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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0084000 |
| Transcript ID | LotjaGi1g1v0084000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rop guanine nucleotide exchange factor, putative; TAIR: AT5G05940.1 ROP guanine nucleotide exchange factor 5; Swiss-Prot: sp|F4K295|ROGF5_ARATH Rop guanine nucleotide exchange factor 5; TrEMBL-Plants: tr|A0A0B2QH98|A0A0B2QH98_GLYSO Rop guanine nucleotide exchange factor 1; Found in the gene: LotjaGi1g1v0084000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12059866..12063207) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAAGTTTGAGCAACAAGGGTGAAAATATGCAGAAGAAGAGAGATGGGTATCGTTCACCTCGTTCTGCTGCTAAGGG AGCTAAGGTGGTTAACAAGTCCTTCACTGGTTCCAGTGGTGGGTCGTGCTCCTCTGTTTCAACTGAAGAACCTAAAGCGG CTAAAGGGTCTTCTCCTTCTCCTGCTCCTTCTCCTCTTGGTTGGCCTATTCGGAAGGCTGCGGTTTCCAAACGTGGGAAA TCAGATGAGAAAGAAAATGAACCTGTTTCTCACTTGGAAGATGCTAAAATTACCAGTGTCAGTTCAAAAATGTCTGGTAA GATTTTTGTTAATGGCTTCCCATTTTGCTCTGTTTAGCACTAGAGAATGGATGGTGAGTTGGGGACACAACAATGTTGGA AATATTTGAATGCTTATAGCATGTTTGGACCAATTTCTCTTTCTCAAGATTCAATTCTATCAGCTAGAAGCCACTCAAAT AAGCTTCTCAGAATTGATTTTGACTTCAGAATCAATTGTAGTAAGATTTTCAAATATGCTCTAGTAGGTTTTGAATTTTG GTGCTACTATTTTGTATTTTGAATATTGACCCCCTTTTAGTCAGTTTAGTTAATAATGTTTTTATTTGGCTGTTGTTTAA TTACTGGGAAAATTGTTGGATCAGGGGTTGGTATGATGAAGGAAAGGTTTGCAAAATTGCTGCTTGGTGAAGATATGTCA GGATCTGGAAAAGGAGTTTGCACTGCTTTGGCCATCTCAAATGCCATCACTAATCTGTGTGGTATGGTTTCTTTGTAACA GTGACATAGGCTCATGTTGTGTTTGAGAAAATGTTACACTTTCTGCATTGGCAAATGCTTAAACTTTTCTGTTCTGGATT GAATATTAACGTTGTTGTAATAATTGATTCAATTTGGATTATTAATGCAAACATGTAGCAACTGTATTTGGACAATTATG GAGACTAGAACCTCTCCCTTGTGAAAAGAAAGCGATGTGGCGGCGAGAGATGGAGTGGCTGGTTTGTGTTAGTGATCACA TTGTTGAGTTGATGCCTTCTTGGCAAACATTCCCAGATGGAAGTAAGCTAGAGGTATAATTGCATTGAGTTCTCATCTTT GACTTCATTTTTCTTTTAACCAATGGATTATCATTAGGCTCTTCCCTCTTTACACTGTTTCTAATCAACAGTGGTATTAG AATTGTGATGTTTCTATTAGTATGTTTGCATCTTAGAATCAATTCTGACACCAGAAGCTTCTTCTCAGAATTGATTTTAA CTTTAGAATCAATTGTAGAAAGATTTACAAACATACAATAACATGGTGTGTTCTGCAGGTAATGACTTGCAGGCCAAGGT CAGATCTTTTCATCAATCTGCCAGCTCTGCAGAAACTTGACAACATGCTTCTTGTAAGTATTGCATCTCATTCTTTCATG GTATACTAGTAACTGGTTGTTGGTAAGTAAATGATAAACAATTCTGATTCTGAGGCTTTCATGTACATTATCACAGGACA TTTTAGATAGTTACAAAGCTAAGGAGTTTTGGTATGTTGACCAAGGAATTGTATCCCAAGATGCAGATGGATCAGCTTCT TTTCGCAAAAGAATTCAGCGAGAAGAGGAGAAGTGGTGGCTCCCCGTGCCTCGGGTTCCCCCTGCCGGTCTCAGTGACAA