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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0009300 |
Transcript ID | LotjaGi1g1v0009300.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G27690.2 photosystem II light harvesting complex protein 2.3; Swiss-Prot: sp|P27520|CB215_PEA Chlorophyll a-b binding protein 215, chloroplastic; TrEMBL-Plants: tr|I3T0E0|I3T0E0_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0009300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1207643..1208592) extracted from Lotus japonicus Gifu genome v1.2.
CTAAATATGCAATAAATCATATTAAAGGCTAATAGCTCATGATATAGCAATTACATATAGTTATGTTTGTCTTGTAAAGT TTAAAAATAACATCCTGTGCAAACATTTGAAGTGAGGTCCTGACAACTTGTTTCAGAATGTAATAACATGTTGGTTGAGC TTATTTTTCTCAAAATCAATTCTGACGTCAAGTTTAGGAGAAACTTTTGTTCATAATTGATTTTGGCTTTGGAATCAATT ATAAAAGAATTTCCGAAAATACACTCACTGACTTGGCATGACCTCTTGTTAAAAACAGGTATGGCCCTGACCGTCCCAAG TACTTGGGTCCTTTCTCTGAGCAAATTCCATCATACCTGACTGGTGAATTCCCTGGTGACTACGGATGGGACACAGCTGG ATTATCAGCTGACCCCGAAACCTTCGCCAAGAACCGTGAGCTCGAGGTGATTCACAGCAGATGGGCCATGCTTGGTGCCT TGGGATGCACCTTCCCAGAAATCCTTGAAAGGAATGGTGTCAAATTCGGTGAGGCAGTGTGGTTCAAGGCTGGTGCCCAG ATCTTCTCTGAGGGTGGCCTTGACTATTTAGGCAACCCAAACCTGATCCATGCTCAGAGCATCCTTGCAATCTGGGCTAC TCAGGTTGTGCTCATGGGATTAATTGAAGGCTACAGGGTTGGTGGAGGACCCCTTGGTGAAGGACTAGACCCACTTTACC CAGGTGGTGCCTTTGACCCACTTGGTTTGGCTGATGACCCTGATGCATTTGCAGAGTTGAAGGTGAAGGAACTCAAGAAC GGTCGATTGGCAATGTTCTCCATGTTTGGCTTCTTTGTTCAGGCCATTGTTACTGGCAAGGGCCCTATTCAGAACCTTTA CGACCATGTTGCTGACCCTGTTGCCAACAATGCTTGGGCTTTTGCCACTAACTTCGTCCCTGGACAATGA
CDS sequence (LotjaGi1g1v0009300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGGCCCTGACCGTCCCAAGTACTTGGGTCCTTTCTCTGAGCAAATTCCATCATACCTGACTGGTGAATTCCCTGG TGACTACGGATGGGACACAGCTGGATTATCAGCTGACCCCGAAACCTTCGCCAAGAACCGTGAGCTCGAGGTGATTCACA GCAGATGGGCCATGCTTGGTGCCTTGGGATGCACCTTCCCAGAAATCCTTGAAAGGAATGGTGTCAAATTCGGTGAGGCA GTGTGGTTCAAGGCTGGTGCCCAGATCTTCTCTGAGGGTGGCCTTGACTATTTAGGCAACCCAAACCTGATCCATGCTCA GAGCATCCTTGCAATCTGGGCTACTCAGGTTGTGCTCATGGGATTAATTGAAGGCTACAGGGTTGGTGGAGGACCCCTTG GTGAAGGACTAGACCCACTTTACCCAGGTGGTGCCTTTGACCCACTTGGTTTGGCTGATGACCCTGATGCATTTGCAGAG TTGAAGGTGAAGGAACTCAAGAACGGTCGATTGGCAATGTTCTCCATGTTTGGCTTCTTTGTTCAGGCCATTGTTACTGG CAAGGGCCCTATTCAGAACCTTTACGACCATGTTGCTGACCCTGTTGCCAACAATGCTTGGGCTTTTGCCACTAACTTCG TCCCTGGACAATGA
Protein sequence (LotjaGi1g1v0009300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNGVKFGEA VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAE LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 217 | 216 | 4.0E-152 | – | |
SUPERFAMILY | 2 | 214 | 213 | 5.62E-77 | – | |
PANTHER | 2 | 217 | 216 | 4.0E-152 | ||
Gene3D | 8 | 210 | 203 | 6.3E-96 | ||
Pfam | 18 | 183 | 166 | 2.4E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0009300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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