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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0079800 |
| Transcript ID | LotjaGi1g1v0079800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Exostosin-2; TAIR: AT3G55830.1 Nucleotide-diphospho-sugar transferases superfamily protein; Swiss-Prot: sp|Q9LY62|GT644_ARATH Glycosyltransferase family 64 protein C4; TrEMBL-Plants: tr|A0A0L9UW14|A0A0L9UW14_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0079800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11530013..11533414) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAGGGAGCAGCTGCTGGCTCAACCGTCGCGCGGAGCAGAGGTTCCGCCTGCTCGCGATCTCCACCGTTAAATCAGC TAAGATCAAGCTTCTACTCTTCTGTTGCGTCGCGTTGACGCTTCTCGCTTTCTTCACCAGCGCTTCCTCTTTCATCTTAT GGAACAATCACACCCCTCCTCTGCCTCATTCCTCTGATTCCAGGTTCGTTTTTCTCTGTGGTTTCAAAATTTGATCCCTT AACTGTTTGTAGTTTCTATTTTAGAATTGGAACATGACAAAAAAAATGGTATGGTTTGATTGACCTTAGCATAGGTTTAT AGTAGTTTGGATGGAATGATTTAAGATTGGTTTAGTTTTGATAAGATGTTCTGTTTTGGAAAGTACTAGAAAATCTCAGT TCCTTTGAGGGAATTTCCATATATGTGTTAGCAAATAAGATTCTGTTTGATTTGTGTTCTGTTGTCCTTTATGTTTGTTC TTTCATATATAGGAAAAGAATATAGAAAGTGATTTGGGTTGTATATTTGTAAAGTTCATTTTATAGAAAAAAAAAGAGAT AAAAACAATGTTTAGTCTTGGAAACATTTTGTTCAGGTGAAAGTTAACTGATCAGTGTTATTATTTGGAGTTTTGGATTG ACTGTTTTTCAAGCTAAAGTGGCTCAATAAGCTCTTGGTGATGGGATTTTGGATATTTTTGGTATTCTCTGATGATGTCA CTGTTATTCATACTGGCATACTAGGGACTTTACCTGGAATTTAGATCCTCTTTATTGCTTTTATGCAGTGATTATGAGAT CACATCATGTGCTAGAATTTGGGTTGGTAACTGTGAATCTGATGGACTATTTAATGTTATGAGATTCATCACTTATTGTT GAGCTTTCTAAGTCAACCAACCATCTGGATTTGGGAGAAAGTTGAGTAAATGAAACCTCCTGTCAAAACATTATTTGGGA TTTGGTGATTTTGATAGTTGAATATTGTGTAGTGGGACTTGAGTGGGCATTGGCCTTTTAATTTAGATTGAAGATGGCAC CTTCCAACTTTTAGATCTTGTTCAGAGTTCATATCACATATTTCAGTTGTAGCATTTGTGGGTTAACTAGACTCTGCACT ATGCTTACTTGGTCTTATTTTCCTTGGGGCTAGATAATTAATCTAAATAAGAATGGAACCGCTCTTTCTTTTTCATATTT TTTCCCGCTCAAATTTGTAGAATATAGTCTATTGTTTGTCTTTTAAATTCGAACTCTAAATTTTATTTTCTGAAGGAGTC CTGAGGGAAACATCAGAAACTCATTGTCGTTTATATTTGTTCACAGGAAAGGATATTCTATCGTAATGAACACGTGGAAG AGATATGATCTCCTAAAGCAGTCAATCAAGCACTATTCATCATGCCCTCGTCTTGAATCGGTACATATTGTGTGGAGTGA GCCCGATCCTCCTTCAGATGCTCTTTTAAAATTTCTGCACCATGTTGTGAAGTACAAGTCTAAAGATGGGCGACAAGTGA AATTGAGGTTTGATATCAACAAGGAAGACAGTTTGAACAATAGATTTAAAGAAATTAAGGATTTGGAGACAGATGCAGTC TTTTCCATTGATGATGATGTCATATTTCCTTGCTCTTCAGTGGAATTTGCATTTGATGTTTGGCAAAGTGCACCTGATAC AATGGTGGGGTTCGTGCCTCGGGTCCATTGGGAGGATCCATTGGTATGTTTTTTTTACCGGATCACTGTCCATTATCCCT GCTAATTTTTGTTGCACAATATTTCTTTTATTCCTCTTCTTTTGGAGCTCAAATGTGAGAGAAAGTGAATGACTAATTGA GCATGCTGCAAGTCAACCCCTTTTTTATTTTAATTTTCTTCCTTTATTTCCTGTTTCTTTGTTTACACTCTAGTATTTAA CCTCTAATTGCCTTGATTCCTAGTACTATTTACCTTTCAAGACTTACTTTGCAAATTGAAAGTGTACTTTTGTGAAACAT TTGATGTATTGTATAGATCCATTTCAAATTTGAACTTGATCCCAGACTGGCATCAAAACCATAAAAATAGCACATTTTGT ATATCACACATGTATTTTAGTTTCTAAAGTTGACCCTCATCATAAACTGGGGACCTGTTATATCATTCTTGGTGAGGTTC TAATTTGAAGAAAATGAATCTGAACTGCTTTTACAGAAAAATGAATTTCATCTGTCTTATATCCAACCTTCAACAAGCTG TTAGACTCTTTTGATGCATCTTTGAACTTAATGTGAACTTGAATGATTAGTGTAATGTTTGATCCATAATTCTCAGTCTT TTAAGTTTATTAATTTTTTATGAGTCTAGTGCAATGACAGGAAACATATAAAATATTTACAAGGGTAATAAGTTATTCAA TGTGCTTGCAGAAAGAAGATGGCAACAAGTTTAGATATGGTGGATGGTGGTCTGTGTGGTGGACGGGAACATATAGCATG GTGCTCTCCAAGGCAGCATTCTTTCACAAAAAGTATTTCATTCTCTACACAAATGAGATGCCATCATCAATTAAAGAATA TACAACAAAGAACAGGTTTTTATCTGACTAATTTACCGCCACTACCTTTCTTTTTATGAGGCTTCAATCTTTCAAACTTT GATTCAACTTTTTTGTTGTTTACTCAATAATTCAATTAATTTATCAGGAATTGTGAAGATATCGCAATGTCTTTCCTTGT TGCAAATGCAACTGGTGCCCCGCCCATATGGGTTAAAGGTAATTTAACAATTCCACTTGTCATATAACAATTGCATAGGA GTTGCATGAATTTTTCTTTTTTCTTTTCTGCTTGTTTAGCTGAGAAGTTCCTTAACTTCACTAGCTCAAAGTGTAAGACG CACTTCCATTTTGGGATTCATCACTTTACTGACATTTGTAAGATTGATTTGTGGTTGCAAAGAATGATACATGTATTTGT TTAGTACGCCAAAAGCAACATGAGAGCAAACATATTTTTAGTATATACAAAAAGGCATGCCATTAACAAAGAAGTTGCCA CACTCTATATTTTCAGTGAAATTTGTGGAATCTTAAGTTGCTGATTTTGAAGTTCCATGCTAATGCTTTGATTTTATGTT GTCCTTTCATGGTAATAGAAATTGAAAATTGGTCTCGTTAATTGTATACAACCATGTTGATATGTGCGACCCCTGCAAAG ACATGTATATGTGAACTAAATGGATTTTGTTTCTGTTACAGGTAAAATATTTGAGATTGGATCAACTGGAATCAGTAGTT TGGGAGGTCACAGTGACAAAAGAACAGAGTGCGTCAACAGATTTGTTGACGTGTTTGGGCGGATGCCCTTAGAGTATACT TCAGTTAAGGCCGTCGACAGTCGAAATATCTGGTTTTGGTGA
CDS sequence (LotjaGi1g1v0079800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGGGAGCAGCTGCTGGCTCAACCGTCGCGCGGAGCAGAGGTTCCGCCTGCTCGCGATCTCCACCGTTAAATCAGC TAAGATCAAGCTTCTACTCTTCTGTTGCGTCGCGTTGACGCTTCTCGCTTTCTTCACCAGCGCTTCCTCTTTCATCTTAT GGAACAATCACACCCCTCCTCTGAGTCCTGAGGGAAACATCAGAAACTCATTGTCGTTTATATTTGTTCACAGGAAAGGA TATTCTATCGTAATGAACACGTGGAAGAGATATGATCTCCTAAAGCAGTCAATCAAGCACTATTCATCATGCCCTCGTCT TGAATCGGTACATATTGTGTGGAGTGAGCCCGATCCTCCTTCAGATGCTCTTTTAAAATTTCTGCACCATGTTGTGAAGT ACAAGTCTAAAGATGGGCGACAAGTGAAATTGAGGTTTGATATCAACAAGGAAGACAGTTTGAACAATAGATTTAAAGAA ATTAAGGATTTGGAGACAGATGCAGTCTTTTCCATTGATGATGATGTCATATTTCCTTGCTCTTCAGTGGAATTTGCATT TGATGTTTGGCAAAGTGCACCTGATACAATGGTGGGGTTCGTGCCTCGGGTCCATTGGGAGGATCCATTGAAAGAAGATG GCAACAAGTTTAGATATGGTGGATGGTGGTCTGTGTGGTGGACGGGAACATATAGCATGGTGCTCTCCAAGGCAGCATTC TTTCACAAAAAGTATTTCATTCTCTACACAAATGAGATGCCATCATCAATTAAAGAATATACAACAAAGAACAGGAATTG TGAAGATATCGCAATGTCTTTCCTTGTTGCAAATGCAACTGGTGCCCCGCCCATATGGGTTAAAGGTAAAATATTTGAGA TTGGATCAACTGGAATCAGTAGTTTGGGAGGTCACAGTGACAAAAGAACAGAGTGCGTCAACAGATTTGTTGACGTGTTT GGGCGGATGCCCTTAGAGTATACTTCAGTTAAGGCCGTCGACAGTCGAAATATCTGGTTTTGGTGA
Protein sequence (LotjaGi1g1v0079800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGSSCWLNRRAEQRFRLLAISTVKSAKIKLLLFCCVALTLLAFFTSASSFILWNNHTPPLSPEGNIRNSLSFIFVHRKG YSIVMNTWKRYDLLKQSIKHYSSCPRLESVHIVWSEPDPPSDALLKFLHHVVKYKSKDGRQVKLRFDINKEDSLNNRFKE IKDLETDAVFSIDDDVIFPCSSVEFAFDVWQSAPDTMVGFVPRVHWEDPLKEDGNKFRYGGWWSVWWTGTYSMVLSKAAF FHKKYFILYTNEMPSSIKEYTTKNRNCEDIAMSFLVANATGAPPIWVKGKIFEIGSTGISSLGGHSDKRTECVNRFVDVF GRMPLEYTSVKAVDSRNIWFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 50 | 50 | - | – | |
| PANTHER | 19 | 338 | 320 | 9.0E-118 | – | |
| PANTHER | 19 | 338 | 320 | 9.0E-118 | ||
| TMHMM | 31 | 53 | 23 | - | – | |
| Phobius | 31 | 45 | 15 | - | – | |
| Phobius | 46 | 50 | 5 | - | – | |
| Phobius | 51 | 341 | 291 | - | – | |
| Gene3D | 76 | 337 | 262 | 5.8E-92 | ||
| SUPERFAMILY | 79 | 331 | 253 | 2.11E-20 | ||
| Pfam | 81 | 332 | 252 | 1.7E-80 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein glycosylation | A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transferase activity, transferring glycosyl groups | Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi1g1v0079800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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