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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0363800 |
| Transcript ID | LotjaGi6g1v0363800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | evolutionarily conserved C-terminal region 2; TAIR: AT1G09810.1 evolutionarily conserved C-terminal region 11; Swiss-Prot: sp|P59326|YTHD1_MOUSE YTH domain-containing family protein 1; TrEMBL-Plants: tr|I3T739|I3T739_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0363800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67529438..67534613) extracted from Lotus japonicus Gifu genome v1.2.
GAGGAATGTAACCTACTTTAAAAAAAGCAGAAATAGAAAACCTAGTTTTTAGTGAGGAAGGAGATATAAATAGTGAGCAG TCGTGGTCGTGGGCCGTGGTGACCAAGTAACCGACCCTGTGTTGTCTCGTCCTCGTACTTGCCTATTCGCAGTTCTTCTA GGTTTGCTTTTTCTTTGCACTAAATCTCCAAATCTGCAACAATTGTCTGTCAGCATTCTTTATTTCTTTTCAGTTCATGT ATCAATCGATAAATTGGAATATTTTAATTCAGTAGTCGCATATTTCATTTAAACACCCCTGCTTTATTTTTCCTGATTTC TGAAGATAACTGTGTTGTGTTGTTTTCTTTCTCACTGACATGCTTTCCCCTTCCCTGTTAGGTTGATTTTGGATTTTAAC GACTGAACTTTTTTCATATTTTTAACAAGGAATCTGCGACAAGTATCCTTTGTTAATTGGCATTTGCACTGTTTTTATTG TTAATATTAATATTATAGGTCTGAACTAGTCTGCTAAAGTTGTTCTTATCAGCATTTTGAATTTCCAGAATTGGATATCT CTCTCTCTCTCTCTCTCCATGTCCTCCTCTACTCTTTCCCATCTCTTTCTTTCTTTGTGATTCTGCCCTCTTTGTTCACT GCCACCAAATAATGATAGTTTTCATCAATTTTATTTGTTGTACTATGTTTCTTGTTTTTTATTTTGTTATACTCATGTGT TTTTTTAATCCTCATCCTCATGTCTGTACGTGTGTGTATATATATTGCTAAAATTCACCAGTCTATTTATTGACAGTAAT GTAGAAGGGATATCAACATGCTAAACAGAACACAATGGAGCATGTATAAAATTGTACCTACATAACGAAATCCCAGTTAA ACCTGACTAAATATTAATTCAAAAAGTAACATACATGGTAGTCAAAATTGGAATTTTAATCTCAAAATCCTTCAAAAAGT AACATTCATGGTAGTATAAATTGAAATTTTAATCCTGAAGTCAAAGCAAAATCCCTTTAATGATTTCGAAGAAACCCGGA TTTGAATCGGGTTTCAACCCGTTTCCTTATCTAACCTTATTTAATTTAACTAATATTCCAACCCTAATATTTCCAATGCT GCCGCATTTGCTTCAACACTAAGGATTCTTCTGTGAGAGGGACTGTCTATCGTCTTCCTTGTGCTTCGTTATCTGTGAGT TCTCTGTTCTCCAGCAACTTATGGATTATGAGTTATGATTTATGAGTACAACTTTTATCCAAGTCTTTCTAGGTTATTTT TAATTTGTTTTCCTTATGTATGCTGCTTTATATGCATAAATTTTACAAAATCTTACCATTAGATTTACGATTTTGTGATT TATGATATTCGCCTGCGTCCTGATCAGGGTGCATTTGGATAAACAACGTAATTAAGCGTTTATCGCATAAGCGCTTATTC ATAAGCTTAATTTGAGAACCTTATTGAAATTAGCTCAAAATAAGGAAAAAGCCCCTAAATCACCAAGATAACTATTTTTC