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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0103100 |
| Transcript ID | LotjaGi1g1v0103100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cbs domain protein; TAIR: AT5G10860.1 Cystathionine beta-synthase (CBS) family protein; Swiss-Prot: sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial; TrEMBL-Plants: tr|I3SU87|I3SU87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0103100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:15864386..15866461) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAAGGAGGAATGAGAGCAATCTTCTCACGTGGGAATGTCATTAAGAATGCTGTTCTGCAACAAGTTCGCATGGTGAA CCCCCTACTGAAGCCAGTTGCCTTTTCAAGATATGAGTCTGTTTCACCTGCTCGTATTGAGGAGCATGGTTTTGAGAGCA CCACAATTGCAGACATCTTGAAAGCAAAAGGTAAAGGCGCTGATGGCTCCTGGCTTTGGTGCACCACAGAGGATACTGTT TATGAAGCTGTTAAATCGGTAATGCATATTTGATTTTATTGCAATTGGTTTTGCAAAAAAGTTATAGGTACGTTTACATG GGATTAATGCATTTCACTTAATTGACATCCATTACAGATGACCCAGAACAATGTTGGAGCATTGGTTGTTGTGAAACCTG CTGAGGAGAAGTCAATTGCAGGAATTATAACAGAAAGAGGTACCTGCTAAGGATGCAAACTTTTATTTTGCGGAACTGTT ATATGTTGTCTAATGGAAATTTACTTATATTTTACAAAATGTTGACTTCTGTTGGTTCTTTTTTTCTTTTTCAAAAAGGA AAAAAAAAAACCTTCTGGGGAATAATGATGACTATATCATATATTGAAATGGATTTAGGACATGTAATTGGATCAAGAAC AGTGGAGATAAATGAATGGTATAATTGAGTTAATGATGCTGGGGAATAATTTGCATGAGTCCTTTAATCTAAAGGAATTT AAAAGAGACATTTCCTCTTAAAACTAAGCGGTGTGTATGAAAAGAGTTTTTGTGAGGAATTAAAATGTCAATGTGCTATA TCTTTAAAACGTGAAAATGCGTAGTAGTCAACTGAAATTTTTTCTGTTATAAAAAAAAAAGAAATATGGAGGGGGGAAAC TAATTTCTCTCTTTCATCCCTTGCTCACTCATAACCTTTCCTCCTAAGACTTGAAGTCCCTATAATTCTTTAAAGATTTA GACAGAAAGACCTTTCAATAACAAAAGGATAGATGATGTTCACTCAGTGGTGCTTTTGGCATTTATGAATATGCCTCTTG TGTTGAAAGACCTGTGTGTACTTTGATGAGACTGAATGATTTATATTGAAGAAGCAATTGTCTAACTAGCTAAGGGTCCA GCAAATGACACGGCATAATATTGTGGAGGATGATTGTATGAGTTTTATCAAAATATACTTGGATGCAATTAAATGGTAGT GCTCTATGCAGATTATTTTTGTCACTGGGTCATTTATGTTCTTCTTTTTATGACATCTTGTTACACAGATTACCTGAGGA AGATCATTGTGCAGGGAAGATCATCCAAGTCCACCAAGGTTGGAGATATTATGACTGAAGAGGTATGACCGTAGTACTTG TTTTATAGGGAAACCTCTTTTGCATGTCTGCATTTTGTGCTATATAAGTTAAGACAATTAAATGGTTCCCCTAGTTATAG CATGTTTGGGTCAGCTTTTTTTTTCCTTCTCAATCAATCTTGATTCACCGAAGCTACTCACAGAAGTTTCTCCTCAATCG TTTTTGCTTTAAAATCAATTATAGAAGAATTTTTAAACATGCACTTGTGGTGCCCCAGACCAATTGCCTGAGTATTATTT GTTTGTGTTGAATAATTTGAATGCAAAATTCAGCAGTCGTAGGTGCTGCTATTTGAGCAGGGTACTAGTACTTAGGGGTA ACACAAAAATCTCCAACACATTTGCACATTGTCAATTTCAACATTCATGATACTTTTCCTAAAATTTGGATGTGGTGGCT GCAGAACAAACTTATCACTGTCACCCCGGATACCAGAGTTCTACGAGCAATGCAACTGATGACTGGTATTTATTTATGAG CTTTTTGCATCATTAAGAGGGAAAGATTAAATGATATCAAATAACCTGGCATGAGCTTGTAACTCATGTCTTTCCCATAT TTTGGTTTTTCAGATAACAGAATCAGACACATTCCTGTCATTGATGGAAAGGGGATGTTAGGCATGGTGTCCATTGGGGA TGTGGTTCGTGCGGTCGTCAGTGAGCATCGTCAGGAGCTTGACCGCTTGAATGCTTTTATACAGGGCGGTTATTAG
CDS sequence (LotjaGi1g1v0103100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGGAGGAATGAGAGCAATCTTCTCACGTGGGAATGTCATTAAGAATGCTGTTCTGCAACAAGTTCGCATGGTGAA CCCCCTACTGAAGCCAGTTGCCTTTTCAAGATATGAGTCTGTTTCACCTGCTCGTATTGAGGAGCATGGTTTTGAGAGCA CCACAATTGCAGACATCTTGAAAGCAAAAGGTAAAGGCGCTGATGGCTCCTGGCTTTGGTGCACCACAGAGGATACTGTT TATGAAGCTGTTAAATCGATGACCCAGAACAATGTTGGAGCATTGGTTGTTGTGAAACCTGCTGAGGAGAAGTCAATTGC AGGAATTATAACAGAAAGAGATTACCTGAGGAAGATCATTGTGCAGGGAAGATCATCCAAGTCCACCAAGGTTGGAGATA TTATGACTGAAGAGAACAAACTTATCACTGTCACCCCGGATACCAGAGTTCTACGAGCAATGCAACTGATGACTGATAAC AGAATCAGACACATTCCTGTCATTGATGGAAAGGGGATGTTAGGCATGGTGTCCATTGGGGATGTGGTTCGTGCGGTCGT CAGTGAGCATCGTCAGGAGCTTGACCGCTTGAATGCTTTTATACAGGGCGGTTATTAG
Protein sequence (LotjaGi1g1v0103100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQGGMRAIFSRGNVIKNAVLQQVRMVNPLLKPVAFSRYESVSPARIEEHGFESTTIADILKAKGKGADGSWLWCTTEDTV YEAVKSMTQNNVGALVVVKPAEEKSIAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVTPDTRVLRAMQLMTDN RIRHIPVIDGKGMLGMVSIGDVVRAVVSEHRQELDRLNAFIQGGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 205 | 205 | 1.8E-121 | – | |
| PANTHER | 1 | 205 | 205 | 1.8E-121 | – | |
| Gene3D | 39 | 203 | 165 | 1.1E-42 | – | |
| SUPERFAMILY | 52 | 201 | 150 | 1.39E-31 | – | |
| ProSiteProfiles | 67 | 126 | 60 | 10.322 | ||
| SMART | 70 | 120 | 51 | 0.018 | ||
| CDD | 74 | 184 | 111 | 1.28823E-50 | – | |
| Pfam | 74 | 119 | 46 | 4.8E-7 | ||
| Pfam | 131 | 187 | 57 | 3.1E-12 | ||
| ProSiteProfiles | 135 | 193 | 59 | 13.938 | ||
| SMART | 140 | 187 | 48 | 1.8E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0103100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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