Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001344
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 46 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.485s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0021579.1
n.a. PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cicer arietinum] gi|502147415|ref|XP_004506774.1| chr0 8730851 8733064 -
2 domain predictions
2 GO terms
Lj0g3v0227359.1
n.a. PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like [Cicer arietinum] gi|502084262|ref|XP_004487657.1| chr0 117443828 117444844 -
2 domain predictions
2 GO terms
Lj0g3v0227369.1
n.a. PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like [Vitis vinifera] gi|225461315|ref|XP_002284493.1| chr0 117444068 117446169 -
2 domain predictions
2 GO terms
Lj0g3v0260539.1
n.a. n.a. chr0 135321422 135335302 -
2 domain predictions
2 GO terms
Lj0g3v0260539.2
n.a. n.a. chr0 135332601 135335322 -
2 domain predictions
2 GO terms
Lj0g3v0309549.1
n.a. PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like isoform X2 [Cicer arietinum] gi|502086073|ref|XP_004488100.1| chr0 161604010 161605190 +
2 domain predictions
2 GO terms
Lj1g3v0514170.1
n.a. PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like [Glycine max] gi|356516812|ref|XP_003527087.1| chr1 6541038 6542677 -
2 domain predictions
2 GO terms
Lj1g3v0948600.1
n.a. PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like [Glycine max] gi|356501755|ref|XP_003519689.1| chr1 11914907 11917182 -
2 domain predictions
2 GO terms
Lj1g3v1650110.1
n.a. Chlorophyll a-b binding protein [Medicago truncatula] gi|357465507|ref|XP_003603038.1| chr1 19767793 19769691 -
2 domain predictions
2 GO terms
Lj2g3v0509060.1
n.a. PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Cicer arietinum] gi|502162710|ref|XP_004512591.1| chr2 6861489 6864787 -
2 domain predictions
2 GO terms
Lj2g3v3337560.1
n.a. Chlorophyll a/b binding protein [Medicago truncatula] gi|357495319|ref|XP_003617948.1| chr2 42382011 42384724 +
2 domain predictions
2 GO terms
Lj3g3v0681380.1
n.a. PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like [Vitis vinifera] gi|225461315|ref|XP_002284493.1| chr3 7393354 7395487 -
2 domain predictions
2 GO terms
Lj3g3v2531180.1
n.a. PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like isoform 1 [Glycine max] gi|356559462|ref|XP_003548018.1| chr3 31067285 31069550 +
2 domain predictions
2 GO terms
Lj4g3v0338370.1
n.a. PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Solanum lycopersicum] gi|460369476|ref|XP_004230588.1| chr4 4341302 4341505 +
2 domain predictions
2 GO terms
Lj5g3v0279160.1
n.a. PREDICTED: chlorophyll a-b binding protein type 1 member F3, chloroplastic-like isoform X2 [Cicer arietinum] gi|502126497|ref|XP_004499329.1| chr5 2336856 2347051 +
2 domain predictions
2 GO terms
Lj5g3v0279160.2
n.a. PREDICTED: chlorophyll a-b binding protein type 1 member F3, chloroplastic-like isoform X2 [Cicer arietinum] gi|502126497|ref|XP_004499329.1| chr5 2336943 2347051 +
2 domain predictions
2 GO terms
Lj5g3v0279160.3
n.a. PREDICTED: chlorophyll a-b binding protein type 1 member F3, chloroplastic-like isoform X2 [Cicer arietinum] gi|502126497|ref|XP_004499329.1| chr5 2336943 2347051 +
2 domain predictions
2 GO terms
Lj6g3v0524040.1
n.a. PREDICTED: chlorophyll a-b binding protein CP29.3, chloroplastic-like [Fragaria vesca subsp]. vesca] gi|470143965|ref|XP_004307637.1| chr6 5252445 5254730 +
2 domain predictions
2 GO terms
Lj6g3v0524040.2
n.a. PREDICTED: chlorophyll a-b binding protein CP29.3, chloroplastic-like [Glycine max] gi|356568441|ref|XP_003552419.1| chr6 5252673 5254730 +
2 domain predictions
2 GO terms
Lj6g3v1176180.1
n.a. PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like isoform X2 [Cicer arietinum] gi|502086073|ref|XP_004488100.1| chr6 14335466 14337441 +
2 domain predictions
2 GO terms
LotjaGi1g1v0009300.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT2G05100.1 photosystem II light harvesting complex protein 2.1; Swiss-Prot: sp|P27520|CB215_PEA Chlorophyll a-b binding protein 215, chloroplastic; TrEMBL-Plants: tr|I3T0E0|I3T0E0_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0009300 LjG1.1_chr1 1204862 1210225 -
2 domain predictions
2 GO terms
LotjaGi1g1v0009300.2
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G27690.2 photosystem II light harvesting complex protein 2.3; Swiss-Prot: sp|P27520|CB215_PEA Chlorophyll a-b binding protein 215, chloroplastic; TrEMBL-Plants: tr|I3T0E0|I3T0E0_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0009300 LjG1.1_chr1 1207643 1208040 -
