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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005512
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We have found 51 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.499s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0015369.1
n.a. PREDICTED: rho guanine nucleotide exchange factor 8-like [Cicer arietinum] gi|502147590|ref|XP_004506840.1| chr0 5978774 5980688 +
3 domain predictions
1 GO term
Lj0g3v0087529.1
n.a. PREDICTED: rho guanine nucleotide exchange factor 8-like [Cicer arietinum] gi|502147590|ref|XP_004506840.1| chr0 35606096 35606514 +
3 domain predictions
1 GO term
Lj0g3v0109989.1
n.a. PREDICTED: LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 1-like [Glycine max] gi|356553808|ref|XP_003545244.1| chr0 47681174 47682979 -
3 domain predictions
1 GO term
Lj0g3v0299249.1
n.a. Rop guanine nucleotide exchange factor [Medicago truncatula] gi|357492475|ref|XP_003616526.1| chr0 155516506 155518457 +
2 domain predictions
1 GO term
Lj0g3v0306579.1
n.a. PREDICTED: rop guanine nucleotide exchange factor 1-like [Glycine max] gi|356559061|ref|XP_003547820.1| chr0 159964135 159971230 -
3 domain predictions
1 GO term
Lj0g3v0349149.1
n.a. Rop guanine nucleotide exchange factor [Medicago truncatula] gi|357492475|ref|XP_003616526.1| chr0 183299141 183301590 +
3 domain predictions
1 GO term
Lj1g3v2659360.1
n.a. PREDICTED: rop guanine nucleotide exchange factor 2-like isoform 1 [Glycine max] gi|356568388|ref|XP_003552393.1| chr1 31064584 31067901 +
3 domain predictions
1 GO term
Lj1g3v2659360.2
n.a. PREDICTED: rop guanine nucleotide exchange factor 2-like isoform 2 [Glycine max] gi|356568390|ref|XP_003552394.1| chr1 31064584 31067901 +
3 domain predictions
1 GO term
Lj1g3v3442650.1
n.a. RopGEF7b [Medicago truncatula] gi|332688647|gb|AEE89676.1| chr1 39752994 39757122 -
3 domain predictions
1 GO term
Lj1g3v3891930.3
n.a. Rop guanine nucleotide exchange factor [Medicago truncatula] gi|357500637|ref|XP_003620607.1| chr1 44692081 44694810 +
3 domain predictions
1 GO term
Lj2g3v1550280.1
n.a. PREDICTED: rop guanine nucleotide exchange factor 1-like [Glycine max] gi|356496475|ref|XP_003517093.1| chr2 24654299 24660778 +
3 domain predictions
1 GO term
Lj2g3v1550280.2
n.a. PREDICTED: rop guanine nucleotide exchange factor 1-like [Glycine max] gi|356496475|ref|XP_003517093.1| chr2 24657775 24660778 +
3 domain predictions
1 GO term
Lj2g3v2673920.1
n.a. PREDICTED: rop guanine nucleotide exchange factor 1-like [Glycine max] gi|356539905|ref|XP_003538433.1| chr2 36028145 36032513 +
3 domain predictions
1 GO term
Lj3g3v0237250.1
n.a. PREDICTED: rho guanine nucleotide exchange factor 8-like [Glycine max] gi|356557277|ref|XP_003546944.1| chr3 1444862 1448602 +
3 domain predictions
1 GO term
Lj3g3v2330830.1
n.a. PREDICTED: LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 2-like [Glycine max] gi|356520430|ref|XP_003528865.1| chr3 29245162 29248948 +
3 domain predictions
1 GO term
Lj3g3v2330830.2
n.a. PREDICTED: rop guanine nucleotide exchange factor 2-like [Glycine max] gi|356504716|ref|XP_003521141.1| chr3 29246253 29248277 +
3 domain predictions
1 GO term
Lj3g3v3553920.1
n.a. PREDICTED: rop guanine nucleotide exchange factor 1-like isoform 1 [Glycine max] gi|356544030|ref|XP_003540459.1| chr3 43267316 43272359 -
3 domain predictions
1 GO term
Lj4g3v3017400.1
n.a. PREDICTED: rho guanine nucleotide exchange factor 8-like [Cicer arietinum] gi|502147590|ref|XP_004506840.1| chr4 40499065 40499860 -
3 domain predictions
1 GO term
Lj5g3v0615550.1
n.a. PREDICTED: rho guanine nucleotide exchange factor 8-like [Glycine max] gi|356523072|ref|XP_003530166.1| chr5 7769361 7772257 +
3 domain predictions
1 GO term
Lj5g3v0615550.2
