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LotjaGi1g1v0157600.1

Overview

Field Value
Gene ID LotjaGi1g1v0157600
Transcript ID LotjaGi1g1v0157600.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Proteasome subunit beta type; TAIR: AT1G21720.1 proteasome beta subunit C1; Swiss-Prot: sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A; TrEMBL-Plants: tr|I3S150|I3S150_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi1g1v0157600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:29282447..29287325) extracted from Lotus japonicus Gifu genome v1.2.

GAGAGCTTTAAAACCAAATACCAAATCGAAAACGTTTTTTCATAGTACACTTGCATTTGCAGAGGTAGAGGAACACTGGT TTGTCTTGTTGGAATCCAAAGATGTCAATCTTCGAGTACAATGGAAGTGCCATAGTCGCCATGGTTGGCAAGAACTGCTT CGCCATTGCCAGTGATCGCAGACTCGGCGTTCAGCTCCAAACCGTAGCCACCGATTTCCAAAGGATCTTCAAAGTTCACG ACAAGCTCTTCATCGCTCTCTCTGGTCTCGCCACCGATGCTCAGACACTGTAGTATACCCTTCTCTCAATTTTCACCCCC TTTCATGATTTTCTTCACTTTATTGTTCTTTCCCTAATTTTTGTTTGTTTTCTGATTCAAGGTACCAGCGTCTCGTTTTC CGACACAAGCTTTATCAGCTTCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCAAGCTTGGTCTCTGCTCTTCTTTA CGAGAAAAGGTAACACCCTTTGGATCCCAGATTCTTATGCAGAGAAACATTGTGGGATGTTTGGTTTTTCATTTTAATTT ACTGCAAAAACATGATTTTTATTTATTTACTATTATCACTTTTTTTTAACAGGAATTGGTGGAAATAAATTAAAAAAAAA TAAATAAATAAATACAATGGAGCATGTTTGCTATTAGAACTTAATCCAGTTGATGAAAGAAAGGCAAGTTACTAACTAGG GTTAATTGATTCATTTGGGGTTTGCTTGTTTTAATTGAATTTGAGTATAGGTTACTCCTTGTAGTAGTGAGTTCTGAAAG TATTGATTGAAACCCTTTTGTGGAAGGAAATCTTTGCTGGCCTAAAGAGTGATAAAATGTGTAGTTTCATTTGAATATGC TACTTACTTGTATTTGACTGCTAGTTAGAAGTTATAATTCTTTTATGCTGTGGATTTAGACACTGAGTTTGCTTGACTTT GACTGAAAAGATTAACAATCTATGGTAAGAAAAGAAAGTGAAGAGATTTGTTAGTTATTGGTAAAGTGCTGTTTTAACTT TAATAGAGGAGTTTGTATGGAAGTGAATGGACTGTGTGCTTGGCCTTGCAGTCTCACTTAACTTGCTTTTGTTTCCCCAT GGGGTTTGGAAGCTTTTTCCAGAATTGGCAATGCAGAGCCACTGAGCCAGTGAACATTGAACGCCCAGTTTTCAAATTTT GAGCTAAGTCAGATTATTTCATAACAGTTTTGGCCAACTGATGGTAAAGATATGAAAAGCAGAAGTTCATTTTCTGAACT AGATTAAATGCTTTGTTATTATTCCACTAGAAGAGGGGAAGGTGGGTTTGGTAATTATAAATATTTTAGATGAGCCGTGT TGAATTCCAATTTGTGGGAATGGTGGAGTTTTAGCCTTTTGAGCTAAGCCAAACATGTGATTCAACCCCCAATGAGCTTG