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Lj0g3v0353789.1

Overview

Field Value
Gene ID Lj0g3v0353789
Transcript ID Lj0g3v0353789.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Tir-nbs-lrr resistance protein [Medicago truncatula] gi|357468511|ref|XP_003604540.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF52540
5 263 259 1.19E-50
IPR027417
PANTHER
PTHR11017:SF163
6 544 539 1.90E-262 –
PANTHER
PTHR11017
6 544 539 1.90E-262 –
Pfam
PF00931
18 283 266 6.50E-31
IPR002182
Gene3D
G3DSA:3.40.50.300
30 186 157 3.20E-06
IPR027417
PRINTS
PR00364
36 51 16 2.10E-20 –
PRINTS
PR00364
111 125 15 2.10E-20 –
PRINTS
PR00364
204 218 15 2.10E-20 –
SUPERFAMILY
SSF46785
240 349 110 3.81E-11
IPR011991
SUPERFAMILY
SSF52058
366 676 311 1.47E-31
IPR032675
Gene3D
G3DSA:3.80.10.10
376 676 301 5.90E-23
IPR032675
PRINTS
PR00364
521 537 17 2.10E-20 –
PANTHER
PTHR11017:SF163
582 830 249 1.90E-262 –
PANTHER
PTHR11017
582 830 249 1.90E-262 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0043531
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj0g3v0353789.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0353789.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.