n.a. PREDICTED: rho guanine nucleotide exchange factor 8-like [Glycine max] gi|356523072|ref|XP_003530166.1| chr5 7769386 7772257 +
3 domain predictions
1 GO term
LotjaGi1g1v0084000.1
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT5G05940.1 ROP guanine nucleotide exchange factor 5; Swiss-Prot: sp|F4K295|ROGF5_ARATH Rop guanine nucleotide exchange factor 5; TrEMBL-Plants: tr|A0A1J7GUE4|A0A1J7GUE4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0084000 LjG1.1_chr1 12059434 12063540 +
3 domain predictions
1 GO term
LotjaGi1g1v0084000.2
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT5G05940.1 ROP guanine nucleotide exchange factor 5; Swiss-Prot: sp|F4K295|ROGF5_ARATH Rop guanine nucleotide exchange factor 5; TrEMBL-Plants: tr|A0A0B2QH98|A0A0B2QH98_GLYSO Rop guanine nucleotide exchange factor 1; Found in the gene: LotjaGi1g1v0084000 LjG1.1_chr1 12059866 12063207 +
3 domain predictions
1 GO term
LotjaGi1g1v0084500_LC.1
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT5G05940.1 ROP guanine nucleotide exchange factor 5; Swiss-Prot: sp|F4K295|ROGF5_ARATH Rop guanine nucleotide exchange factor 5; TrEMBL-Plants: tr|A0A151R4W2|A0A151R4W2_CAJCA Rop guanine nucleotide exchange factor 1; Found in the gene: LotjaGi1g1v0084500_LC LjG1.1_chr1 12140190 12140510 +
3 domain predictions
1 GO term
LotjaGi1g1v0084700_LC.1
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT5G02010.1 RHO guanyl-nucleotide exchange factor 7; Swiss-Prot: sp|Q9LZN0|ROGF7_ARATH Rop guanine nucleotide exchange factor 7; TrEMBL-Plants: tr|A0A151U163|A0A151U163_CAJCA Rop guanine nucleotide exchange factor 1; Found in the gene: LotjaGi1g1v0084700_LC LjG1.1_chr1 12140887 12142315 +
3 domain predictions
1 GO term
LotjaGi1g1v0391700_LC.1
n.a. rop guanine nucleotide exchange factor-like protein; TAIR: AT1G79860.1 RHO guanyl-nucleotide exchange factor 12; Swiss-Prot: sp|Q9CA89|ROGFC_ARATH Rop guanine nucleotide exchange factor 12; TrEMBL-Plants: tr|I1KGN8|I1KGN8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0391700_LC LjG1.1_chr1 87602866 87606805 +
3 domain predictions
1 GO term
LotjaGi1g1v0476400.1
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT1G01700.1 RHO guanyl-nucleotide exchange factor 2; Swiss-Prot: sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2; TrEMBL-Plants: tr|A0A151TAZ6|A0A151TAZ6_CAJCA Rop guanine nucleotide exchange factor 2; Found in the gene: LotjaGi1g1v0476400 LjG1.1_chr1 98744364 98748609 +
3 domain predictions
1 GO term
LotjaGi1g1v0476400.2
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT1G01700.2 RHO guanyl-nucleotide exchange factor 2; Swiss-Prot: sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2; TrEMBL-Plants: tr|A0A0L9U3X8|A0A0L9U3X8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0476400 LjG1.1_chr1 98744583 98748609 +
3 domain predictions
1 GO term
LotjaGi1g1v0476400.3
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT1G01700.1 RHO guanyl-nucleotide exchange factor 2; Swiss-Prot: sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2; TrEMBL-Plants: tr|A0A151TAZ6|A0A151TAZ6_CAJCA Rop guanine nucleotide exchange factor 2; Found in the gene: LotjaGi1g1v0476400 LjG1.1_chr1 98744939 98748609 +
3 domain predictions
1 GO term
LotjaGi1g1v0476400.4
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT4G00460.2 RHO guanyl-nucleotide exchange factor 3; Swiss-Prot: sp|A4IJ27|ROGF3_ARATH Rop guanine nucleotide exchange factor 3; TrEMBL-Plants: tr|K7MU94|K7MU94_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0476400 LjG1.1_chr1 98745147 98748500 +
3 domain predictions
1 GO term
LotjaGi1g1v0476400.5
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT1G01700.1 RHO guanyl-nucleotide exchange factor 2; Swiss-Prot: sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2; TrEMBL-Plants: tr|A0A151TAZ6|A0A151TAZ6_CAJCA Rop guanine nucleotide exchange factor 2; Found in the gene: LotjaGi1g1v0476400 LjG1.1_chr1 98745312 98748311 +
