Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0079800 |
Transcript ID | LotjaGi1g1v0079800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Exostosin-2; TAIR: AT3G55830.1 Nucleotide-diphospho-sugar transferases superfamily protein; Swiss-Prot: sp|Q9LY62|GT644_ARATH Glycosyltransferase family 64 protein C4; TrEMBL-Plants: tr|A0A0L9UW14|A0A0L9UW14_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0079800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11530013..11533414) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAGGGAGCAGCTGCTGGCTCAACCGTCGCGCGGAGCAGAGGTTCCGCCTGCTCGCGATCTCCACCGTTAAATCAGC TAAGATCAAGCTTCTACTCTTCTGTTGCGTCGCGTTGACGCTTCTCGCTTTCTTCACCAGCGCTTCCTCTTTCATCTTAT GGAACAATCACACCCCTCCTCTGCCTCATTCCTCTGATTCCAGGTTCGTTTTTCTCTGTGGTTTCAAAATTTGATCCCTT AACTGTTTGTAGTTTCTATTTTAGAATTGGAACATGACAAAAAAAATGGTATGGTTTGATTGACCTTAGCATAGGTTTAT AGTAGTTTGGATGGAATGATTTAAGATTGGTTTAGTTTTGATAAGATGTTCTGTTTTGGAAAGTACTAGAAAATCTCAGT TCCTTTGAGGGAATTTCCATATATGTGTTAGCAAATAAGATTCTGTTTGATTTGTGTTCTGTTGTCCTTTATGTTTGTTC TTTCATATATAGGAAAAGAATATAGAAAGTGATTTGGGTTGTATATTTGTAAAGTTCATTTTATAGAAAAAAAAAGAGAT AAAAACAATGTTTAGTCTTGGAAACATTTTGTTCAGGTGAAAGTTAACTGATCAGTGTTATTATTTGGAGTTTTGGATTG ACTGTTTTTCAAGCTAAAGTGGCTCAATAAGCTCTTGGTGATGGGATTTTGGATATTTTTGGTATTCTCTGATGATGTCA CTGTTATTCATACTGGCATACTAGGGACTTTACCTGGAATTTAGATCCTCTTTATTGCTTTTATGCAGTGATTATGAGAT CACATCATGTGCTAGAATTTGGGTTGGTAACTGTGAATCTGATGGACTATTTAATGTTATGAGATTCATCACTTATTGTT GAGCTTTCTAAGTCAACCAACCATCTGGATTTGGGAGAAAGTTGAGTAAATGAAACCTCCTGTCAAAACATTATTTGGGA TTTGGTGATTTTGATAGTTGAATATTGTGTAGTGGGACTTGAGTGGGCATTGGCCTTTTAATTTAGATTGAAGATGGCAC CTTCCAACTTTTAGATCTTGTTCAGAGTTCATATCACATATTTCAGTTGTAGCATTTGTGGGTTAACTAGACTCTGCACT ATGCTTACTTGGTCTTATTTTCCTTGGGGCTAGATAATTAATCTAAATAAGAATGGAACCGCTCTTTCTTTTTCATATTT TTTCCCGCTCAAATTTGTAGAATATAGTCTATTGTTTGTCTTTTAAATTCGAACTCTAAATTTTATTTTCTGAAGGAGTC CTGAGGGAAACATCAGAAACTCATTGTCGTTTATATTTGTTCACAGGAAAGGATATTCTATCGTAATGAACACGTGGAAG AGATATGATCTCCTAAAGCAGTCAATCAAGCACTATTCATCATGCCCTCGTCTTGAATCGGTACATATTGTGTGGAGTGA GCCCGATCCTCCTTCAGATGCTCTTTTAAAATTTCTGCACCATGTTGTGAAGTACAAGTCTAAAGATGGGCGACAAGTGA AATTGAGGTTTGATATCAACAAGGAAGACAGTTTGAACAATAGATTTAAAGAAATTAAGGATTTGGAGACAGATGCAGTC