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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SM00116
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 71 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 8.168s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0055669.1
n.a. PREDICTED: chloride channel protein CLC-b-like [Glycine max] gi|356571521|ref|XP_003553925.1| chr0 17999399 18004092 +
2 domain predictions
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Lj0g3v0059619.1
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max] gi|356556126|ref|XP_003546378.1| chr0 19753087 19759550 +
2 domain predictions
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Lj0g3v0113969.1
n.a. PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Glycine max] gi|356498190|ref|XP_003517936.1| chr0 49846411 49846982 -
2 domain predictions
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Lj0g3v0197239.1
n.a. Meiotically up-regulated gene 70 protein [Medicago truncatula] gi|357520151|ref|XP_003630364.1| chr0 96182437 96184088 -
2 domain predictions
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Lj0g3v0228969.1
n.a. PREDICTED: chloride channel protein CLC-f-like isoform X1 [Cicer arietinum] gi|502127375|ref|XP_004499681.1| chr0 118455244 118459820 +
2 domain predictions
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Lj0g3v0239459.1
n.a. Inosine-5'-monophosphate dehydrogenase [Medicago truncatula] gi|357482805|ref|XP_003611689.1| chr0 124234040 124237184 +
2 domain predictions
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Lj0g3v0291859.1
n.a. AKIN gamma [Medicago truncatula] gi|32364482|gb|AAO61674.1| chr0 151413193 151413523 +
2 domain predictions
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Lj0g3v0317569.1
n.a. PREDICTED: chloride channel protein CLC-d-like [Glycine max] gi|356497470|ref|XP_003517583.1| chr0 165906816 165915354 +
2 domain predictions
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Lj0g3v0317569.2
n.a. PREDICTED: chloride channel protein CLC-d-like [Glycine max] gi|356497470|ref|XP_003517583.1| chr0 165906816 165915354 +
2 domain predictions
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Lj1g3v1077730.1
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like isoform X2 [Cicer arietinum] gi|502113314|ref|XP_004494610.1| chr1 13218354 13225730 +
2 domain predictions
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Lj1g3v1363200.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein [Medicago truncatula] gi|357464823|ref|XP_003602693.1| chr1 16366827 16373285 -
2 domain predictions
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Lj1g3v1363200.2
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein [Medicago truncatula] gi|357464823|ref|XP_003602693.1| chr1 16367446 16373285 -
2 domain predictions
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Lj1g3v1500470.1
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cicer arietinum] gi|502133303|ref|XP_004501712.1| chr1 17892236 17907543 +
2 domain predictions
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Lj1g3v1500470.2
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Glycine max] gi|356508821|ref|XP_003523152.1| chr1 17892661 17907543 +
2 domain predictions
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Lj2g3v1892030.1
n.a. PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like isoform X2 [Cicer arietinum] gi|502160793|ref|XP_004511900.1| chr2 28150722 28156392 +
2 domain predictions
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Lj2g3v3413340.2
n.a. PREDICTED: chloride channel protein CLC-e-like [Glycine max] gi|356554044|ref|XP_003545359.1| chr2 43166943 43172662 +
2 domain predictions
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Lj4g3v0620370.1
n.a. PREDICTED: CBS domain-containing protein CBSX2, chloroplastic-like [Cicer arietinum] gi|502143182|ref|XP_004505249.1| chr4 9601806 9608184 +
2 domain predictions
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Lj4g3v0620370.2
n.a. PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Glycine max] gi|356499765|ref|XP_003518707.1| chr4 9602048 9608184 +
2 domain predictions
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Lj4g3v1388280.1
n.a. PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cicer arietinum] gi|502176183|ref|XP_004515816.1| chr4 21288739 21292455 -
2 domain predictions
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Lj4g3v1893220.1
n.a. Cl-channel clc-7 [Populus trichocarpa] gi|224120342|ref|XP_002331024.1| chr4 26877774 26883645 -
2 domain predictions
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Lj4g3v2367350.1
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Cicer arietinum] gi|502151115|ref|XP_004508285.1| chr4 32579276 32584880 +
2 domain predictions
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Lj4g3v2367350.2
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Cicer arietinum] gi|502151115|ref|XP_004508285.1| chr4 32579276 32586241 +