CTCAAGAAAGCAGTTGAATCACACAAGAGAATGTGCAAGCCAAATACTGAAAGCAGCCATGAGTATCAATGGCAATGCTT TAGCTGAAATGGAAGTTCCTGAGTCATATCTGGAAGCCCTTCCTAAGGTCTGATTTCCAACATGAACAGAATTTGATATC TTTGTCTGATTAATACAACTAGGCAAAAAAGTAAATGTGATTGATCAAATTCACTACAAATTTAGTAAGGAAACACTCAT AGACTCTTAACTTTGCTTCATCATTAACTCAAGGAGCAAAAAGTATTTTATTAGAGCTAAGGTGGTTAAGACTCATAGAC TCTTAACTTTCCACAACTGATTCTTAAACCAAAAATAATTAGGGGGAGAAGCTTCCGTGTGTCAGAATTGATTTTGAGGA AATAGAAACTAGTCCAAACTCCAAACATGCTAAAAATCTCTCATAATCTCTTTTTCTAGTCCTGCAGAGTTTCCAACCAC ACACTTCATACAGACTTATATGACATTGTTTTCAAATTTATATTTGGGTATTTCACAAAGAGTTCATTCAAGATACATGA TACATTATCTGAACTTTCAGAATGGAAGAACTTGCTTGGGGGATTTTATTTACCGTTACATCACATCAGAGCAATTCTCT TCGGAATGCCTGCTTGATTGCTTAGACCTCTCCTCTGAGCATGTTGCACTAGAGATTGCTAACCGTGTTGAAGCTTCAAT TCATGTATGGCGTCGAAGAGGTCACTCTAGACCCCCACCGAATCCTAGCCGTTCAACTACAAAGTCATCTTGGGAAATTG TCAAGGACTTCATGGCTGATGGAGACAAGAGAGAGTTGCTGGCAGAAAGAGCTGAAAATATTCTACTTTCATTGAAGCAG CGATTCCCGGGATTAACTCAAACTACCTTGGATACCAGCAAAATCCAGTGCAACAAGGTTACATTTCCCTTCTCTTTCTT TTTAATTGCAATTTTTCTCTCTTTCTATCACATTCATTGTATATCACATCCTTTACTTCTCTCTTTTCTCTTTCTCACTC TGGATATCTGTCAAGTGTCTGCATTATACGAATGCCTACAAATAATTTTACTTGCATGATTGTAATCTTTCAATCACATT ATCTAATTGTAATCTTTCTTTCAAAAGCCTTTATATTGACACATTTCATTTCAAACATTCAGGATGTTGGAAAAGCCATC CTAGAGGGCTATTCAAGAGTTCTGGAGAGCATGGCATTTAACATTGTAGCTCGTATAGATGATTTGCTATATGTGGATGA CTTGACAAAACATTCAGATAGGTTTCCATTGGTGCCACCGACAGTTAATGTGGTTTCTCAGCAGAAGCTTTCGCGTTCAA TGGCAGTGTCTGTCTCAGGCACTCCGCACAAAGCATTATCACCTGTGCCTCTAATTAGTCCGGCAAGGGGAGATAGAGAG AGAACTCCTTTCCTCAACATCAACAATAACAACATCATCAAACCTCAACGTCGTGGCTTTGGCGTGCGAAGAGCGTTGTC AAATTATCTTGGAGGAGAGACCAAAGCAACAAAGATGTTTAGCAATGCAACTGAAGTTAATGGTACAAACCCAAATTGCA ATAAAACAGAACAGCCAGAATGTCAGAAGGAATCGCATGACATGAGGAGCAAGACAAAATAA
CDS sequence (LotjaGi1g1v0084000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCTAAAGCGGCTAAAGGGTCTTCTCCTTCTCCTGCTCCTTCTCCTCTTGGTTGGCCTATTCGGAAGGCTGCGGT TTCCAAACGTGGGAAATCAGATGAGAAAGAAAATGAACCTGTTTCTCACTTGGAAGATGCTAAAATTACCAGTGTCAGTT CAAAAATGTCTGGGGTTGGTATGATGAAGGAAAGGTTTGCAAAATTGCTGCTTGGTGAAGATATGTCAGGATCTGGAAAA GGAGTTTGCACTGCTTTGGCCATCTCAAATGCCATCACTAATCTGTGTGCAACTGTATTTGGACAATTATGGAGACTAGA ACCTCTCCCTTGTGAAAAGAAAGCGATGTGGCGGCGAGAGATGGAGTGGCTGGTTTGTGTTAGTGATCACATTGTTGAGT TGATGCCTTCTTGGCAAACATTCCCAGATGGAAGTAAGCTAGAGGTAATGACTTGCAGGCCAAGGTCAGATCTTTTCATC AATCTGCCAGCTCTGCAGAAACTTGACAACATGCTTCTTGACATTTTAGATAGTTACAAAGCTAAGGAGTTTTGGTATGT