TCTAAAATAATAGTGACTCCAATTCACTGATGTGTCATTTTTCCCTTTTCCCACTGTTTAGGAGTTGAAGAAGACAGGTA ATGCTTTCTTCTGTCTGAAGTGGTTGCTTAAATGTAATAATCTAAAGTGAATCCCTCATCCCTAGATGAGGTTTAAAGTT AGGTGTTTCAGTGAGTCTTGGTGATTTTATTTGGTTTCTCTCTTGTTGGGTAAATTTAACTTATCATTTTGTCAATGGTA TACTTAACGTTGTGATATAGCTCAGTCGGTGTCAACAGGAGCAAGAGATTATAGTCAGCAGCGGAATGAGACACATGTGG TGACTGGCAATTGGCCACTTTATTGACTCTATCTATGAATTTGCATGTCTCTTTCTGTTTTTCTTTCTTACTTTTATTTA GCCTCCATCTCTTCAGTAAATAAGTTCTGCACATCTTTGCTATAGAAATGTCAGTGCTGTTCAAAGTTCAAACTGCAAAA TGCTCTGTTCAAAACCTTGAGCATGATAGCTCTCTGTTCATAAGTGTAAGAGAGTCTAAATTGCAGTTTGATAATCAGCA AGACGATACTTGATTGTCTGTTACACCATGGTAAACACATATAAGTCACTCGTACGAGTAGGACCCATAGTTTATCATGG ATACATATCATTTTTACAATGTTCCCAATCAGAATTGATTTTTTTTACCTCAATCTAACTAATGATGTCATCATATTCTC TTAACATTTTCATAATTCCTGCAGGTTTCAATAAAAGGTTGTATCTCATCTGATTTGACATCACCAATGGACTCTTCTAG AAGATTTTCTGCTGGGTTTGCAGGTGTGATCATACTTGTTTCTTACTTATTATATTTACTTATATGCAGCAGTTATATAA AATTTGTTTAAGACGTTATTATGCTTAACATAAGCAGAGGGTTCAAGAAGGTAGCTGATACTATTTAGTATTTCCTGTCA ATTGTGTAATAATGTAATGATTTATGATATACACATTCAATCAAAGTTCCTGGATAAGAGATATTCATGAAATAACTTTG AATGTTGTAAACCTTGGAGCATTGTGTCATGATATCAAAGTTACGCCCTTTTGTTATTTGGATGGGCATTGTGTTGGTCA ACAACTTTAACTCTCTTACACTAGGCATTTTCAACAACCAGGTGTGCAGGAATCCGAAGCCATGCCTTATTATTCATCAG TCTCAACTTCGTTTGATGCGCAAAATGAAGCTGTGAATGGTACTGTGTTTGCAAAACATGATCCGAGATCGTCTGGTTCA GTGAAGCCAAATAGCTTAAAGTCTACACATAGAAAGGGCAGTTTAACCAGCACATCATCCAAGACTGTCACTGATACAAA AAGAGATATCACAATTCTGAATAAGGTAATGCCACTCCTTGTTTACATATATTCATTTTCTGGGATGGTAGAGTTGCTGC ATTGATTGACCATGAATACTTGGGAAAGTGCTAATTCCTTCGCTTATATGGATAATTTTTACGGAATTTTTTTCTCCTAG GCCTTGTTTGCCACCTCTGGTATATATTGTTTTCTTTTATTTTATCTTCTTGTACCTAAATTATAGATGAATAAAACAGT TCCATGAACTTTACTTTGTTAATGTACTTTATATTTTCACTTTAACTGCTGCTATAGAACTAGAACGTTTTAATAAAGTG AATGTTTAATTTTGCAGGCTCCTCCTTTGTATCCTAATTTTACAGCAGCAACTCCTCCAAGGACCTACCACCAAATGGGA AAAGTTTCATCTTTTTCTAACCCAAAACATCATTTCTTTCCCCCAACTAACTACAGGCCTAACACATCTACTAACTATAG ATCAAATGGGGGAGTGTCTAGTGTAAATGATAGATTTTTGTTAAGTGACAAATTTCAGAGTGGAGAATCTGAAATGTCAA TGGAAATGACTCGAGGTCCTCGGGGTCAGTACAACAATGTTCAGCTACAACCTCCGGCTGTTAATGATGAGCTTGCGGTC ATGCTGCGTAGAGATCAGTATAACCTTCCAGATTTCCAAACTGAATATGAAACTGCTAAGTTTTATCTGATTAAATCTTT