2 domain predictions
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Lj4g3v2367350.3
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Cicer arietinum] gi|502151115|ref|XP_004508285.1| chr4 32579906 32586241 +
2 domain predictions
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Lj4g3v2845100.1
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB3-like [Cicer arietinum] gi|502139757|ref|XP_004503889.1| chr4 38007849 38011649 +
2 domain predictions
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Lj4g3v2916510.1
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Glycine max] gi|356511510|ref|XP_003524468.1| chr4 38794869 38798213 +
2 domain predictions
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Lj5g3v2266290.1
n.a. SNF4b [Medicago truncatula] gi|32364484|gb|AAO61675.1| chr5 33130740 33135360 -
2 domain predictions
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Lj6g3v1422220.1
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max] gi|356556126|ref|XP_003546378.1| chr6 16908036 16914225 -
2 domain predictions
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Lj6g3v2006990.1
n.a. Chloride channel protein CLC-c [Medicago truncatula] gi|357445225|ref|XP_003592890.1| chr6 23656940 23661597 +
2 domain predictions
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Lj6g3v2245600.1
n.a. PREDICTED: chloride channel protein CLC-e-like [Glycine max] gi|356554044|ref|XP_003545359.1| chr6 26114024 26116689 -
2 domain predictions
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LotjaGi1g1v0000500.1
n.a. Chloride channel protein; TAIR: AT4G35440.1 chloride channel E; Swiss-Prot: sp|Q8GX93|CLCE_ARATH Chloride channel protein CLC-e; TrEMBL-Plants: tr|A0A151R5P9|A0A151R5P9_CAJCA Chloride channel protein; Found in the gene: LotjaGi1g1v0000500 LjG1.1_chr1 313902 320231 -
2 domain predictions
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LotjaGi1g1v0103100.1
n.a. Cbs domain protein; TAIR: AT5G10860.1 Cystathionine beta-synthase (CBS) family protein; Swiss-Prot: sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial; TrEMBL-Plants: tr|I3SU87|I3SU87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0103100 LjG1.1_chr1 15862621 15867106 +
2 domain predictions
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LotjaGi1g1v0103100.2
n.a. Cbs domain protein; TAIR: AT5G10860.1 Cystathionine beta-synthase (CBS) family protein; Swiss-Prot: sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial; TrEMBL-Plants: tr|I3SU87|I3SU87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0103100 LjG1.1_chr1 15864386 15866461 +
2 domain predictions
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LotjaGi1g1v0325800.1
n.a. CBS domain-containing protein; TAIR: AT3G52950.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; Swiss-Prot: sp|Q9LF97|Y3295_ARATH CBS domain-containing protein CBSCBSPB3; TrEMBL-Plants: tr|G7J2M9|G7J2M9_MEDTR CBS/octicosapeptide/phox/Bemp1 (PB1) domain protein; Found in the gene: LotjaGi1g1v0325800 LjG1.1_chr1 77930308 77937241 +
2 domain predictions
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LotjaGi1g1v0337600.1
n.a. CBS domain-containing protein; TAIR: AT5G50530.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; Swiss-Prot: sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4; TrEMBL-Plants: tr|A0A0S3RFH2|A0A0S3RFH2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0337600 LjG1.1_chr1 79798520 79808486 +
2 domain predictions
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LotjaGi1g1v0337600.2
n.a. CBS domain-containing protein; TAIR: AT5G50530.1 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; Swiss-Prot: sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4; TrEMBL-Plants: tr|A0A0R0KHG6|A0A0R0KHG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0337600 LjG1.1_chr1 79800426 79807660 +
2 domain predictions
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LotjaGi1g1v0419800.1
n.a. CBS domain protein; TAIR: AT1G47271.1 Cystathionine beta-synthase (CBS) family protein; Swiss-Prot: sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial; TrEMBL-Plants: tr|A0A1J7FPF2|A0A1J7FPF2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0419800 LjG1.1_chr1 91334400 91337936 -
2 domain predictions
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LotjaGi1g1v0484000.1
n.a. CBS domain-containing family protein; TAIR: AT1G65320.1 Cystathionine beta-synthase (CBS) family protein; Swiss-Prot: sp|Q8GZA4|CBSX6_ARATH CBS domain-containing protein CBSX6; TrEMBL-Plants: tr|A0A0B2RAW6|A0A0B2RAW6_GLYSO CBS domain-containing protein CBSX6; Found in the gene: LotjaGi1g1v0484000 LjG1.1_chr1 99738264 99742334 +
2 domain predictions
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LotjaGi1g1v0566200.1
