Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0103100 |
| Transcript ID | LotjaGi1g1v0103100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cbs domain protein; TAIR: AT5G10860.1 Cystathionine beta-synthase (CBS) family protein; Swiss-Prot: sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial; TrEMBL-Plants: tr|I3SU87|I3SU87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0103100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:15864386..15866461) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAAGGAGGAATGAGAGCAATCTTCTCACGTGGGAATGTCATTAAGAATGCTGTTCTGCAACAAGTTCGCATGGTGAA CCCCCTACTGAAGCCAGTTGCCTTTTCAAGATATGAGTCTGTTTCACCTGCTCGTATTGAGGAGCATGGTTTTGAGAGCA CCACAATTGCAGACATCTTGAAAGCAAAAGGTAAAGGCGCTGATGGCTCCTGGCTTTGGTGCACCACAGAGGATACTGTT TATGAAGCTGTTAAATCGGTAATGCATATTTGATTTTATTGCAATTGGTTTTGCAAAAAAGTTATAGGTACGTTTACATG GGATTAATGCATTTCACTTAATTGACATCCATTACAGATGACCCAGAACAATGTTGGAGCATTGGTTGTTGTGAAACCTG CTGAGGAGAAGTCAATTGCAGGAATTATAACAGAAAGAGGTACCTGCTAAGGATGCAAACTTTTATTTTGCGGAACTGTT ATATGTTGTCTAATGGAAATTTACTTATATTTTACAAAATGTTGACTTCTGTTGGTTCTTTTTTTCTTTTTCAAAAAGGA AAAAAAAAAACCTTCTGGGGAATAATGATGACTATATCATATATTGAAATGGATTTAGGACATGTAATTGGATCAAGAAC AGTGGAGATAAATGAATGGTATAATTGAGTTAATGATGCTGGGGAATAATTTGCATGAGTCCTTTAATCTAAAGGAATTT AAAAGAGACATTTCCTCTTAAAACTAAGCGGTGTGTATGAAAAGAGTTTTTGTGAGGAATTAAAATGTCAATGTGCTATA TCTTTAAAACGTGAAAATGCGTAGTAGTCAACTGAAATTTTTTCTGTTATAAAAAAAAAAGAAATATGGAGGGGGGAAAC TAATTTCTCTCTTTCATCCCTTGCTCACTCATAACCTTTCCTCCTAAGACTTGAAGTCCCTATAATTCTTTAAAGATTTA GACAGAAAGACCTTTCAATAACAAAAGGATAGATGATGTTCACTCAGTGGTGCTTTTGGCATTTATGAATATGCCTCTTG TGTTGAAAGACCTGTGTGTACTTTGATGAGACTGAATGATTTATATTGAAGAAGCAATTGTCTAACTAGCTAAGGGTCCA GCAAATGACACGGCATAATATTGTGGAGGATGATTGTATGAGTTTTATCAAAATATACTTGGATGCAATTAAATGGTAGT GCTCTATGCAGATTATTTTTGTCACTGGGTCATTTATGTTCTTCTTTTTATGACATCTTGTTACACAGATTACCTGAGGA AGATCATTGTGCAGGGAAGATCATCCAAGTCCACCAAGGTTGGAGATATTATGACTGAAGAGGTATGACCGTAGTACTTG TTTTATAGGGAAACCTCTTTTGCATGTCTGCATTTTGTGCTATATAAGTTAAGACAATTAAATGGTTCCCCTAGTTATAG CATGTTTGGGTCAGCTTTTTTTTTCCTTCTCAATCAATCTTGATTCACCGAAGCTACTCACAGAAGTTTCTCCTCAATCG TTTTTGCTTTAAAATCAATTATAGAAGAATTTTTAAACATGCACTTGTGGTGCCCCAGACCAATTGCCTGAGTATTATTT GTTTGTGTTGAATAATTTGAATGCAAAATTCAGCAGTCGTAGGTGCTGCTATTTGAGCAGGGTACTAGTACTTAGGGGTA ACACAAAAATCTCCAACACATTTGCACATTGTCAATTTCAACATTCATGATACTTTTCCTAAAATTTGGATGTGGTGGCT GCAGAACAAACTTATCACTGTCACCCCGGATACCAGAGTTCTACGAGCAATGCAACTGATGACTGGTATTTATTTATGAG CTTTTTGCATCATTAAGAGGGAAAGATTAAATGATATCAAATAACCTGGCATGAGCTTGTAACTCATGTCTTTCCCATAT TTTGGTTTTTCAGATAACAGAATCAGACACATTCCTGTCATTGATGGAAAGGGGATGTTAGGCATGGTGTCCATTGGGGA TGTGGTTCGTGCGGTCGTCAGTGAGCATCGTCAGGAGCTTGACCGCTTGAATGCTTTTATACAGGGCGGTTATTAG
CDS sequence (LotjaGi1g1v0103100.2
Protein sequence (LotjaGi1g1v0103100.2
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 205 | 205 | 1.8E-121 | – | |
| PANTHER | 1 | 205 | 205 | 1.8E-121 | – | |
| Gene3D | 39 | 203 | 165 | 1.1E-42 | – | |
| SUPERFAMILY | 52 | 201 | 150 | 1.39E-31 | – | |
| ProSiteProfiles | 67 | 126 | 60 | 10.322 | ||
| SMART | 70 | 120 | 51 | 0.018 | ||
| CDD | 74 | 184 | 111 | 1.28823E-50 | – | |
| Pfam | 74 | 119 | 46 | 4.8E-7 | ||
| Pfam | 131 | 187 | 57 | 3.1E-12 | ||
| ProSiteProfiles | 135 | 193 | 59 | 13.938 | ||
| SMART | 140 | 187 | 48 | 1.8E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .