Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0011000 |
Transcript ID | LotjaGi1g1v0011000.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Importin subunit alpha; TAIR: AT1G51350.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q05AL1|ARMC8_DANRE Armadillo repeat-containing protein 8; TrEMBL-Plants: tr|G7K4V1|G7K4V1_MEDTR Armadillo/beta-catenin-like repeat protein; Found in the gene: LotjaGi1g1v0011000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1362928..1369877) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCGGCCACTCGCCCCGCCTCCGATCTCATCCTCGACCGCCTTCTCTCCATTTCCTCCTCCGATTGCCAAGTCAAGCT CAAGGCCATCCGAGAGATCAAGAACCAGATCATCGGCAACCGCACCAAGAAGCTCTCCTACATCAAGCTCGGCGCCGTCC CCGCCGTCGCCGCAGCTCTTACCGGAGCCGATGCCAGTTCCGATTGCGGCTCCAGCCTCATCGTTCAGTCCGCCGCCGCG CTCGGCAGCTTCGCATGCGGCGTCGACGCCGGCGTCCGCGCCGTCCTTGACGCCGGTGTGTTCCCTCACCTGATCAGGCT CCTCTCTGCCGCTGATGAGAAGGTCAGTCGGTTCTGTTAATTACAACGTTCTTTGATTTTGCTACCATGAATTAGCGGTT AAGAGGAAATTGCAATGCAGATTGTTAGGTTAAGATGAAATGTAGATGATTTGATCCAATGTTTATATTGTTTATTGCTT ATGATGATATATTGGGAAATTGGAATGTTAATGTTAATGTGTTTATCTCAAAATCAGCTATCTATTGATTCAAATTTTGA TTTCAGGTTGTGGATGCAGCTGCGCGCTCTTTACGAATGATTTATCAATCGAAACTCGCGCCGAAGTTTGATTTTTTTCA TGAGGCAAACATGGAGTTTCTTCTTTCGCTATTTAAGAGTGAGAATGAGAATCTTGCCGGGCTAGGTGCGAGCATTATTA TTCATTCCTGCGAGACAAGTGACGAACAAAATGTAGTATGTTCTGCTGGTGCTTTAGAGAAACTTATGGGCCTTCTTGAT GGTTCTATAACCCAGAGAGATGCTAGTTTAGAGTCCCTAGCTACTATTCTTAAGAACAATCTAGGAGCCGTCTCGAAATT TGTTGAGCTTCAAAATGGAAGAGCTTTGAGTTCTGTAATTGAATTGACGAAGGACAGATGTCCGAGGACAAGGTTACTAG CTTGCTTGTGCTTGATTTGTGTAAAGAATTCTTCATCTTGCTATCTTCAAGATATAGGAATCAAGGCCAAACTGATTCAT ATTTTGCTTGAGCTCCTTGATGATTCTGGTCAAGTTGGAGACGAGGCTTCCTTTGCTTTTTCGAGTTTACTTGCGGAAAA GGAAGATTTGCATAAGTTAGCATTTGAGGCAAATGCTATCGACAAGCTCTACAATCACTTACAAAATTGTGCTTTGCATC CCAAACGTCTTGAAGGGATATTTCTAGCATTAGCTAATCTTTGCTCAAAATTGGAATGCTGCAGGTCTAAGTTTCTTTCA TTGCAGGTCTGTTGTTTTGTGCGAATATACATTTTTCAGTCCCCTCCCCCATAAATATTATTGTATTCTTTGCTGCAAAA TTAACTGATGAAAATCGAAAAGAATACCTGCCAAGGTAGTCAAAATCGAGGTTTATATCTAAAGTGGAGAGGGGTCGTGA ATCGTAAATTGCTAAATTGTAAGATTTAGTAAATTTTGCTATTCATATACGTATTTAAATTCTTATGTGCACATAAAACA GCATAAATAACCAAAACTCTTAGGAATGTCATATATAAATCATAAAGTGTCATAAAACGTAACTCGTAATTCATAGGAGT GTCATACATAAGTCATAAACTACTAATCCAAACACCATAAAACTTAGGAAGCATGAAACTATCAAGCCATAAAACTTAAA