CGACTGAACTTTTTTCATATTTTTAACAAGGAATCTGCGACAAGTATCCTTTGTTAATTGGCATTTGCACTGTTTTTATT GTTAATATTAATATTATAGGTCTGAACTAGTCTGCTAAAGTTGTTCTTATCAGCATTTTGAATTTCCAGAATTGGATATC TCTCTCTCTCTCTCTCTCCATGTCCTCCTCTACTCTTTCCCATCTCTTTCTTTCTTTGTGATTCTGCCCTCTTTGTTCAC TGCCACCAAATAATGATAGTTTTCATCAATTTTATTTGTTGTACTATGTTTCTTGTTTTTTATTTTGTTATACTCATGTG TTTTTTTAATCCTCATCCTCATGTCTGTACGTGTGTGTATATATATTGCTAAAATTCACCAGTCTATTTATTGACAGTAA TGTAGAAGGGATATCAACATGCTAAACAGAACACAATGGAGCATGTATAAAATTGTACCTACATAACGAAATCCCAGTTA AACCTGACTAAATATTAATTCAAAAAGTAACATACATGGTAGTCAAAATTGGAATTTTAATCTCAAAATCCTTCAAAAAG TAACATTCATGGTAGTATAAATTGAAATTTTAATCCTGAAGTCAAAGCAAAATCCCTTTAATGATTTCGAAGAAACCCGG ATTTGAATCGGGTTTCAACCCGTTTCCTTATCTAACCTTATTTAATTTAACTAATATTCCAACCCTAATATTTCCAATGC TGCCGCATTTGCTTCAACACTAAGGATTCTTCTGTGAGAGGGACTGTCTATCGTCTTCCTTGTGCTTCGTTATCTGTGAG TTCTCTGTTCTCCAGCAACTTATGGATTATGAGTTATGATTTATGAGTACAACTTTTATCCAAGTCTTTCTAGGTTATTT TTAATTTGTTTTCCTTATGTATGCTGCTTTATATGCATAAATTTTACAAAATCTTACCATTAGATTTACGATTTTGTGAT TTATGATATTCGCCTGCGTCCTGATCAGGGTGCATTTGGATAAACAACGTAATTAAGCGTTTATCGCATAAGCGCTTATT CATAAGCTTAATTTGAGAACCTTATTGAAATTAGCTCAAAATAAGGAAAAAGCCCCTAAATCACCAAGATAACTATTTTT CTCTAAAATAATAGTGACTCCAATTCACTGATGTGTCATTTTTCCCTTTTCCCACTGTTTAGGAGTTGAAGAAGACAGGT AATGCTTTCTTCTGTCTGAAGTGGTTGCTTAAATGTAATAATCTAAAGTGAATCCCTCATCCCTAGATGAGGTTTAAAGT TAGGTGTTTCAGTGAGTCTTGGTGATTTTATTTGGTTTCTCTCTTGTTGGGTAAATTTAACTTATCATTTTGTCAATGGT ATACTTAACGTTGTGATATAGCTCAGTCGGTGTCAACAGGAGCAAGAGATTATAGTCAGCAGCGGAATGAGACACATGTG GTGACTGGCAATTGGCCACTTTATTGACTCTATCTATGAATTTGCATGTCTCTTTCTGTTTTTCTTTCTTACTTTTATTT AGCCTCCATCTCTTCAGTAAATAAGTTCTGCACATCTTTGCTATAGAAATGTCAGTGCTGTTCAAAGTTCAAACTGCAAA ATGCTCTGTTCAAAACCTTGAGCATGATAGCTCTCTGTTCATAAGTGTAAGAGAGTCTAAATTGCAGTTTGATAATCAGC AAGACGATACTTGATTGTCTGTTACACCATGGTAAACACATATAAGTCACTCGTACGAGTAGGACCCATAGTTTATCATG GATACATATCATTTTTACAATGTTCCCAATCAGAATTGATTTTTTTTACCTCAATCTAACTAATGATGTCATCATATTCT CTTAACATTTTCATAATTCCTGCAGGTTTCAATAAAAGGTTGTATCTCATCTGATTTGACATCACCAATGGACTCTTCTA GAAGATTTTCTGCTGGGTTTGCAGGTGTGATCATACTTGTTTCTTACTTATTATATTTACTTATATGCAGCAGTTATATA AAATTTGTTTAAGACGTTATTATGCTTAACATAAGCAGAGGGTTCAAGAAGGTAGCTGATACTATTTAGTATTTCCTGTC AATTGTGTAATAATGTAATGATTTATGATATACACATTCAATCAAAGTTCCTGGATAAGAGATATTCATGAAATAACTTT GAATGTTGTAAACCTTGGAGCATTGTGTCATGATATCAAAGTTACGCCCTTTTGTTATTTGGATGGGCATTGTGTTGGTC AACAACTTTAACTCTCTTACACTAGGCATTTTCAACAACCAGGTGTGCAGGAATCCGAAGCCATGCCTTATTATTCATCA GTCTCAACTTCGTTTGATGCGCAAAATGAAGCTGTGAATGGTACTGTGTTTGCAAAACATGATCCGAGATCGTCTGGTTC AGTGAAGCCAAATAGCTTAAAGTCTACACATAGAAAGGGCAGTTTAACCAGCACATCATCCAAGACTGTCACTGATACAA