TTTTCCATTGATGATGATGTCATATTTCCTTGCTCTTCAGTGGAATTTGCATTTGATGTTTGGCAAAGTGCACCTGATAC AATGGTGGGGTTCGTGCCTCGGGTCCATTGGGAGGATCCATTGGTATGTTTTTTTTACCGGATCACTGTCCATTATCCCT GCTAATTTTTGTTGCACAATATTTCTTTTATTCCTCTTCTTTTGGAGCTCAAATGTGAGAGAAAGTGAATGACTAATTGA GCATGCTGCAAGTCAACCCCTTTTTTATTTTAATTTTCTTCCTTTATTTCCTGTTTCTTTGTTTACACTCTAGTATTTAA CCTCTAATTGCCTTGATTCCTAGTACTATTTACCTTTCAAGACTTACTTTGCAAATTGAAAGTGTACTTTTGTGAAACAT TTGATGTATTGTATAGATCCATTTCAAATTTGAACTTGATCCCAGACTGGCATCAAAACCATAAAAATAGCACATTTTGT ATATCACACATGTATTTTAGTTTCTAAAGTTGACCCTCATCATAAACTGGGGACCTGTTATATCATTCTTGGTGAGGTTC TAATTTGAAGAAAATGAATCTGAACTGCTTTTACAGAAAAATGAATTTCATCTGTCTTATATCCAACCTTCAACAAGCTG TTAGACTCTTTTGATGCATCTTTGAACTTAATGTGAACTTGAATGATTAGTGTAATGTTTGATCCATAATTCTCAGTCTT TTAAGTTTATTAATTTTTTATGAGTCTAGTGCAATGACAGGAAACATATAAAATATTTACAAGGGTAATAAGTTATTCAA TGTGCTTGCAGAAAGAAGATGGCAACAAGTTTAGATATGGTGGATGGTGGTCTGTGTGGTGGACGGGAACATATAGCATG GTGCTCTCCAAGGCAGCATTCTTTCACAAAAAGTATTTCATTCTCTACACAAATGAGATGCCATCATCAATTAAAGAATA TACAACAAAGAACAGGTTTTTATCTGACTAATTTACCGCCACTACCTTTCTTTTTATGAGGCTTCAATCTTTCAAACTTT GATTCAACTTTTTTGTTGTTTACTCAATAATTCAATTAATTTATCAGGAATTGTGAAGATATCGCAATGTCTTTCCTTGT TGCAAATGCAACTGGTGCCCCGCCCATATGGGTTAAAGGTAATTTAACAATTCCACTTGTCATATAACAATTGCATAGGA GTTGCATGAATTTTTCTTTTTTCTTTTCTGCTTGTTTAGCTGAGAAGTTCCTTAACTTCACTAGCTCAAAGTGTAAGACG CACTTCCATTTTGGGATTCATCACTTTACTGACATTTGTAAGATTGATTTGTGGTTGCAAAGAATGATACATGTATTTGT TTAGTACGCCAAAAGCAACATGAGAGCAAACATATTTTTAGTATATACAAAAAGGCATGCCATTAACAAAGAAGTTGCCA CACTCTATATTTTCAGTGAAATTTGTGGAATCTTAAGTTGCTGATTTTGAAGTTCCATGCTAATGCTTTGATTTTATGTT GTCCTTTCATGGTAATAGAAATTGAAAATTGGTCTCGTTAATTGTATACAACCATGTTGATATGTGCGACCCCTGCAAAG ACATGTATATGTGAACTAAATGGATTTTGTTTCTGTTACAGGTAAAATATTTGAGATTGGATCAACTGGAATCAGTAGTT TGGGAGGTCACAGTGACAAAAGAACAGAGTGCGTCAACAGATTTGTTGACGTGTTTGGGCGGATGCCCTTAGAGTATACT TCAGTTAAGGCCGTCGACAGTCGAAATATCTGGTTTTGGTGA