n.a. SNF1-related protein kinase regulatory subunit gamma 1; TAIR: AT3G48530.1 SNF1-related protein kinase regulatory subunit gamma 1; Swiss-Prot: sp|Q8LBB2|KING1_ARATH SNF1-related protein kinase regulatory subunit gamma-1; TrEMBL-Plants: tr|A0A151U795|A0A151U795_CAJCA SNF1-related protein kinase regulatory subunit gamma 1; Found in the gene: LotjaGi1g1v0566200 LjG1.1_chr1 109960136 109963013 +
2 domain predictions
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LotjaGi1g1v0623400.1
n.a. Chloride channel protein; TAIR: AT3G27170.1 chloride channel B; Swiss-Prot: sp|P92941|CLCA_ARATH Chloride channel protein CLC-a; TrEMBL-Plants: tr|A0A072TXX8|A0A072TXX8_MEDTR Chloride channel protein; Found in the gene: LotjaGi1g1v0623400 LjG1.1_chr1 117067421 117076012 -
2 domain predictions
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LotjaGi1g1v0623400.2
n.a. Chloride channel protein; TAIR: AT3G27170.1 chloride channel B; Swiss-Prot: sp|P92941|CLCA_ARATH Chloride channel protein CLC-a; TrEMBL-Plants: tr|I1N7R2|I1N7R2_SOYBN Chloride channel protein; Found in the gene: LotjaGi1g1v0623400 LjG1.1_chr1 117071407 117075755 -
2 domain predictions
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LotjaGi1g1v0772400.1
n.a. Sucrose nonfermenting 4-like protein; TAIR: AT1G09020.1 sucrose nonfermenting-like protein; Swiss-Prot: sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein; TrEMBL-Plants: tr|A0A1J7HL98|A0A1J7HL98_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0772400 LjG1.1_chr1 134507249 134527053 +
2 domain predictions
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LotjaGi2g1v0307400.2
n.a. SNF1-related kinase regulatory subunit gamma 1; TAIR: AT1G69800.1 Cystathionine beta-synthase (CBS) protein; Swiss-Prot: sp|Q9CAR3|KINGL_ARATH SNF1-related protein kinase regulatory subunit gamma-1-like; TrEMBL-Plants: tr|G7KB20|G7KB20_MEDTR SNF1-related kinase regulatory subunit gamma 1; Found in the gene: LotjaGi2g1v0307400 LjG1.1_chr2 78181991 78192799 -
2 domain predictions
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LotjaGi2g1v0307400.3
n.a. SNF1-related kinase regulatory subunit gamma 1; TAIR: AT1G69800.1 Cystathionine beta-synthase (CBS) protein; Swiss-Prot: sp|Q9CAR3|KINGL_ARATH SNF1-related protein kinase regulatory subunit gamma-1-like; TrEMBL-Plants: tr|G7KB20|G7KB20_MEDTR SNF1-related kinase regulatory subunit gamma 1; Found in the gene: LotjaGi2g1v0307400 LjG1.1_chr2 78183974 78186314 -
2 domain predictions
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LotjaGi2g1v0403700.1
n.a. Inosine-5'-monophosphate dehydrogenase; TAIR: AT4G36910.1 Cystathionine beta-synthase (CBS) family protein; Swiss-Prot: sp|O23193|CBSX1_ARATH CBS domain-containing protein CBSX1, chloroplastic; TrEMBL-Plants: tr|I3TA17|I3TA17_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0403700 LjG1.1_chr2 90090768 90101282 +
2 domain predictions
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LotjaGi2g1v0456400.1
n.a. Chloride channel protein; TAIR: AT5G26240.1 chloride channel D; Swiss-Prot: sp|P92943|CLCD_ARATH Chloride channel protein CLC-d; TrEMBL-Plants: tr|I1JAU5|I1JAU5_SOYBN Chloride channel protein; Found in the gene: LotjaGi2g1v0456400 LjG1.1_chr2 94949847 94960370 -
2 domain predictions
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LotjaGi2g1v0456400.2
n.a. Chloride channel protein; TAIR: AT5G26240.1 chloride channel D; Swiss-Prot: sp|P92943|CLCD_ARATH Chloride channel protein CLC-d; TrEMBL-Plants: tr|K7K5J8|K7K5J8_SOYBN Chloride channel protein; Found in the gene: LotjaGi2g1v0456400 LjG1.1_chr2 94949847 94960370 -
2 domain predictions
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LotjaGi2g1v0456400.3
n.a. Chloride channel protein; TAIR: AT5G26240.1 chloride channel D; Swiss-Prot: sp|P92943|CLCD_ARATH Chloride channel protein CLC-d; TrEMBL-Plants: tr|A0A067G541|A0A067G541_CITSI Chloride channel protein; Found in the gene: LotjaGi2g1v0456400 LjG1.1_chr2 94951360 94959868 -
2 domain predictions
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LotjaGi2g1v0456400.4
n.a. Chloride channel protein; TAIR: AT5G26240.1 chloride channel D; Swiss-Prot: sp|P92943|CLCD_ARATH Chloride channel protein CLC-d; TrEMBL-Plants: tr|I1JAU5|I1JAU5_SOYBN Chloride channel protein; Found in the gene: LotjaGi2g1v0456400 LjG1.1_chr2 94951403 94959868 -
2 domain predictions
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LotjaGi2g1v0456400.5
n.a. Chloride channel protein; TAIR: AT5G26240.1 chloride channel D; Swiss-Prot: sp|P92943|CLCD_ARATH Chloride channel protein CLC-d; TrEMBL-Plants: tr|I1JAU5|I1JAU5_SOYBN Chloride channel protein; Found in the gene: LotjaGi2g1v0456400 LjG1.1_chr2 94951416 94959868 -
2 domain predictions
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LotjaGi2g1v0456400.6
n.a. Chloride channel protein; TAIR: AT5G26240.1 chloride channel D; Swiss-Prot: sp|P92943|CLCD_ARATH Chloride channel protein CLC-d; TrEMBL-Plants: tr|I1JAU5|I1JAU5_SOYBN Chloride channel protein; Found in the gene: LotjaGi2g1v0456400 LjG1.1_chr2 94951416 94959868 -
2 domain predictions
 –