CATCCAACTTAAGCTAGGAAATGGTTTAGCATGGTTTAAGATTTAGTGAGCACTCAAAGCGGCCAGGGGTCCAGAATCGC TAAATCGTTCACATTAATGCTTCATAGCGCGATTTTGACTACCTTGATACCGGCAGTTAGACACTTCTATAATCGTAGAG ATGTCAATATTATGACTACACGAGGCAAGATGGGATATGAATATGATCAATAGAGAGAAAGTTGAGGTAGCTCAAATTGT AGAAAAGATGGTAGACTATTTTCTTCGGTGGGTTTGCGATGTGTTGAGAAGATATGGAGAAGAGCTAGTAAGGAGGGTTG ACCAAATGGGAAACAGTCCGTTAGTTAGCGGTAGAGTGAGACCAAGAGAAACTATAGGTCAAATCATTTAGAGATGTTAG GTAATACAGTATTGTGATTTTTTTGATAAGCCAAAATGTATTCTATCATACGCACAAAGGGTGCTTAAAATCCATATACA TGAGAGAGTTACAAAAGACTAAATTAGCATACACAAACAAAGAAACCTTTGACATAACCACTACTAAGTCATAAACCTCT AACAACTGCTTTGACACAGATTAAGTTTAGGCCTCCCTTCTGCTATTTTAGCTGTTCTAAAGTAGGCTTAAATATGTTTT TAGTCCCTACATTTCAAAACGTGCTGATTCGATCCCCAGCTTTCTAACATAGGTGATTTTAGTCCTTGCCGTCGGTCTTC GTTACAAAAAAGGTGACGAGGCTGACATAGCTTGTTTTCTCTCTCCTAGTGGAATTACACGAAATATAAATAAAATAAAA CATTGCCACATCACTTAATTCATTCATTTAAACCCTAATTCCCAAATTTTCCCCCAATTTCTCCCCTTTCATACGAGAAC CCTAGCTCCTGATTTCACTATTCCCTTCTCTCATCAACATCATTTGCAGCAATCTTCTTCCAATTCTTCACCCTTTGCTT CAGTCCCTACTCTGATTTAACTGCAACAGCATGAAGGAGGCTGCTCGATCTTTCGAACAGAAGAGAATGATGTATGTGAG AACTTCATCTTCATCCTATGCGCCATCGTCGAAGGCGCGCGGCTGTACCGAGTGAGTTCTACCTCCTATACCCCACTCAC TCTTTGATTGGAAAAAATGTGAACACTAAAGAGGAAATCCATGGTCCCCACCCCCATTATTCAATATAATCACGCACACT ATTATAAACCCTTACAAATCAATGGTCCCCATACCCATAGCCATTTGCACATAGTTTAACCATTTAAAGGAAAGGTTTTT ACTTACTTGCTCTTCTCGAACAGCAAACACAGTGAAGCAACACAGAAGCACCAACGAACCACCGAGGCACCGCCGTCACA CCCTCGTCGTTGACACCTCAACGACCACGATCAAGCACCAATCAGACAGATGATGAAGAAAACGAAGGGAAAGTCGAACA GAACTCTCGGGTTTTCTTTCTTCTCTGAATGTTTACGGAGGGTTAAGCTCAAAGAAGGTAAATGTGGAAAAAATGGGAAT TAGGGTTAAATGAATGAATTAAGTGGTGTGGAAATGTTTTATTTTTAATTATATTTCTTGTAATTCCACTAGGAGAGAGA AAACAAGCTCCGTCAGCGTCGTCCCCTTTTTTTTTTGTAACGAAGACTGACAGCAGGAACTAAAACCACCTATTCTAGAA CGTTTAGGATCGAATCAGCACGTTTAGAAATGTAGGGGCTAATGCCAAAGGACCCCTATTTTGTAGGGACCAAAAACATG TTTAAGCCTTCTAAAGTATTATGATGTATTGTCGTCTTGTGATTCATGGAGCCAACCCCATTTAATGAGAAAAGACTTGG TTGTTGTTGACTTGTCGTATTGATCAAATTGTTCTTTTCATGATATAATATTTTATCATGCCACCATGAACATATTTGAA TTAATCCAATGTGTTCCTTTAAGATACACAATAATCAGTTTTGTGTTTCTTTTCAGTTTTTGCACCAGTAACCTATACAT GTGGATACTAAGTCTGCTTGCAATTCCTTCTACTCTTTTTTATGAACACAGGTGTTGAATCTTTTAATTGATGCCTTAAC CCATGATGAGGCCAATGTACGTGCCGCAGCTTGCATTTGCTTAAGAAGTGTGTCTCGCTCAGTCAAGGTCTGCAACTTGC