3 domain predictions
1 GO term
LotjaGi1g1v0496100_LC.1
n.a. rop guanine nucleotide exchange factor-like protein; TAIR: AT1G79860.1 RHO guanyl-nucleotide exchange factor 12; Swiss-Prot: sp|Q9CA89|ROGFC_ARATH Rop guanine nucleotide exchange factor 12; TrEMBL-Plants: tr|I1KGN8|I1KGN8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0496100_LC LjG1.1_chr1 101105202 101108325 +
3 domain predictions
1 GO term
LotjaGi1g1v0496100_LC.2
n.a. rop guanine nucleotide exchange factor-like protein; TAIR: AT1G79860.1 RHO guanyl-nucleotide exchange factor 12; Swiss-Prot: sp|Q9CA89|ROGFC_ARATH Rop guanine nucleotide exchange factor 12; TrEMBL-Plants: tr|K7M904|K7M904_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0496100_LC LjG1.1_chr1 101106491 101108325 +
3 domain predictions
1 GO term
LotjaGi1g1v0577200.1
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT5G02010.1 RHO guanyl-nucleotide exchange factor 7; Swiss-Prot: sp|Q9LZN0|ROGF7_ARATH Rop guanine nucleotide exchange factor 7; TrEMBL-Plants: tr|A0A151QTL3|A0A151QTL3_CAJCA Rop guanine nucleotide exchange factor 1; Found in the gene: LotjaGi1g1v0577200 LjG1.1_chr1 111643594 111647164 +
3 domain predictions
1 GO term
LotjaGi2g1v0218300.1
n.a. Rop guanine nucleotide exchange factor; TAIR: AT3G24620.1 RHO guanyl-nucleotide exchange factor 8; Swiss-Prot: sp|Q9LV40|ROGF8_ARATH Rho guanine nucleotide exchange factor 8; TrEMBL-Plants: tr|I1KIP8|I1KIP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0218300 LjG1.1_chr2 67300619 67305777 -
3 domain predictions
1 GO term
LotjaGi2g1v0347200.1
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT1G31650.2 RHO guanyl-nucleotide exchange factor 14; Swiss-Prot: sp|Q56WM6|ROGFE_ARATH Rop guanine nucleotide exchange factor 14; TrEMBL-Plants: tr|K7K403|K7K403_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0347200 LjG1.1_chr2 82383184 82406573 +
3 domain predictions
1 GO term
LotjaGi2g1v0347200.2
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT1G31650.2 RHO guanyl-nucleotide exchange factor 14; Swiss-Prot: sp|Q56WM6|ROGFE_ARATH Rop guanine nucleotide exchange factor 14; TrEMBL-Plants: tr|K7K403|K7K403_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0347200 LjG1.1_chr2 82383275 82406573 +
3 domain predictions
1 GO term
LotjaGi2g1v0347200.3
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT1G31650.1 RHO guanyl-nucleotide exchange factor 14; Swiss-Prot: sp|Q56WM6|ROGFE_ARATH Rop guanine nucleotide exchange factor 14; TrEMBL-Plants: tr|K7K403|K7K403_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0347200 LjG1.1_chr2 82383275 82406573 +
3 domain predictions
1 GO term
LotjaGi2g1v0347200.4
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT1G31650.2 RHO guanyl-nucleotide exchange factor 14; Swiss-Prot: sp|Q56WM6|ROGFE_ARATH Rop guanine nucleotide exchange factor 14; TrEMBL-Plants: tr|K7K403|K7K403_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0347200 LjG1.1_chr2 82387092 82389748 +
3 domain predictions
1 GO term
LotjaGi3g1v0018200.1
n.a. rop guanine nucleotide exchange factor-like protein; TAIR: AT1G79860.1 RHO guanyl-nucleotide exchange factor 12; Swiss-Prot: sp|Q9CA89|ROGFC_ARATH Rop guanine nucleotide exchange factor 12; TrEMBL-Plants: tr|K7M904|K7M904_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0018200 LjG1.1_chr3 1894904 1898851 +
3 domain predictions
1 GO term
LotjaGi3g1v0222000.1
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT5G02010.1 RHO guanyl-nucleotide exchange factor 7; Swiss-Prot: sp|Q9LZN0|ROGF7_ARATH Rop guanine nucleotide exchange factor 7; TrEMBL-Plants: tr|A0A151SMC0|A0A151SMC0_CAJCA Rop guanine nucleotide exchange factor 1; Found in the gene: LotjaGi3g1v0222000 LjG1.1_chr3 33561844 33566320 +
