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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0054500 |
Transcript ID | LotjaGi1g1v0054500.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Kinase family protein; TAIR: AT5G10270.1 cyclin-dependent kinase C;1; Swiss-Prot: sp|Q9LFT8|CDKC1_ARATH Cyclin-dependent kinase C-1; TrEMBL-Plants: tr|I1JIS7|I1JIS7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0054500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7665535..7669552) extracted from Lotus japonicus Gifu genome v1.2.
CATCAAGCAGCCATGGCTGGTCAGCTCAACGTGATTGAATCCGCCACTTGGGGATCCAGAAGTGTCGATTGCTTCGAGAA ATTGGAGCAAATTGGTGAAGGCACATATGGGTTTGTCTCAATTTCTCTTCTTCTTTACCTTTCTCCTATCAAAATTTAAT CTTTTTTAATGGGGTGGTTCTTTTTTCGCATCATGGAAGATGAAATTTTTTCAAGTCAATGGTAGTTATGCTTGTTTTTG TTGGGCTAGGTTAAAGTTCAATTTTTTTTTTTTTCATTTGGATATTTGTTCCCAATTTTATGACCCTTTTTTTTGGTTTA AACATCCGGTACTCGTTCACCCTTTGGATGCCGTTAGATTTGGGATTTAATCACAGTTAAGGCTTTGCATCCCTCCCCCA AAGTGTATTGTGTGGGGATCGAACCTGAGAGTTCTTCCCAGACACTCGGTCTGCGTTGCCAACTGAGCTAAAACTAATAC ATTTTATGTTTCTTGAACTCTTTTTCCCATTTAAAGAAAAAAATAGTATTTTTTGCACTTATTGGTGATGTTGTCTGAAG TGGACTGATCTATAACTTCATGTGTTTATGTTTGCAGTCAGGTCTTCATGGCGAAGGAGATCGAAACCGGTGAAATCGTT GCTCTGAAGAGGATACGGATGGACAATGAGAGAGAAGGGGTATGTTAATTCTTTGAGTCTTGAATGTTTAATTTTTTTAC TTAGATTATGGGTGCATAACATATTTTCATTGTACATGTTATTCAGTTGGCCTAAATCAGAATTTGCAGTCAAAGTCTGT TAGTTCTGTATTGTGAATTTCTCCTAGGAACTGTATTGTAAATTTTTTCATTGCAGTTTCCTATAACTGCTATACGAGAA ATCAAAATTTTAAAGAAACTGCACCATGAGAATGTGATCGAGCTGAAAGAAATTGTGACTTCGCCAGGTATACTTTAAAG ATATAGATGTGCTTTGTTTTCAAAATGGTTTAGGATTTATAAATAACATTGTGTTTCTTCTTTCAGGCCCTGAGAGAGAT GGACAAGGAAGGCCAGGCAAGTCATCCGTTCTCACATTATTAGCTAATTACTGAATAATAGTACTCATCTATTTTCATAT TATTAGCCAATTACTGAATAATAGTACATAACATGCTTTATAGCTCTAGCTGTGTGAATATATCCATCAACTCCCATTGG ATTCTCTTTGTTCCATACTAACCTTTTTCACTTGTTTCTCATTGTTGTTTTTGGGATTGCAGATGGTAACAAATATAAAG GTGGTATTTACATGGTCTTTGAATACATGGACCATGATTTAACAGGTCTTGCTGACCGACCTGAAATGAGATTTACAGTT CCTCAAATTAAGGTACGAGTGTTTATACTAATAATTGATTTTTCATATATTAATATTTGTTTATTTTGATGTTGTCTGAG TTGCGTTTCCTTTCTTAAGTGTTATATGAGACAGCTTTTGACGGGGCTTCACTACTGTCATGTAAATCAAGTACTTCATC GTGATATCAAAGGTCTGTGTATTAACAGGGTTATGGTTTTAGATCAGAATGTTGGAAATATTACTACTTTTTGATGTATT TTATTCTGCTGCAGGATCAAATCTTCTTATAGACAATGAAGGAAATTTGAAGCTTGCAGATTTTGGACTGGCACGATCAT TTTCTAGTGAGCAAAATGCAAATCTTACAAATCGTGTCATTACGTTATGGTACAGGTAATTGGTGTCAAATTTTTCTTGA GGAGATTGAATAGGGCAGAGGGAGGGGCTATTTGATTGGCAAGTGCATGTATTGAGTTTGTTTTATTTATGTAGACCGCC