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LotjaGi1g1v0036600.2

Overview

Field Value
Gene ID LotjaGi1g1v0036600
Transcript ID LotjaGi1g1v0036600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0036600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:5103640..5107969) extracted from Lotus japonicus Gifu genome v1.2.

CAAACCCAAATCCCGCATAGTCCCACTCCCTCACCTTCATTGAGAGCCGCTAGCTCTGCAATTTTGCATACGGTATCAAG AAATCCACCCTTCTCAATTCTCAAAACCAACACAACACATTCGTTTCTTCTCTGAAAAAGACTCCACCTTTGGCGTCAAA CTCTTCAGGGTATGTACTTTTGCAATTCATAATCTCTCATAGTTAGGGTTCTAATTTTGCATGCAAAGTTTTTATACTGT AAATTTCAATGTTCAATTGAAGAATGCATCAAATTAACCCTTTAATATCTCACAAAATTGATAAAAAGAAACCATTTTTG TGGTGTTTGGTCACTATTTTGGTATGGATCACTTTTATCATTGTTTTTTATGCTTTTCCTGATTACACATCAGTTAGGCC ATGAAAAGAAGAAGGGACTCAATTGGGTCTGCTAGGGTAGCAGTGGAAGTTGATGATGAGCCAGAAAGTCAGCAACTTGG GGCTTCTCTTGCTGATCTTCCAACCCATATCACTACTGATATTCTGCTAAGACTTCCTGTGAAGTCTATTCTCATTTGTA AATGTGTTTGTAGAAGTTTGAAAGCTATGATCTCAGACCCCCATTTTGCAAAACTTCACTTTCAGCATTCCCAATCTGGT TTCATGATTCGTGCCAAGGATAAGAAATTGTCGGGAATCATGTACCTTCTTGAGCGCGAGACTGAAAAGTTTGAAAATGA TGATGATGATAGCCAATTCTGTTGCTGTGAGAACTCTATTATGAGACCTGAATGCAACTGTCACTTTATACTTGAGCATA AAGTCAAGCTTCCTTTTCGTGGTGCCAAACTAGTTTGGGGTAATAGAGATGAAAGCAAGAAAAGAGGCAGACCAACGGGC AGAGAAAATCATTATTTTAACTTTGAGGGAGAAGATGGTAAGTTTGCTGTGGTGAACTCTTGCAATGGCTTGATTTGCTT GTGTGATAGGGAAAGAGACTATTTTGTTGTTTGCAACCCAATTACAGGTGAGTTCATACGACTTCCACAAACTAGTAGAA TTGGTAAAACTAATAAATTCAGTATCCAAGAGATATACGCTGGTTTTGGTTTCCAACCCAAAAATAATGAATATAAGGTG GTAAGAATATTGAGAGGGTTGCAGTTTTATCATGGTATTATGGCTGCTGAAGTGCACACCCTAGGGACATCAACATGGAG GAATGTTGAAGTTAATTCTATGTATTTTTACAACCTCCGATTTCCTACTTGTGTTAGTGGGGCACTTCATTGGATCGGTT CCTATCACGGGACTCTATCAATATTGTGTTTCGACTTTGAAAGCGAGAGGTTCCGGTCCTTCCCTACTCCTCCCTGTTTG TATCAAAGTTGTACTGAGAGCATAACCATGGGAGAATTGAGGGGCTCTCTTTACATATGTGATTCCTTTTCTAAGGGTAC TCCCTTTGTAATGTGGATTATGAAGGAATATGGTTTCAAAGAATCGTGGACTAAGATTTTCAGCTTTGATACTATGAGCA GTTATCGCTGGCCTTTTGGTGGATTATATTGGCCAGTAAAACACTTTAAGAATGGTTCTGCTATATTGATGTATCATTCC TACAATTTCTTTATCTACTATGAACCTGGAAAGGATGGATTCAAAATTTTTAAAGTTCGTGGGACTCAATCAAGATTTGA TGTTATTCCTCATATTCCTAGTTTTATCTCGCTGAAAGATGTTGTGAAAGGAGACAATATTGAGGTGCTGAATGTGCACT CAAGGTAAGTAAGGATGTAGGTTCTATTACTTTGTTTACTACTTGGCTAGCTATAAAACCACTACTACTATGATAATATG CATCATAATATAGGTATTCATGGGAACATGTGTGGGTTTCCTGTGTTGGTGCTTTTGTTTTAACTTCCTTTTTTGGCATT CTCTAGGAAACTTGTTGCTTCGTCAATCAATTGCTTACAACTAAACTATGTGTGGAAATTTTTATACATGCTATGATTAT