2 domain predictions
2 GO terms
LotjaGi1g1v0009300.3
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G27690.2 photosystem II light harvesting complex protein 2.3; Swiss-Prot: sp|P27520|CB215_PEA Chlorophyll a-b binding protein 215, chloroplastic; TrEMBL-Plants: tr|I3T0E0|I3T0E0_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0009300 LjG1.1_chr1 1207643 1208592 -
2 domain predictions
2 GO terms
LotjaGi1g1v0172100.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G61520.1 PSI type III chlorophyll a/b-binding protein; Swiss-Prot: sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplastic; TrEMBL-Plants: tr|I1JJU8|I1JJU8_SOYBN Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0172100 LjG1.1_chr1 32772444 32775247 -
2 domain predictions
2 GO terms
LotjaGi1g1v0220700.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A4; Swiss-Prot: sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic; TrEMBL-Plants: tr|I3S9Y6|I3S9Y6_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0220700 LjG1.1_chr1 49055550 49059482 +
2 domain predictions
2 GO terms
LotjaGi1g1v0354800.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G45474.1 photosystem I light harvesting complex protein 5; Swiss-Prot: sp|Q9C639|LHCA5_ARATH Photosystem I chlorophyll a/b-binding protein 5, chloroplastic; TrEMBL-Plants: tr|I3T4S4|I3T4S4_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0354800 LjG1.1_chr1 82639070 82647165 -
2 domain predictions
2 GO terms
LotjaGi2g1v0103000.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G54890.1 chlorophyll a-b binding protein 6; Swiss-Prot: sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chloroplastic; TrEMBL-Plants: tr|I3S050|I3S050_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0103000 LjG1.1_chr2 34618798 34622054 +
2 domain predictions
2 GO terms
LotjaGi2g1v0118900_LC.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A4; Swiss-Prot: sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic; TrEMBL-Plants: tr|I3S9Y6|I3S9Y6_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0118900_LC LjG1.1_chr2 43531430 43532356 +
2 domain predictions
2 GO terms
LotjaGi2g1v0128900.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G29930.1 chlorophyll A/B binding protein 1; Swiss-Prot: sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chloroplastic; TrEMBL-Plants: tr|A0A089WZX0|A0A089WZX0_KALFE Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0128900 LjG1.1_chr2 47119559 47120672 -
2 domain predictions
2 GO terms
LotjaGi2g1v0128900.2
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G29930.1 chlorophyll A/B binding protein 1; Swiss-Prot: sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chloroplastic; TrEMBL-Plants: tr|A0A089WZX0|A0A089WZX0_KALFE Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0128900 LjG1.1_chr2 47119678 47120415 -
2 domain predictions
2 GO terms
LotjaGi2g1v0129100.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G29930.1 chlorophyll A/B binding protein 1; Swiss-Prot: sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chloroplastic; TrEMBL-Plants: tr|Q1KLZ3|Q1KLZ3_9ROSI Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0129100 LjG1.1_chr2 47130831 47133699 +
2 domain predictions
2 GO terms
LotjaGi2g1v0129100.2
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G29910.1 chlorophyll A/B binding protein 3; Swiss-Prot: sp|P04782|CB24_PETSP Chlorophyll a-b binding protein 25, chloroplastic; TrEMBL-Plants: tr|M1B1H4|M1B1H4_SOLTU Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0129100 LjG1.1_chr2 47131072 47131823 +
2 domain predictions
2 GO terms
LotjaGi2g1v0162400.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT4G10340.1 light harvesting complex of photosystem II 5; Swiss-Prot: sp|Q9XF89|CB5_ARATH Chlorophyll a-b binding protein CP26, chloroplastic; TrEMBL-Plants: tr|A0A067L139|A0A067L139_JATCU Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0162400 LjG1.1_chr2 56826761 56830667 -
2 domain predictions
2 GO terms
LotjaGi3g1v0078700.6
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT5G54270.1 light-harvesting chlorophyll B-binding protein 3; Swiss-Prot: sp|P27489|CB23_SOLLC Chlorophyll a-b binding protein 13, chloroplastic; TrEMBL-Plants: tr|I3T7A0|I3T7A0_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi3g1v0078700 LjG1.1_chr3 8678543 8680400 -
2 domain predictions
2 GO terms