TGAGTTGCTTCTGGGGACAACGAAGTATGGACCAGCTGTAGATATGTGGTCTGTTGGGTGCATTTTTGCTGAGCTTCTTC ATGGGAAGCCCATTTTTCCTGGGAAAGATGAGGTTAGTGATATTTTATATATGATAGTTAAGAGAAATGGGTGCCGAAGT GGTGAGTGATTGATGTGGTGTAGTATTTAGGGTAGATTTGATTTTATCCTGTATATTGCCAGTAGGAAAAAAAAGATTCT TTATATTACATTCTGATTCTCCGGATTCAGTCTCTAAATACATCCTGCCATATTCCTTTCTCTGCATATTATAAGCATAT CTCAGTGCAACTCAATTGTTATGATCATTGATGTCTATGTATTTCGAATCTATGGATTCTACTGAAACATAGTACGCTAA TAACAATGTTTGGCTAGACTGTTGCATCTAATTTGCTCAATACTTTTCAGAAATCTCATTATTACATCTTTGTCATATCT TGCTTGTATTATATATGGCCTATGCTTTATATCCTAATGGTAATATTTTTTGGTACAGCTTAAATGTAATACATCTTTTG TTTGTAATTATTGTAGCCAGAACAATTAAACAAAATATTTGAGCTGTGTGGAGCACCAGATGAGGTCAATTGGCCTGGGG TTTCTAAGACACCTTGGTATAATCAATTTAAGCCATCAAGGCCAATGAAAAGACGTTTGAGGGATGTTTTCAGGCAGTAA GTATCAAGGCTTGAGCATCATCACTAAGCATATATGTACTTTTATCCACCTAGGAAATAAGGATACAGTCCATATTCTGT GCTTGTAAATTTATCTAAATAGCTTGTTTCCCTGTGACTTTATAGTTTTGATCGTCATGCTCTAGAATTGTTGGACAAGA TGCTGACACTTGATCCGGCTCAGGTATCATTTCTTCACTTGTGGGTCTGATTTATTAATTGTTAAATGATTTTGAATTGC TATTTTAAGTGCTTCAATTCCCTGTTATTCCTGTTTTATTTTATATCACTCGACCTGTTTTATATGACGAGGTTAGCCAT AGCTACTATTGTTATTTTGTTATTATTATGTATCTCATATACTGACAGATCTCATACTATGCGTAAGATAAAAATGGTGT ACATCTGGTTTCCTTTGTGAGAAACTTTCGTAATGTAATAAAAAAAATTGAGACAAGAAAAAAAAAAGAATTGATGGCAT AATGCTAGTTTAGACGACTTTGAGAAGTTTTTTTTTTTTTTGCTATGAATATGTCATTTGTAACATAGTTGGGTTTGTGT TATGATTTGCTTATTCACCTCTAGGCTATATGCTTTATGAAAATTAATTTTGTTCATGATTTGTTTCTTAATATTTGTTT GTAAATTTGATTTTTGTAGAGAATTACGGCGAAAGATGCACTTGATGCTGAGTATTTCTGGACAGATCCATTACCATGCG ATCCCAAGAGGTAAGACCTAGTTTCTATTTTCAAAATATTAATTTTCCTTGAAATTGTTAGATCGTGATAGGAATAAATA CTTGTTCCATTCACTCCTTCGGCTCCTTCCCTTTTAACTTTATTTTGTTTTATGCAACTAATCATTTACTGGTCAACATT CTTCAACTTGCTACTTCTCTTTTGTGTGGCTTAGTTTACCCAAGTATGAGTCATCACATGAATTTCAAACAAAGAAAAAG CGCCAGCAACAAAGGCAAAATGAAGAAATTGCAAAGCGTCAGAAAATGCAACAACCACAGCCGCACACTCGTCTTCCCCC AATTCAGCAGCCTGGGCAACATGCCCAAATGCGGTCAGGATCTAAGCAGCCAATTCATGGCTCTCAACCTCAAGTTGTTG CAGGACCTTCTCATCATTATGGGAGGGCTCGAGGTCCACCTGGTGGGCCAGGAAGATATCCTCCCAGTGGAAACCCCAGC GGAGGATACAATCACCCAAATCGTGGAGGTCAAGGAGGAGGTGGTTACGGCAGCGGGCCTTATCCTCCTCAAGGGCGAGG GGCACCTTATGGGTCCAGTGGTATGCCTGGTGGTGGTCCTCGTGGTGGAGGTGGCGGTTATGGGGCTGGAGCTCCAAACT ATCCTCAACAAGGCGGTCCATATGGGGGCTCAGCAGCTGGTCGTGGCTCAAACATGATGGGTGGAAATCGCAATCAACAG TATGGTTGGCAGCAATAA
CDS sequence (LotjaGi1g1v0054500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAGGAAGGCCAGGCAAATGGTAACAAATATAAAGGTGGTATTTACATGGTCTTTGAATACATGGACCATGATTT AACAGGTCTTGCTGACCGACCTGAAATGAGATTTACAGTTCCTCAAATTAAGTGTTATATGAGACAGCTTTTGACGGGGC TTCACTACTGTCATGTAAATCAAGTACTTCATCGTGATATCAAAGGATCAAATCTTCTTATAGACAATGAAGGAAATTTG AAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAGTGAGCAAAATGCAAATCTTACAAATCGTGTCATTACGTTATG GTACAGACCGCCTGAGTTGCTTCTGGGGACAACGAAGTATGGACCAGCTGTAGATATGTGGTCTGTTGGGTGCATTTTTG CTGAGCTTCTTCATGGGAAGCCCATTTTTCCTGGGAAAGATGAGCCAGAACAATTAAACAAAATATTTGAGCTGTGTGGA GCACCAGATGAGGTCAATTGGCCTGGGGTTTCTAAGACACCTTGGTATAATCAATTTAAGCCATCAAGGCCAATGAAAAG ACGTTTGAGGGATGTTTTCAGGCATTTTGATCGTCATGCTCTAGAATTGTTGGACAAGATGCTGACACTTGATCCGGCTC AGAGAATTACGGCGAAAGATGCACTTGATGCTGAGTATTTCTGGACAGATCCATTACCATGCGATCCCAAGAGTTTACCC AAGTATGAGTCATCACATGAATTTCAAACAAAGAAAAAGCGCCAGCAACAAAGGCAAAATGAAGAAATTGCAAAGCGTCA GAAAATGCAACAACCACAGCCGCACACTCGTCTTCCCCCAATTCAGCAGCCTGGGCAACATGCCCAAATGCGGTCAGGAT CTAAGCAGCCAATTCATGGCTCTCAACCTCAAGTTGTTGCAGGACCTTCTCATCATTATGGGAGGGCTCGAGGTCCACCT GGTGGGCCAGGAAGATATCCTCCCAGTGGAAACCCCAGCGGAGGATACAATCACCCAAATCGTGGAGGTCAAGGAGGAGG TGGTTACGGCAGCGGGCCTTATCCTCCTCAAGGGCGAGGGGCACCTTATGGGTCCAGTGGTATGCCTGGTGGTGGTCCTC GTGGTGGAGGTGGCGGTTATGGGGCTGGAGCTCCAAACTATCCTCAACAAGGCGGTCCATATGGGGGCTCAGCAGCTGGT CGTGGCTCAAACATGATGGGTGGAAATCGCAATCAACAGTATGGTTGGCAGCAATAA
Protein sequence (LotjaGi1g1v0054500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKEGQANGNKYKGGIYMVFEYMDHDLTGLADRPEMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNL KLADFGLARSFSSEQNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCG APDEVNWPGVSKTPWYNQFKPSRPMKRRLRDVFRHFDRHALELLDKMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLP KYESSHEFQTKKKRQQQRQNEEIAKRQKMQQPQPHTRLPPIQQPGQHAQMRSGSKQPIHGSQPQVVAGPSHHYGRARGPP GGPGRYPPSGNPSGGYNHPNRGGQGGGGYGSGPYPPQGRGAPYGSSGMPGGGPRGGGGGYGAGAPNYPQQGGPYGGSAAG RGSNMMGGNRNQQYGWQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 227 | 227 | 33.955 | ||
SMART | 3 | 227 | 225 | 1.1E-44 | ||
PANTHER | 9 | 411 | 403 | 1.1E-219 | – | |
PANTHER | 9 | 411 | 403 | 1.1E-219 | – | |
SUPERFAMILY | 10 | 235 | 226 | 3.29E-74 | ||
CDD | 11 | 227 | 217 | 7.06749E-156 | – | |
Pfam | 15 | 227 | 213 | 4.3E-53 | ||
Gene3D | 15 | 257 | 243 | 2.2E-81 | – | |
Gene3D | 23 | 249 | 227 | 2.2E-81 | – | |
ProSitePatterns | 62 | 74 | 13 | - | ||
MobiDBLite | 238 | 418 | 181 | - | – | |
MobiDBLite | 240 | 265 | 26 | - | – | |
MobiDBLite | 266 | 303 | 38 | - | – | |
MobiDBLite | 404 | 418 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. |
Expression pattern of LotjaGi1g1v0054500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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