TTTTTTTCTATCTACAATGTTTGTAAATCTTTGCTTTTGCAGTTTCTGAAAAAAAAAATCCTTGTAGATACAAACTTGTT TTGCTAATTATGTCTTTTGAACTTTCTATACACCTTCCATATTGATGGCGTAATAGAATATGTACAGTTTTTGTAAATTC CAGCTCTTAGATGTAAGTATTTATTATTGTGGAAGAGTAAAAGCAGGTGTTGAAGTCCATTCTGACTTGCTGCTACCTCT AGATTTAGCCACTTTACTCTAGCAATATTCACTAATATTATTAATATTTTATATAGGTATGAGGAGTTCAAATTTATGGA AGAAAATGCAGATCTTTTCTTGGCTAAAGTGAACGACAAAGTGGGAATATTATACACCATATCAACTGATGATGAAGAAT AGGGTGAAGAACACAACCTTGTACAAGTAATTTCCATGTAACTAGGTTATGTTATATCGCAAATTTTGGTTTGACTAGTT GTAATTTTTGGAAGATATATCATCTTGGACTTCAAATTGAAAGATATTTCGTTAATCTATGGTTTCCTGGGGAATGATTA TTGCTCAGCCTTTCATTCTATTTCCTGATGTCTTTCACATGCTTTACTACATCTGTCATATCTGCATTGATTCCCTAATC GGTCCTGTCCTTGAAAAGGGTTTACACTACAGGAAAATTTGTGTTTTGAGGCGGACAATCTGCAGCGGTTGTACTGAAAC CGCCGCATAATGGCACTTAGAGGCGGTACCAGAGGTGGTTTGGGCAGGCGCTGCAGAATACGTACAAATAGAGGCGGCTA TTTATCCTTCTGTGGCGGTTCATACGTTACAAATAGAGGCGGCTATTTATCCTCCTGGCTCTGTTTTCCGTTACTCTTAG TTGTTTGTTTCTCTTGTTGTTTTGTTCATTTTCATTTTCATTGCTGTTTAAAAGCCTTCCCTCCGTGCTTTGGCTTTTTC ATTATACTTTGTCTTGTTCATGTTTCTTTTCAACTTCTGTAAATTATTTATCTAAATCAATCTTAGGTCACGTAACGTGC TGGTTAGTCTATTAATTTCGTGTCATTTTGCTGTTTTATAACCTGTGATTTTGTGATTTCAGTTTCTTCATCTACATTCT TATCTCTCTCTCTCTCTTTCTCTGTCACCCTGTTGTGCTCTCCACTCTTAGCTCTCTCCACTCAGATTTCGTTCTCATCT TATGATTTCAGTTTCTTCTCCTCTCAAATTTGGATCGAAGGTAAGCATCTCGTTCTCATCTTTTGATTTTAGTTTCCAGT AATTGTCATTACGGTACTTAGCAGGGGAATGGCTTATGATTTCACATTGTAGCAGATTTCTTCCTTTTTGGGTTTTAAAG CTGATTTTCATTAAGCAAAGGTCTAAGATAAAAATACTATATTATGTTTAAATCACACTCATCTTCTCAGTCCCACTGAT TTGTTATGTTTTGTTCCCCATGGAATGAAAATGCAGGTTCTACATCAATTAGCTCGTTGCCATTATGCGACAAACAGATT CTTTTATCCAACAATATCCTATAAGTTTTGATAGGAAATTTTTTAACTACCTGTATCTTCATAAGTTGCATCAATGAATT CAATTTAGTTATTTGCATTTTGGATTCTGTTGGTGGTAGTGGAGTTTGTTTACTTGGAGTTTCTTTGAAGGGATTATATG CTGTTTGTTTGGGTTTTTTTGTTTGCTGTGTTGCTAAAGGGAGCTCATCAGCTGTGTACGATTACTTTTTCTCATACTAT AAATTGAGTTTCTTTCTATGTTTATTTTTTACTCTGATTCTTATTGCAGTAATAGTGGGTCAGGATGGTTTAAAGAAGAG GTCTTTCCATTTGCCTTTAACCCTTGATAAATTGAAATATGCTGACATCAAAAGCAAGGTAAGGTTGTAATTATTTAACA CTTCTCCTGCATTTCATTTTCTGCGGCTTCTTATGACTAGATTTTGTCATTATCAACATGTAATTATTTTTGGCGTCTAA ATGAAGGATGAATGAGTAGCCCAAGGTTGTAGTTTCATTTACTTAAGCTGGAAAATGTAATGGTGTCATTTGGCTTGAAT GATTTCAAGAACTTCTACTTTTCAATTAGGATGCCTTTACATTGAATTTCTGGTGAGCTAGCTCAGATTTAGTGTTGAGA TTTTCGGTGGATATCATTTTTACTTGTTCATTCAATGAGCAAGTTTTTTTATCCTGATTTTACAAAGATGGAGCTTGAGC ACATTTTCATTTTATGTAGGTTGTCATCCTTGCAATACAATAGTTATTAGACAAGATTGCATTTTACGTTCATTGTTCAA TATAAATCAA 