AACTAATGGCACTTGAAGTCTTTTATGCTATGTATAACTTAGTTCTTATAAATTTGCATTCAGAATTTAAGTGCAGGTTG TTTTATGAATGAAAAGATTGTAATTCCATTGTTTCGGCTTCTCTCTGATCATTCTACTTCTGTCCAGGTATGTCTTATTT TATTTTTGCATTTAATTAACTCAATTAGTTGCTAGGTTTCTTTCATCAAAAAATGCTTAAAAGAATCTGTCAATCACACT GAAGAGTTAGAAATTAATTTCAGAGTCGGAGGTTGAAAAAGTCAATTTAATATGTGCCTCTTACATATATAATTTTATGT TACTATTGTTCATGCTAGTCTCATGATTATTTATATGCTATTTTCTTGCCTGTTAATGTATATCAAACTTGAAATTGAAA TAACTCAGAGATTAGGTTTTTTGCTTGTCTGGTTGATTAATTAAGATGGTCTATAGTTTATCTGCCTAATGATTGGGAAG TTTAACAGATAGTTTTTCGTTATGATTTGAAAGATATATTCAATTAGGACTCGTGTAATTTCTGTAGTATCTGTGTTCAT TTTGTGTTTGTGCCACCTATCTTAATAGTTTCCAAGTTTTATTTTTGAATTTATCATAATTTATCCACTGTTTGGTGCTG GTTTTATAGACCATCGTCTATTCAAGGCCATACATGCTGGTGTTAAGTATTTTTAACAATCCCCTCTTTAACATAGTTGA ATAGTTCAGTTCTAAGGGTTTAAAACTTAGCCTTGAATTTGGAAGTATGGGATGGAAGATATATTGGATTTGATGCAGAG TAGGGGGGAGCTTATTTAAAGTGCTAATTTTTGGATTTAAACTGTTGCAAAATACGACATTCAGAATACAGGATTCAAAA GAGGGATTTTGATTTGCTGGACACTTTTTCTTTAATAATATTTGAACCGTGTTGTCAAATAGATAAAAAAAATGTATTAC AATAAAATCTGATATTGTAAAACAAACTCAATCTGCTGAGCACTAGGAGTATTATGTCGCATTAGATATATCGTATCTTG TTCAAATGAGGTTATAACAAAGGACATTTATGCCTATTTATTAATTATACCTAGAAGCTTACCTTTTATTAGATCCAACA TGACCTCTGCTCTGCAACACTTCGATTTTCCCTCAAAGTTATACTTCCTTGATTACTCATATTTAAAGTGATTTTCATTT TCCCTCATTAGCTCTATTAAAACTTAGTAAGGACAACTTTTTCTGTGTTTTCTTCCAGGTTGCGGCCCTTGGTGCTATTA GCAACATAGTGGTTGACTTTAAACCCCATAAGTCAACATTCATACAATGCGGAGGCATTAAAGAGCTTGTCCAATTCACA AAGTCTATGGATTCGTCTTTGAGATTGAATGCTGTATGGGTCCTAAGGAACATGGTATTTCTTGCAGATAAGAGTTGTAA GGAAGGAATTTTTATGGAGTTGACAGTGTCTACATTAGCTAGCCTCATCTGTGGTAATGATCTTCGTTGTCAGTTCATTT TTTTTTTCTTCTGATTAATTGGTCCCTGGCAAAGAAAGTCATCATTGGTTCTGTATACCCTGCAGATCCTGAGCCTTCTG TTCAAGAGCAAGCTCTAGCCCTTGTTCGCAATTTTATTGATGGAAGTATTGATTGTATTGAATATGCTTTTGCTGGAGAT GGTATCATACTGGATGCTGTTGGAAGGCAATTGCAAAAATCCTCAAAAGTTGAAATTGGGATACAGGTGGGAAATAAATT TTGAACTAATTAGTCATTTGTGGAAATCAGACATTACTATTGGCACTGCTATAAATGTTATTTAGTAATAGTAAATATGG AAATGTTAGGATATTTTATGATTCTTATATTCTTCCTTTTTTGTACTACCTCTTTCTTTCCTTTTTGGGGTTAAATCATG CATAGGAGCTGCAAGCTCTTGGGTTGGGGAGGAGGGGCAGGTGGGATGATGGAGGATGGGACCTCTTACATCAGAATCAC ACCCAAGTCTAAAGACTTGGGCAAGTGCCAATTGAGCTACAGCCTTGTTGGCACTTCTTTCCACCATTTATTAATAGCTT TTTATCTAAAAAAATTTGTGGTTTTTTCTCTTGATTTTAGGCTAGTATTCTGTCGGAGCATGGTTAGTGTCTTATTAGTT