LotjaGi3g1v0210100.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G08940.2 light harvesting complex photosystem II; Swiss-Prot: sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chloroplastic; TrEMBL-Plants: tr|Q9XQB2|Q9XQB2_VIGRR Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi3g1v0210100 LjG1.1_chr3 31275892 31277895 +
2 domain predictions
2 GO terms
LotjaGi3g1v0210100.2
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G08940.2 light harvesting complex photosystem II; Swiss-Prot: sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chloroplastic; TrEMBL-Plants: tr|Q9XQB2|Q9XQB2_VIGRR Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi3g1v0210100 LjG1.1_chr3 31275899 31294433 +
2 domain predictions
2 GO terms
LotjaGi3g1v0210100.3
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G08940.2 light harvesting complex photosystem II; Swiss-Prot: sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chloroplastic; TrEMBL-Plants: tr|Q9XQB2|Q9XQB2_VIGRR Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi3g1v0210100 LjG1.1_chr3 31276060 31277901 +
2 domain predictions
2 GO terms
LotjaGi3g1v0324800.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT5G54270.1 light-harvesting chlorophyll B-binding protein 3; Swiss-Prot: sp|P27489|CB23_SOLLC Chlorophyll a-b binding protein 13, chloroplastic; TrEMBL-Plants: tr|V7AJY3|V7AJY3_PHAVU Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi3g1v0324800 LjG1.1_chr3 69105656 69107992 -
2 domain predictions
2 GO terms
LotjaGi3g1v0405600.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G61470.1 photosystem I light harvesting complex protein; Swiss-Prot: sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloroplastic; TrEMBL-Plants: tr|I3T043|I3T043_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi3g1v0405600 LjG1.1_chr3 80909722 80914059 +
2 domain predictions
2 GO terms
LotjaGi3g1v0405600.2
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G61470.1 photosystem I light harvesting complex protein; Swiss-Prot: sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic; TrEMBL-Plants: tr|I3T043|I3T043_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi3g1v0405600 LjG1.1_chr3 80909791 80916203 +
2 domain predictions
2 GO terms
LotjaGi4g1v0026000.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT2G34430.1 light-harvesting chlorophyll-protein complex II subunit B1; Swiss-Prot: sp|P27490|CB28_PEA Chlorophyll a-b binding protein 8, chloroplastic; TrEMBL-Plants: tr|Q9ZP08|Q9ZP08_CICAR Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi4g1v0026000 LjG1.1_chr4 3185937 3188390 +
2 domain predictions
2 GO terms
LotjaGi4g1v0026000.2
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT2G34420.1 photosystem II light harvesting complex protein B1B2; Swiss-Prot: sp|P27490|CB28_PEA Chlorophyll a-b binding protein 8, chloroplastic; TrEMBL-Plants: tr|Q9ZP08|Q9ZP08_CICAR Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi4g1v0026000 LjG1.1_chr4 3186048 3186842 +
2 domain predictions
2 GO terms
LotjaGi5g1v0000500.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G76570.1 Chlorophyll A-B binding family protein; Swiss-Prot: sp|P22686|CB2_CHLMO Chlorophyll a-b binding protein of LHCII type I, chloroplastic; TrEMBL-Plants: tr|C6TAC2|C6TAC2_SOYBN Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi5g1v0000500 LjG1.1_chr5 116928 123412 -
2 domain predictions
2 GO terms
LotjaGi6g1v0073100.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT2G40100.1 light harvesting complex photosystem II; Swiss-Prot: sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3, chloroplastic; TrEMBL-Plants: tr|A0A1J7IJ62|A0A1J7IJ62_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0073100 LjG1.1_chr6 13899024 13901930 -
2 domain predictions
2 GO terms
LotjaGi6g1v0222800.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G19150.1 PSI type II chlorophyll a/b-binding protein (Lhca2-1); Swiss-Prot: sp|Q8LCQ4|LHCA6_ARATH Photosystem I chlorophyll a/b-binding protein 6, chloroplastic; TrEMBL-Plants: tr|I3SQC8|I3SQC8_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi6g1v0222800 LjG1.1_chr6 52758908 52761377 +
2 domain predictions
2 GO terms
LotjaGi6g1v0353900.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G15820.1 light harvesting complex photosystem II subunit 6; Swiss-Prot: sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A, chloroplastic; TrEMBL-Plants: tr|I3SMI3|I3SMI3_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi6g1v0353900 LjG1.1_chr6 66592047 66597210 -
2 domain predictions
2 GO terms