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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0263569 |
| Transcript ID | Lj0g3v0263569.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: expansin-A16-like [Glycine max] gi|356542918|ref|XP_003539911.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 22 | 22 | – | – | |
| Phobius | 1 | 2 | 2 | – | – | |
| Phobius | 1 | 21 | 21 | – | – | |
| Phobius | 3 | 14 | 12 | – | – | |
| PANTHER | 8 | 253 | 246 | 1.60E-193 | – | |
| PANTHER | 8 | 253 | 246 | 1.60E-193 | – | |
| Gene3D | 14 | 153 | 140 | 8.50E-42 | ||
| Phobius | 15 | 21 | 7 | – | – | |
| Phobius | 22 | 254 | 233 | – | – | |
| SUPERFAMILY | 26 | 177 | 152 | 6.28E-43 | ||
| PRINTS | 26 | 41 | 16 | 3.20E-35 | ||
| PRINTS | 44 | 62 | 19 | 3.20E-35 | ||
| ProSiteProfiles | 45 | 159 | 115 | 27.74 | ||
| PRINTS | 57 | 71 | 15 | 9.60E-52 | ||
| SMART | 62 | 149 | 88 | 4.10E-42 | ||
| Pfam | 63 | 149 | 87 | 2.10E-18 | ||
| PRINTS | 66 | 84 | 19 | 3.20E-35 | ||
| PRINTS | 84 | 95 | 12 | 9.60E-52 | ||
| PRINTS | 98 | 108 | 11 | 9.60E-52 | ||
| PRINTS | 117 | 134 | 18 | 9.60E-52 | ||
| PRINTS | 134 | 147 | 14 | 9.60E-52 | ||
| PRINTS | 142 | 158 | 17 | 3.20E-35 | ||
| Gene3D | 154 | 250 | 97 | 6.70E-31 | ||
| SUPERFAMILY | 156 | 248 | 93 | 4.97E-31 | ||
| PRINTS | 158 | 170 | 13 | 9.60E-52 | ||
| Pfam | 161 | 237 | 77 | 2.00E-23 | ||
| ProSiteProfiles | 169 | 248 | 80 | 20.705 | ||
| PRINTS | 170 | 191 | 22 | 9.60E-52 | ||
| PRINTS | 196 | 210 | 15 | 3.20E-35 | ||
| PRINTS | 205 | 226 | 22 | 9.60E-52 | ||
| PRINTS | 234 | 248 | 15 | 3.20E-35 | ||
| PRINTS | 234 | 250 | 17 | 9.60E-52 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of Lj0g3v0263569.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0263569.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.