TGACCAAGGAATTGTATCCCAAGATGCAGATGGATCAGCTTCTTTTCGCAAAAGAATTCAGCGAGAAGAGGAGAAGTGGT GGCTCCCCGTGCCTCGGGTTCCCCCTGCCGGTCTCAGTGACAACTCAAGAAAGCAGTTGAATCACACAAGAGAATGTGCA AGCCAAATACTGAAAGCAGCCATGAGTATCAATGGCAATGCTTTAGCTGAAATGGAAGTTCCTGAGTCATATCTGGAAGC CCTTCCTAAGAATGGAAGAACTTGCTTGGGGGATTTTATTTACCGTTACATCACATCAGAGCAATTCTCTTCGGAATGCC TGCTTGATTGCTTAGACCTCTCCTCTGAGCATGTTGCACTAGAGATTGCTAACCGTGTTGAAGCTTCAATTCATGTATGG CGTCGAAGAGGTCACTCTAGACCCCCACCGAATCCTAGCCGTTCAACTACAAAGTCATCTTGGGAAATTGTCAAGGACTT CATGGCTGATGGAGACAAGAGAGAGTTGCTGGCAGAAAGAGCTGAAAATATTCTACTTTCATTGAAGCAGCGATTCCCGG GATTAACTCAAACTACCTTGGATACCAGCAAAATCCAGTGCAACAAGGATGTTGGAAAAGCCATCCTAGAGGGCTATTCA AGAGTTCTGGAGAGCATGGCATTTAACATTGTAGCTCGTATAGATGATTTGCTATATGTGGATGACTTGACAAAACATTC AGATAGGTTTCCATTGGTGCCACCGACAGTTAATGTGGTTTCTCAGCAGAAGCTTTCGCGTTCAATGGCAGTGTCTGTCT CAGGCACTCCGCACAAAGCATTATCACCTGTGCCTCTAATTAGTCCGGCAAGGGGAGATAGAGAGAGAACTCCTTTCCTC AACATCAACAATAACAACATCATCAAACCTCAACGTCGTGGCTTTGGCGTGCGAAGAGCGTTGTCAAATTATCTTGGAGG AGAGACCAAAGCAACAAAGATGTTTAGCAATGCAACTGAAGTTAATGGTACAAACCCAAATTGCAATAAAACAGAACAGC CAGAATGTCAGAAGGAATCGCATGACATGAGGAGCAAGACAAAATAA
Protein sequence (LotjaGi1g1v0084000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPKAAKGSSPSPAPSPLGWPIRKAAVSKRGKSDEKENEPVSHLEDAKITSVSSKMSGVGMMKERFAKLLLGEDMSGSGK GVCTALAISNAITNLCATVFGQLWRLEPLPCEKKAMWRREMEWLVCVSDHIVELMPSWQTFPDGSKLEVMTCRPRSDLFI NLPALQKLDNMLLDILDSYKAKEFWYVDQGIVSQDADGSASFRKRIQREEEKWWLPVPRVPPAGLSDNSRKQLNHTRECA SQILKAAMSINGNALAEMEVPESYLEALPKNGRTCLGDFIYRYITSEQFSSECLLDCLDLSSEHVALEIANRVEASIHVW RRRGHSRPPPNPSRSTTKSSWEIVKDFMADGDKRELLAERAENILLSLKQRFPGLTQTTLDTSKIQCNKDVGKAILEGYS RVLESMAFNIVARIDDLLYVDDLTKHSDRFPLVPPTVNVVSQQKLSRSMAVSVSGTPHKALSPVPLISPARGDRERTPFL NINNNNIIKPQRRGFGVRRALSNYLGGETKATKMFSNATEVNGTNPNCNKTEQPECQKESHDMRSKTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 44 | 44 | - | – | |
| PANTHER | 15 | 463 | 449 | 5.8E-259 | ||
| PANTHER | 15 | 463 | 449 | 5.8E-259 | – | |
| MobiDBLite | 27 | 44 | 18 | - | – | |
| ProSiteProfiles | 49 | 431 | 383 | 118.371 | ||
| Gene3D | 51 | 287 | 237 | 5.3E-108 | – | |
| Pfam | 59 | 425 | 367 | 1.3E-184 | ||
| Gene3D | 355 | 430 | 76 | 5.3E-18 | – | |
| MobiDBLite | 520 | 548 | 29 | - | – | |
| MobiDBLite | 534 | 548 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
Expression pattern of LotjaGi1g1v0084000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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