CAATGAAGATGACATTCATAAGTCCGTTAAATATGATGTTTGGACAAGCACTCCCAATGGCAATAAGAAGTTGAATGCAG CATTCCATGATGCAGAAGCTCAATTCAGTCAGACAGGCACTATGTGTCCTGTCTTTCTCTTCTTCTCGGTGAGTTCGAAT CTTTGTCCATAAATTATCTCCTGTTTTTTTTGCAGACGAAGTAGAATGTAACATGAGAAAAAAAGATGAACATTATAGAA ATTTAGATATTGATATCTTACTGGAGGTATCTTGTATTTTCTTTTCTTTTCTTTTTTGAGGTTAAATTAGCAGTTCTTGA TTTTGACCCTGGACGTACTTTGTTGTCAAATCAGGTCAATGCTAGCAGGCAGTTTGTTGGAGTAGCTGAGATGCTAGGGC CTGTGGACTTCAAAAAAGACATGAAGTTTTGGAAACTTGACAAATACAACGGGTTCTTCCCAATTAAGTGGCATATAATT AAAGATGTTCCCAACAACAAGTTTGTGCACATAATCCTTCAAAACAATGACAACAGACCTGTAACTTTCAGCAGGGACAC ACAAGAGGTAAATCTTACTTTTGAACATTATAGTAGCAGCTTTTTATTCAATTTTTTGTGAGACATGATATATCATCAAA TTCGTAATTATATGGTTTGCAGATTGGTCTGAAGGAGGGTCTGGAGATGCTGAGTATTTTTAAAAGTTATTCAGCTAAGA CATCTCTATTGGATGATTTTGATTTCTATGAGAATCGTGAGAAATTATTTCGTTCGCAAAAGAGTACTAAGCATACAAGC CCAAAGCCCCAAGTATACAACAGTGGCAATTACCATGTATACAACAATGGCAATTACCATGTAAGTTCCATTTCCTTTGT CTAGAATGCTTTTTTAATATTTCTTCAATTGAAACATAGAAGATATGCAACTTGCAAGAAGTACACACAATTGGAATATT GTGTCAATTGGAATATTGTGATGCTGTAAATATTTTTCTTTATGTTCTTGTATTAACTTTTACTTTTGTGATTATTTGTC TTTTTAACTGTGCAGAACACAGTTGAGGCAAGGGAGAAGAAAATAGAGATGCAATCAAGTGATGGCACCAAGCAATTTAA TCTCATCAAACTTACAAAGAACCTTTCTCTCAGTCCATCTGAAACACAACTATCTGAGAAACAACTACATGGCTTTAGAT ATGGCAAGATTGCTAGGTGAGCCAAAAAAGGAAAAAAGATGGTCAGAAGTTTATTTCTGCGTGTAGGGATGTTAGAATTG CAGAGTTGCGGTTTGGTAGTAGAGCTCCTCAAGCATTCGGCCTCTTATCTTATTATTATGTGATTTATGTGACTCGTCAA TATGATTTTAACATGTTTTAATTTAAGTTTGACTCATTAATATCTGTATATTGAAGAACACATTGTCTTTATATGTGGAG CTTTTTGACATTATGATTCAATGCCTCGTATGTTTTCGTATCATTATTTGGCTTTGGACTAGGTTGACCAATTGGTTTTA GGTTGATGAGTGCTCGGTTCCAAATTAGGTTGATAACTTGATATATGATCTCAAAG
CDS sequence (LotjaGi6g1v0363800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCTTCTAGAAGATTTTCTGCTGGGTTTGCAGGTGTGCAGGAATCCGAAGCCATGCCTTATTATTCATCAGTCTC AACTTCGTTTGATGCGCAAAATGAAGCTGTGAATGGTACTGTGTTTGCAAAACATGATCCGAGATCGTCTGGTTCAGTGA AGCCAAATAGCTTAAAGTCTACACATAGAAAGGGCAGTTTAACCAGCACATCATCCAAGACTGTCACTGATACAAAAAGA GATATCACAATTCTGAATAAGGCTCCTCCTTTGTATCCTAATTTTACAGCAGCAACTCCTCCAAGGACCTACCACCAAAT GGGAAAAGTTTCATCTTTTTCTAACCCAAAACATCATTTCTTTCCCCCAACTAACTACAGGCCTAACACATCTACTAACT