CDS sequence (LotjaGi1g1v0036600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAAGAAGAAGGGACTCAATTGGGTCTGCTAGGGTAGCAGTGGAAGTTGATGATGAGCCAGAAAGTCAGCAACTTGG GGCTTCTCTTGCTGATCTTCCAACCCATATCACTACTGATATTCTGCTAAGACTTCCTGTGAAGTCTATTCTCATTTGTA AATGTGTTTGTAGAAGTTTGAAAGCTATGATCTCAGACCCCCATTTTGCAAAACTTCACTTTCAGCATTCCCAATCTGGT TTCATGATTCGTGCCAAGGATAAGAAATTGTCGGGAATCATGTACCTTCTTGAGCGCGAGACTGAAAAGTTTGAAAATGA TGATGATGATAGCCAATTCTGTTGCTGTGAGAACTCTATTATGAGACCTGAATGCAACTGTCACTTTATACTTGAGCATA AAGTCAAGCTTCCTTTTCGTGGTGCCAAACTAGTTTGGGGTAATAGAGATGAAAGCAAGAAAAGAGGCAGACCAACGGGC AGAGAAAATCATTATTTTAACTTTGAGGGAGAAGATGGTAAGTTTGCTGTGGTGAACTCTTGCAATGGCTTGATTTGCTT GTGTGATAGGGAAAGAGACTATTTTGTTGTTTGCAACCCAATTACAGGTGAGTTCATACGACTTCCACAAACTAGTAGAA TTGGTAAAACTAATAAATTCAGTATCCAAGAGATATACGCTGGTTTTGGTTTCCAACCCAAAAATAATGAATATAAGGTG GTAAGAATATTGAGAGGGTTGCAGTTTTATCATGGTATTATGGCTGCTGAAGTGCACACCCTAGGGACATCAACATGGAG GAATGTTGAAGTTAATTCTATGTATTTTTACAACCTCCGATTTCCTACTTGTGTTAGTGGGGCACTTCATTGGATCGGTT CCTATCACGGGACTCTATCAATATTGTGTTTCGACTTTGAAAGCGAGAGGTTCCGGTCCTTCCCTACTCCTCCCTGTTTG TATCAAAGTTGTACTGAGAGCATAACCATGGGAGAATTGAGGGGCTCTCTTTACATATGTGATTCCTTTTCTAAGGGTAC TCCCTTTGTAATGTGGATTATGAAGGAATATGGTTTCAAAGAATCGTGGACTAAGATTTTCAGCTTTGATACTATGAGCA GTTATCGCTGGCCTTTTGGTGGATTATATTGGCCAGTAAAACACTTTAAGAATGGTTCTGCTATATTGATGTATCATTCC TACAATTTCTTTATCTACTATGAACCTGGAAAGGATGGATTCAAAATTTTTAAAGTTCGTGGGACTCAATCAAGATTTGA TGTTATTCCTCATATTCCTAGTTTTATCTCGCTGAAAGATGTTGTGAAAGGAGACAATATTGAGGTGCTGAATGTGCACT CAAGGTATGAGGAGTTCAAATTTATGGAAGAAAATGCAGATCTTTTCTTGGCTAAAGTGAACGACAAAGTGGGAATATTA TACACCATATCAACTGATGATGAAGAATAG 

Protein sequence (LotjaGi1g1v0036600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKRRRDSIGSARVAVEVDDEPESQQLGASLADLPTHITTDILLRLPVKSILICKCVCRSLKAMISDPHFAKLHFQHSQSG FMIRAKDKKLSGIMYLLERETEKFENDDDDSQFCCCENSIMRPECNCHFILEHKVKLPFRGAKLVWGNRDESKKRGRPTG RENHYFNFEGEDGKFAVVNSCNGLICLCDRERDYFVVCNPITGEFIRLPQTSRIGKTNKFSIQEIYAGFGFQPKNNEYKV VRILRGLQFYHGIMAAEVHTLGTSTWRNVEVNSMYFYNLRFPTCVSGALHWIGSYHGTLSILCFDFESERFRSFPTPPCL YQSCTESITMGELRGSLYICDSFSKGTPFVMWIMKEYGFKESWTKIFSFDTMSSYRWPFGGLYWPVKHFKNGSAILMYHS YNFFIYYEPGKDGFKIFKVRGTQSRFDVIPHIPSFISLKDVVKGDNIEVLNVHSRYEEFKFMEENADLFLAKVNDKVGIL YTISTDDEE 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 17 128 112 9.0E-8
ProSiteProfiles 27 72 46 9.948
Pfam 29 69 41 6.0E-7
SUPERFAMILY 30 79 50 1.83E-13
PANTHER 32 373 342 1.2E-38
PANTHER 32 373 342 1.2E-38
SMART 33 72 40 2.7E-6
TIGRFAM 179 400 222 2.1E-33
Pfam 284 377 94 1.7E-7

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0036600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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