GCTTATTGGATGATGAATGTGCATCTCATAGTGTATAAAATAATAAAATAATTAATATTAATTTTTTATTGCAATTGTAA ATATTGTTTACTTTTGTATAGAATGTTTACAGGCGAACAAGACACCCACTTTAATCAATTTCCCTTACTTGTATGGTTCA ACAACAATGTATATAGCACCTTGGGAATGTGGTGCTGTTTATTTATTTATTTATTTATTATTAATGTTATTATTTTCTGG TATATCAACAGAGAAATTCAGCAAATTTTTGAAATTGTGTTATTCACTAGTCAAGTATGCTTACTGATCCTTTCATGTAG CAGGACAATCTGTTTTAATGATATATCTAGCTAGCCATTACTTTATTTTGATATAATTTTTTTTAGTTATTGTAAAATAC TACAAATTAAAACTATTGTTACAGTCTGTTATTTTGAAACTGTCCCATACAAATATTTCAACATTTCTCAGTAGGAGGTA TAAAAGGTTAACAGAGTTTTTATTCAAGCTGATTAATGATGCCTTTGTTTTTATTTTCTGTGTAGGGAATGTACACACTA AGCAATATTGCAAGTGGAAATGAGTTTCATAAAGAAGCCATAATGCAGCTACTCTTTCCACAAGCAGAAGATGGGTCAAA CTCTTTCTTGAGCCAGTTTTTGCAGAGTAATGACAATGATTTACGCGCATCTGCTCTCTGGGTCATAGTAAATCTGACAT TTCCTTCAAGTCGCGGTGCATTTAGTCGGATTGTAAAACTGCGTAATCTTGGCATTGTTTCTCAAGTCAAGAGGATGGTC AATGATTCTTGCATGGATGTGAAGGTCCTTTAATCTTCATTGTAAATTGGTTTTTGTTATATGCTTCTTTTAGTCATTTT GTATATTTTTCTTATGCAGCTTCGGGCAAGACTTGCACTTGGGCACATTATTACTTTTGGTGATAGTTAA
CDS sequence (LotjaGi1g1v0011000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGGCCACTCGCCCCGCCTCCGATCTCATCCTCGACCGCCTTCTCTCCATTTCCTCCTCCGATTGCCAAGTCAAGCT CAAGGCCATCCGAGAGATCAAGAACCAGATCATCGGCAACCGCACCAAGAAGCTCTCCTACATCAAGCTCGGCGCCGTCC CCGCCGTCGCCGCAGCTCTTACCGGAGCCGATGCCAGTTCCGATTGCGGCTCCAGCCTCATCGTTCAGTCCGCCGCCGCG CTCGGCAGCTTCGCATGCGGCGTCGACGCCGGCGTCCGCGCCGTCCTTGACGCCGGTGTGTTCCCTCACCTGATCAGGCT CCTCTCTGCCGCTGATGAGAAGGTTGTGGATGCAGCTGCGCGCTCTTTACGAATGATTTATCAATCGAAACTCGCGCCGA AGTTTGATTTTTTTCATGAGGCAAACATGGAGTTTCTTCTTTCGCTATTTAAGAGTGAGAATGAGAATCTTGCCGGGCTA GGTGCGAGCATTATTATTCATTCCTGCGAGACAAGTGACGAACAAAATGTAGTATGTTCTGCTGGTGCTTTAGAGAAACT TATGGGCCTTCTTGATGGTTCTATAACCCAGAGAGATGCTAGTTTAGAGTCCCTAGCTACTATTCTTAAGAACAATCTAG GAGCCGTCTCGAAATTTGTTGAGCTTCAAAATGGAAGAGCTTTGAGTTCTGTAATTGAATTGACGAAGGACAGATGTCCG AGGACAAGGTTACTAGCTTGCTTGTGCTTGATTTGTGTAAAGAATTCTTCATCTTGCTATCTTCAAGATATAGGAATCAA GGCCAAACTGATTCATATTTTGCTTGAGCTCCTTGATGATTCTGGTCAAGTTGGAGACGAGGCTTCCTTTGCTTTTTCGA GTTTACTTGCGGAAAAGGAAGATTTGCATAAGTTAGCATTTGAGGCAAATGCTATCGACAAGCTCTACAATCACTTACAA AATTGTGCTTTGCATCCCAAACGTCTTGAAGGGATATTTCTAGCATTAGCTAATCTTTGCTCAAAATTGGAATGCTGCAG GTCTAAGTTTCTTTCATTGCAGGTGTTGAATCTTTTAATTGATGCCTTAACCCATGATGAGGCCAATGTACGTGCCGCAG CTTGCATTTGCTTAAGAAGTGTGTCTCGCTCAGTCAAGAATTTAAGTGCAGGTTGTTTTATGAATGAAAAGATTGTAATT