AAAGAGATATCACAATTCTGAATAAGGTAATGCCACTCCTTGTTTACATATATTCATTTTCTGGGATGGTAGAGTTGCTG CATTGATTGACCATGAATACTTGGGAAAGTGCTAATTCCTTCGCTTATATGGATAATTTTTACGGAATTTTTTTCTCCTA GGCCTTGTTTGCCACCTCTGGTATATATTGTTTTCTTTTATTTTATCTTCTTGTACCTAAATTATAGATGAATAAAACAG TTCCATGAACTTTACTTTGTTAATGTACTTTATATTTTCACTTTAACTGCTGCTATAGAACTAGAACGTTTTAATAAAGT GAATGTTTAATTTTGCAGGCTCCTCCTTTGTATCCTAATTTTACAGCAGCAACTCCTCCAAGGACCTACCACCAAATGGG AAAAGTTTCATCTTTTTCTAACCCAAAACATCATTTCTTTCCCCCAACTAACTACAGGCCTAACACATCTACTAACTATA GATCAAATGGGGGAGTGTCTAGTGTAAATGATAGATTTTTGTTAAGTGACAAATTTCAGAGTGGAGAATCTGAAATGTCA ATGGAAATGACTCGAGGTCCTCGGGGTCAGTACAACAATGTTCAGCTACAACCTCCGGCTGTTAATGATGAGCTTGCGGT CATGCTGCGTAGAGATCAGTATAACCTTCCAGATTTCCAAACTGAATATGAAACTGCTAAGTTTTATCTGATTAAATCTT TCAATGAAGATGACATTCATAAGTCCGTTAAATATGATGTTTGGACAAGCACTCCCAATGGCAATAAGAAGTTGAATGCA GCATTCCATGATGCAGAAGCTCAATTCAGTCAGACAGGCACTATGTGTCCTGTCTTTCTCTTCTTCTCGGTGAGTTCGAA TCTTTGTCCATAAATTATCTCCTGTTTTTTTTGCAGACGAAGTAGAATGTAACATGAGAAAAAAAGATGAACATTATAGA AATTTAGATATTGATATCTTACTGGAGGTATCTTGTATTTTCTTTTCTTTTCTTTTTTGAGGTTAAATTAGCAGTTCTTG ATTTTGACCCTGGACGTACTTTGTTGTCAAATCAGGTCAATGCTAGCAGGCAGTTTGTTGGAGTAGCTGAGATGCTAGGG CCTGTGGACTTCAAAAAAGACATGAAGTTTTGGAAACTTGACAAATACAACGGGTTCTTCCCAATTAAGTGGCATATAAT TAAAGATGTTCCCAACAACAAGTTTGTGCACATAATCCTTCAAAACAATGACAACAGACCTGTAACTTTCAGCAGGGACA CACAAGAGGTAAATCTTACTTTTGAACATTATAGTAGCAGCTTTTTATTCAATTTTTTGTGAGACATGATATATCATCAA ATTCGTAATTATATGGTTTGCAGATTGGTCTGAAGGAGGGTCTGGAGATGCTGAGTATTTTTAAAAGTTATTCAGCTAAG ACATCTCTATTGGATGATTTTGATTTCTATGAGAATCGTGAGAAATTATTTCGTTCGCAAAAGAGTACTAAGCATACAAG CCCAAAGCCCCAAGTATACAACAGTGGCAATTACCATGTATACAACAATGGCAATTACCATGTAAGTTCCATTTCCTTTG TCTAGAATGCTTTTTTAATATTTCTTCAATTGAAACATAGAAGATATGCAACTTGCAAGAAGTACACACAATTGGAATAT TGTGTCAATTGGAATATTGTGATGCTGTAAATATTTTTCTTTATGTTCTTGTATTAACTTTTACTTTTGTGATTATTTGT CTTTTTAACTGTGCAGAACACAGTTGAGGCAAGGGAGAAGAAAATAGAGATGCAATCAAGTGATGGCACCAAGCAATTTA ATCTCATCAAACTTACAAAGAACCTTTCTCTCAGTCCATCTGAAACACAACTATCTGAGAAACAACTACATGGCTTTAGA TATGGCAAGATTGCTAGGTGAGCCAAAAAAGGAAAAAAGATGGTCAGAAGTTTATTTCTGCGTGTAGGGATGTTAGAATT GCAGAGTTGCGGTTTGGTAGTAGAGCTCCTCAAGCATTCGGCCTCTTATCTTATTATTATGTGATTTATGTGACTCGTCA ATATGATTTTAACATGTTTTAATTTAAGTTTGACTCATTAATATCTGTATATTGAAGAACACATTGTCTTTATATGTGGA GCTTTTTGACATTATGATTCAAT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0363800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTCTTCTAGAAGATTTTCTGCTGGGTTTGCAGGTGTGCAGGAATCCGAAGCCATGCCTTATTATTCATCAGTCTC AACTTCGTTTGATGCGCAAAATGAAGCTGTGAATGGTACTGTGTTTGCAAAACATGATCCGAGATCGTCTGGTTCAGTGA