CDS sequence (LotjaGi1g1v0079800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGGGAGCAGCTGCTGGCTCAACCGTCGCGCGGAGCAGAGGTTCCGCCTGCTCGCGATCTCCACCGTTAAATCAGC TAAGATCAAGCTTCTACTCTTCTGTTGCGTCGCGTTGACGCTTCTCGCTTTCTTCACCAGCGCTTCCTCTTTCATCTTAT GGAACAATCACACCCCTCCTCTGAGTCCTGAGGGAAACATCAGAAACTCATTGTCGTTTATATTTGTTCACAGGAAAGGA TATTCTATCGTAATGAACACGTGGAAGAGATATGATCTCCTAAAGCAGTCAATCAAGCACTATTCATCATGCCCTCGTCT TGAATCGGTACATATTGTGTGGAGTGAGCCCGATCCTCCTTCAGATGCTCTTTTAAAATTTCTGCACCATGTTGTGAAGT ACAAGTCTAAAGATGGGCGACAAGTGAAATTGAGGTTTGATATCAACAAGGAAGACAGTTTGAACAATAGATTTAAAGAA ATTAAGGATTTGGAGACAGATGCAGTCTTTTCCATTGATGATGATGTCATATTTCCTTGCTCTTCAGTGGAATTTGCATT TGATGTTTGGCAAAGTGCACCTGATACAATGGTGGGGTTCGTGCCTCGGGTCCATTGGGAGGATCCATTGAAAGAAGATG GCAACAAGTTTAGATATGGTGGATGGTGGTCTGTGTGGTGGACGGGAACATATAGCATGGTGCTCTCCAAGGCAGCATTC TTTCACAAAAAGTATTTCATTCTCTACACAAATGAGATGCCATCATCAATTAAAGAATATACAACAAAGAACAGGAATTG TGAAGATATCGCAATGTCTTTCCTTGTTGCAAATGCAACTGGTGCCCCGCCCATATGGGTTAAAGGTAAAATATTTGAGA TTGGATCAACTGGAATCAGTAGTTTGGGAGGTCACAGTGACAAAAGAACAGAGTGCGTCAACAGATTTGTTGACGTGTTT GGGCGGATGCCCTTAGAGTATACTTCAGTTAAGGCCGTCGACAGTCGAAATATCTGGTTTTGGTGA
Protein sequence (LotjaGi1g1v0079800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGSSCWLNRRAEQRFRLLAISTVKSAKIKLLLFCCVALTLLAFFTSASSFILWNNHTPPLSPEGNIRNSLSFIFVHRKG YSIVMNTWKRYDLLKQSIKHYSSCPRLESVHIVWSEPDPPSDALLKFLHHVVKYKSKDGRQVKLRFDINKEDSLNNRFKE IKDLETDAVFSIDDDVIFPCSSVEFAFDVWQSAPDTMVGFVPRVHWEDPLKEDGNKFRYGGWWSVWWTGTYSMVLSKAAF FHKKYFILYTNEMPSSIKEYTTKNRNCEDIAMSFLVANATGAPPIWVKGKIFEIGSTGISSLGGHSDKRTECVNRFVDVF GRMPLEYTSVKAVDSRNIWFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 30 | 30 | - | – | |
Phobius | 1 | 50 | 50 | - | – | |
PANTHER | 19 | 338 | 320 | 9.0E-118 | – | |
PANTHER | 19 | 338 | 320 | 9.0E-118 | ||
TMHMM | 31 | 53 | 23 | - | – | |
Phobius | 31 | 45 | 15 | - | – | |
Phobius | 46 | 50 | 5 | - | – | |
Phobius | 51 | 341 | 291 | - | – | |
Gene3D | 76 | 337 | 262 | 5.8E-92 | ||
SUPERFAMILY | 79 | 331 | 253 | 2.11E-20 | ||
Pfam | 81 | 332 | 252 | 1.7E-80 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Protein glycosylation | A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. | ||
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Molecular function | Transferase activity, transferring glycosyl groups | Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi1g1v0079800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…