CCATTGTTTCGGCTTCTCTCTGATCATTCTACTTCTGTCCAGGTTGCGGCCCTTGGTGCTATTAGCAACATAGTGGTTGA CTTTAAACCCCATAAGTCAACATTCATACAATGCGGAGGCATTAAAGAGCTTGTCCAATTCACAAAGTCTATGGATTCGT CTTTGAGATTGAATGCTGTATGGGTCCTAAGGAACATGGTATTTCTTGCAGATAAGAGTTGTAAGGAAGGAATTTTTATG GAGTTGACAGTGTCTACATTAGCTAGCCTCATCTGTGATCCTGAGCCTTCTGTTCAAGAGCAAGCTCTAGCCCTTGTTCG CAATTTTATTGATGGAAGTATTGATTGTATTGAATATGCTTTTGCTGGAGATGGTATCATACTGGATGCTGTTGGAAGGC AATTGCAAAAATCCTCAAAAGTTGAAATTGGGATACAGGGAATGTACACACTAAGCAATATTGCAAGTGGAAATGAGTTT CATAAAGAAGCCATAATGCAGCTACTCTTTCCACAAGCAGAAGATGGGTCAAACTCTTTCTTGAGCCAGTTTTTGCAGAG TAATGACAATGATTTACGCGCATCTGCTCTCTGGGTCATAGTAAATCTGACATTTCCTTCAAGTCGCGGTGCATTTAGTC GGATTGTAAAACTGCGTAATCTTGGCATTGTTTCTCAAGTCAAGAGGATGGTCAATGATTCTTGCATGGATGTGAAGCTT CGGGCAAGACTTGCACTTGGGCACATTATTACTTTTGGTGATAGTTAA
Protein sequence (LotjaGi1g1v0011000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPATRPASDLILDRLLSISSSDCQVKLKAIREIKNQIIGNRTKKLSYIKLGAVPAVAAALTGADASSDCGSSLIVQSAAA LGSFACGVDAGVRAVLDAGVFPHLIRLLSAADEKVVDAAARSLRMIYQSKLAPKFDFFHEANMEFLLSLFKSENENLAGL GASIIIHSCETSDEQNVVCSAGALEKLMGLLDGSITQRDASLESLATILKNNLGAVSKFVELQNGRALSSVIELTKDRCP RTRLLACLCLICVKNSSSCYLQDIGIKAKLIHILLELLDDSGQVGDEASFAFSSLLAEKEDLHKLAFEANAIDKLYNHLQ NCALHPKRLEGIFLALANLCSKLECCRSKFLSLQVLNLLIDALTHDEANVRAAACICLRSVSRSVKNLSAGCFMNEKIVI PLFRLLSDHSTSVQVAALGAISNIVVDFKPHKSTFIQCGGIKELVQFTKSMDSSLRLNAVWVLRNMVFLADKSCKEGIFM ELTVSTLASLICDPEPSVQEQALALVRNFIDGSIDCIEYAFAGDGIILDAVGRQLQKSSKVEIGIQGMYTLSNIASGNEF HKEAIMQLLFPQAEDGSNSFLSQFLQSNDNDLRASALWVIVNLTFPSSRGAFSRIVKLRNLGIVSQVKRMVNDSCMDVKL RARLALGHIITFGDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 9 | 281 | 273 | 2.4E-25 | ||
PANTHER | 14 | 649 | 636 | 8.7E-234 | ||
SUPERFAMILY | 17 | 652 | 636 | 4.01E-40 | ||
SMART | 87 | 128 | 42 | 8.9 | ||
Pfam | 92 | 124 | 33 | 1.2E-4 | ||
ProSiteProfiles | 99 | 126 | 28 | 8.522 | ||
SMART | 171 | 210 | 40 | 340.0 | ||
Gene3D | 282 | 651 | 370 | 1.4E-54 | ||
SMART | 299 | 341 | 43 | 190.0 | ||
SMART | 386 | 426 | 41 | 8.8 | ||
SMART | 428 | 468 | 41 | 2.8E-4 | ||
Pfam | 431 | 467 | 37 | 5.4E-7 | ||
SMART | 471 | 511 | 41 | 180.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0011000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…