AGCCAAATAGCTTAAAGTCTACACATAGAAAGGGCAGTTTAACCAGCACATCATCCAAGACTGTCACTGATACAAAAAGA GATATCACAATTCTGAATAAGGCTCCTCCTTTGTATCCTAATTTTACAGCAGCAACTCCTCCAAGGACCTACCACCAAAT GGGAAAAGTTTCATCTTTTTCTAACCCAAAACATCATTTCTTTCCCCCAACTAACTACAGGCCTAACACATCTACTAACT ATAGATCAAATGGGGGAGTGTCTAGTGTAAATGATAGATTTTTGTTAAGTGACAAATTTCAGAGTGGAGAATCTGAAATG TCAATGGAAATGACTCGAGGTCCTCGGGGTCAGTACAACAATGTTCAGCTACAACCTCCGGCTGTTAATGATGAGCTTGC GGTCATGCTGCGTAGAGATCAGTATAACCTTCCAGATTTCCAAACTGAATATGAAACTGCTAAGTTTTATCTGATTAAAT CTTTCAATGAAGATGACATTCATAAGTCCGTTAAATATGATGTTTGGACAAGCACTCCCAATGGCAATAAGAAGTTGAAT GCAGCATTCCATGATGCAGAAGCTCAATTCAGTCAGACAGGCACTATGTGTCCTGTCTTTCTCTTCTTCTCGGTCAATGC TAGCAGGCAGTTTGTTGGAGTAGCTGAGATGCTAGGGCCTGTGGACTTCAAAAAAGACATGAAGTTTTGGAAACTTGACA AATACAACGGGTTCTTCCCAATTAAGTGGCATATAATTAAAGATGTTCCCAACAACAAGTTTGTGCACATAATCCTTCAA AACAATGACAACAGACCTGTAACTTTCAGCAGGGACACACAAGAGATTGGTCTGAAGGAGGGTCTGGAGATGCTGAGTAT TTTTAAAAGTTATTCAGCTAAGACATCTCTATTGGATGATTTTGATTTCTATGAGAATCGTGAGAAATTATTTCGTTCGC AAAAGAGTACTAAGCATACAAGCCCAAAGCCCCAAGTATACAACAGTGGCAATTACCATGTATACAACAATGGCAATTAC CATAACACAGTTGAGGCAAGGGAGAAGAAAATAGAGATGCAATCAAGTGATGGCACCAAGCAATTTAATCTCATCAAACT TACAAAGAACCTTTCTCTCAGTCCATCTGAAACACAACTATCTGAGAAACAACTACATGGCTTTAGATATGGCAAGATTG CTAGGTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0363800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDSSRRFSAGFAGVQESEAMPYYSSVSTSFDAQNEAVNGTVFAKHDPRSSGSVKPNSLKSTHRKGSLTSTSSKTVTDTKR DITILNKAPPLYPNFTAATPPRTYHQMGKVSSFSNPKHHFFPPTNYRPNTSTNYRSNGGVSSVNDRFLLSDKFQSGESEM SMEMTRGPRGQYNNVQLQPPAVNDELAVMLRRDQYNLPDFQTEYETAKFYLIKSFNEDDIHKSVKYDVWTSTPNGNKKLN AAFHDAEAQFSQTGTMCPVFLFFSVNASRQFVGVAEMLGPVDFKKDMKFWKLDKYNGFFPIKWHIIKDVPNNKFVHIILQ NNDNRPVTFSRDTQEIGLKEGLEMLSIFKSYSAKTSLLDDFDFYENREKLFRSQKSTKHTSPKPQVYNSGNYHVYNNGNY HNTVEAREKKIEMQSSDGTKQFNLIKLTKNLSLSPSETQLSEKQLHGFRYGKIAR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 19 19 - –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 6 6 - –
Phobius
SIGNAL_PEPTIDE_H_REGION
7 14 8 - –
PANTHER
PTHR12357:SF70
12 442 431 2.7E-214 –
PANTHER
PTHR12357
12 442 431 2.7E-214 –
Phobius
SIGNAL_PEPTIDE_C_REGION
15 19 5 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
20 455 436 - –
MobiDBLite
mobidb-lite
42 82 41 - –
MobiDBLite
mobidb-lite
50 81 32 - –
Gene3D
G3DSA:3.10.590.10
187 363 177 8.3E-65 –
ProSiteProfiles
PS50882
207 348 142 50.008
IPR007275
Pfam
PF04146
208 349 142 3.3E-34
IPR007275

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0363800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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