ATAGATCAAATGGGGGAGTGTCTAGTGTAAATGATAGATTTTTGTTAAGTGACAAATTTCAGAGTGGAGAATCTGAAATG TCAATGGAAATGACTCGAGGTCCTCGGGGTCAGTACAACAATGTTCAGCTACAACCTCCGGCTGTTAATGATGAGCTTGC GGTCATGCTGCGTAGAGATCAGTATAACCTTCCAGATTTCCAAACTGAATATGAAACTGCTAAGTTTTATCTGATTAAAT CTTTCAATGAAGATGACATTCATAAGTCCGTTAAATATGATGTTTGGACAAGCACTCCCAATGGCAATAAGAAGTTGAAT GCAGCATTCCATGATGCAGAAGCTCAATTCAGTCAGACAGGCACTATGTGTCCTGTCTTTCTCTTCTTCTCGGTCAATGC TAGCAGGCAGTTTGTTGGAGTAGCTGAGATGCTAGGGCCTGTGGACTTCAAAAAAGACATGAAGTTTTGGAAACTTGACA AATACAACGGGTTCTTCCCAATTAAGTGGCATATAATTAAAGATGTTCCCAACAACAAGTTTGTGCACATAATCCTTCAA AACAATGACAACAGACCTGTAACTTTCAGCAGGGACACACAAGAGATTGGTCTGAAGGAGGGTCTGGAGATGCTGAGTAT TTTTAAAAGTTATTCAGCTAAGACATCTCTATTGGATGATTTTGATTTCTATGAGAATCGTGAGAAATTATTTCGTTCGC AAAAGAGTACTAAGCATACAAGCCCAAAGCCCCAAGTATACAACAGTGGCAATTACCATGTATACAACAATGGCAATTAC CATAACACAGTTGAGGCAAGGGAGAAGAAAATAGAGATGCAATCAAGTGATGGCACCAAGCAATTTAATCTCATCAAACT TACAAAGAACCTTTCTCTCAGTCCATCTGAAACACAACTATCTGAGAAACAACTACATGGCTTTAGATATGGCAAGATTG CTAGGTGA
Protein sequence (LotjaGi6g1v0363800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSSRRFSAGFAGVQESEAMPYYSSVSTSFDAQNEAVNGTVFAKHDPRSSGSVKPNSLKSTHRKGSLTSTSSKTVTDTKR DITILNKAPPLYPNFTAATPPRTYHQMGKVSSFSNPKHHFFPPTNYRPNTSTNYRSNGGVSSVNDRFLLSDKFQSGESEM SMEMTRGPRGQYNNVQLQPPAVNDELAVMLRRDQYNLPDFQTEYETAKFYLIKSFNEDDIHKSVKYDVWTSTPNGNKKLN AAFHDAEAQFSQTGTMCPVFLFFSVNASRQFVGVAEMLGPVDFKKDMKFWKLDKYNGFFPIKWHIIKDVPNNKFVHIILQ NNDNRPVTFSRDTQEIGLKEGLEMLSIFKSYSAKTSLLDDFDFYENREKLFRSQKSTKHTSPKPQVYNSGNYHVYNNGNY HNTVEAREKKIEMQSSDGTKQFNLIKLTKNLSLSPSETQLSEKQLHGFRYGKIAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 14 | 8 | - | – | |
| PANTHER | 12 | 442 | 431 | 2.7E-214 | – | |
| PANTHER | 12 | 442 | 431 | 2.7E-214 | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 455 | 436 | - | – | |
| MobiDBLite | 42 | 82 | 41 | - | – | |
| MobiDBLite | 50 | 81 | 32 | - | – | |
| Gene3D | 187 | 363 | 177 | 8.3E-65 | – | |
| ProSiteProfiles | 207 | 348 | 142 | 50.008 | ||
| Pfam | 208 | 349 | 142 | 3.3E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi6g1v0363800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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