3 domain predictions
1 GO term
LotjaGi3g1v0222000.2
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT5G02010.1 RHO guanyl-nucleotide exchange factor 7; Swiss-Prot: sp|Q9LZN0|ROGF7_ARATH Rop guanine nucleotide exchange factor 7; TrEMBL-Plants: tr|A0A151SMC0|A0A151SMC0_CAJCA Rop guanine nucleotide exchange factor 1; Found in the gene: LotjaGi3g1v0222000 LjG1.1_chr3 33561971 33566319 +
3 domain predictions
1 GO term
LotjaGi3g1v0222000.3
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT5G02010.1 RHO guanyl-nucleotide exchange factor 7; Swiss-Prot: sp|Q9LZN0|ROGF7_ARATH Rop guanine nucleotide exchange factor 7; TrEMBL-Plants: tr|A0A151SMC0|A0A151SMC0_CAJCA Rop guanine nucleotide exchange factor 1; Found in the gene: LotjaGi3g1v0222000 LjG1.1_chr3 33561971 33566319 +
3 domain predictions
1 GO term
LotjaGi3g1v0366900.1
n.a. rop guanine nucleotide exchange factor-like protein; TAIR: AT1G79860.1 RHO guanyl-nucleotide exchange factor 12; Swiss-Prot: sp|Q9CA89|ROGFC_ARATH Rop guanine nucleotide exchange factor 12; TrEMBL-Plants: tr|V7AQ39|V7AQ39_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0366900 LjG1.1_chr3 75308753 75314001 +
3 domain predictions
1 GO term
LotjaGi3g1v0366900.2
n.a. Rop guanine nucleotide exchange factor; TAIR: AT1G79860.1 RHO guanyl-nucleotide exchange factor 12; Swiss-Prot: sp|Q9CA89|ROGFC_ARATH Rop guanine nucleotide exchange factor 12; TrEMBL-Plants: tr|V7AQ39|V7AQ39_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0366900 LjG1.1_chr3 75309541 75311636 +
3 domain predictions
1 GO term
LotjaGi3g1v0383300.1
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT4G00460.2 RHO guanyl-nucleotide exchange factor 3; Swiss-Prot: sp|A4IJ27|ROGF3_ARATH Rop guanine nucleotide exchange factor 3; TrEMBL-Plants: tr|V7AS76|V7AS76_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0383300 LjG1.1_chr3 77737369 77742244 +
3 domain predictions
1 GO term
LotjaGi3g1v0383300.2
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT4G00460.2 RHO guanyl-nucleotide exchange factor 3; Swiss-Prot: sp|A4IJ27|ROGF3_ARATH Rop guanine nucleotide exchange factor 3; TrEMBL-Plants: tr|V7AS76|V7AS76_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0383300 LjG1.1_chr3 77738131 77741425 +
3 domain predictions
1 GO term
LotjaGi3g1v0383300.3
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT4G00460.2 RHO guanyl-nucleotide exchange factor 3; Swiss-Prot: sp|A4IJ27|ROGF3_ARATH Rop guanine nucleotide exchange factor 3; TrEMBL-Plants: tr|V7AS76|V7AS76_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0383300 LjG1.1_chr3 77738408 77741067 +
3 domain predictions
1 GO term
LotjaGi3g1v0533000.1
n.a. Rop guanine nucleotide exchange factor; TAIR: AT4G38430.1 rho guanyl-nucleotide exchange factor 1; Swiss-Prot: sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1; TrEMBL-Plants: tr|A0A0S3SE88|A0A0S3SE88_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0533000 LjG1.1_chr3 94977029 94981049 -
3 domain predictions
1 GO term
LotjaGi3g1v0533000.2
n.a. Rop guanine nucleotide exchange factor; TAIR: AT4G38430.1 rho guanyl-nucleotide exchange factor 1; Swiss-Prot: sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1; TrEMBL-Plants: tr|A0A0S3SE88|A0A0S3SE88_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0533000 LjG1.1_chr3 94977567 94980594 -
3 domain predictions
1 GO term
LotjaGi4g1v0142800.1
n.a. Rop guanine nucleotide exchange factor, putative; TAIR: AT1G31650.1 RHO guanyl-nucleotide exchange factor 14; Swiss-Prot: sp|Q56WM6|ROGFE_ARATH Rop guanine nucleotide exchange factor 14; TrEMBL-Plants: tr|K7MGA4|K7MGA4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0142800 LjG1.1_chr4 22417718 22424989 +
3 domain predictions
1 GO term