ATGTGACTCCGCAAGCGTTTTTCTTCGACACCTAGTGGAAGTTGAGGGATTGAGTCATTAGTTAGGTCGTAGAATGATCT AAGTCTCAGTAACAGTGCGGGCTTAGGAATGTACGAGGATTGGGGTTTAAGCATTGAGCATCTACTTCTTGTAATCTTTA TTGAACATGCTTGAATTTTTCTCTCTTTCTTGCTGATTGGCGTAGACCTACAGCTTGTTGCAAGTTGAATTGAACCATGT TAAATTCTATATCTATTATTTTTTTCTTCCTTTCGGTTGTTTGTGTTACAACAAATCACAATTAATTATAATATTTTAGA TTCTCTTGTTATGTAGTTTATCTTAATAAACTCAATATGTTAAAACTTTGAACACAAAGTATGCATTCTTTTGCCTTTCA GGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCCGGATTAGGGGATGAAGACAAACCATTCATTTGCACAATGGATTGC ATTGGAGCAAAGTAAGTTCATTTGTTCTACAGTCCATATTTTCTTGTTGAGAGAGATTAATGAGTTAAAACTTGTAAATA GATGAAATTAGAGGATTTCGTATTTAAGGTGAAAAATAATACAAAGAATAAAATTGTATTATATATAGGGTGTGATCTTA CAAAAGACATAGCACTTACCCTTTATCTGTTGTAATGATAGGCTCCTTATTCTAGTTGAAAAACAAATCAATATAAATAA GGAAATAAGGAGACCGATCCTAAAGAATAATCCAAGTTACCATAAATTACTATACAACAATACAGAAACAAAAGTTTTAT CCCACTAAGTGAGGTCGGCTATATGAATCTCATGATGCATTGCGCTCGATCAAAAACCAAATGACCTTAAGATATGAGTA TCCTTTTATATTATAAAATAAATGTTGAAACCATTTTCAATTGGGCTACTTCAATGCCCGAACAGTTCTTGGATGTAGGA GAAAAACAACCCTAATATTTTCTTATGTGGAAGAAAATGAAGTGGTATGATTGTCATAGGCTAATGTTAGTTTCTACCAC TGAATATGATTTTGGTTTATTTATCCCCCCACCCCAGAAAAGCATTTCCTGGAGAATTGGTGTTTGCGATTTATGGTGAA CTCCTGCAAGGGGGTTGCTAAATAAATCAAGGTTTATGCATCATTGTTCACTACTTTTGACAACTAAGCTAGAGATACGT TATGATTGAATCTGCCCTTTGACTTCTTTGTCCTCTAATATGACAATATATTGCATGTTAATTTGAAGGTGCCTTTTATG CAAGTTTATTCTTCCCTTTCATCATTAGAGTAATCTGAGGCTTTATATAATTTCATATGAGATGTTATGCATCTGATACT AACACTAATATCGTTCTAATTTCTTGTATGCAGGGAGCTTGCAAAAGATTTTGTTGTTGCTGGCAGTGCATCTGAGTCTC TATACGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGGTTTGTGACGTAGCTACATGTTTTGTCTTTTATTCAACTCGC TTGTGTGATCTTGCGAATTGATGCAGTCATGTTTATGGACATCTCTAAATTGACATATGCACAAACTAGCGTACTTTCAC CTGGGTAGAATCTTGCCATAGATCCAAACCAGAACGTCATCCATGTATTGTAGACATCATATTGCTGCATGGTTGTAGAG TAAGCTTCACTGTCGAAGTGTAGATGAAAAAATAAGTCATCTTAGGTTTTAAACCTCAATTCGCTTGACTAGTAAGTTGA TGGATCGAACCTGTACCAGAATTTTTTTTTCTATAAGGTTATGTTTGAAAAATTATTGTAGAACTGAATCTTCTGCTCAG GGTAGGAGCAAATTCCCATCAGAATCTTTAAAATGTTGTGACATGAACATTTTGGCATAGTTCTACGATGAACAAGTTAA TTCACAATGATATTTTCTTGGAGAAGGGGTGAAGTCTGCATAAATGAATTTTAAAATGCTATTACATGTGCAGACATATA TGAGGTAAAGTAGTTAGCAAGTTACAAACCTGCAACAATAGCTGTGCAATTTCTATGGGAACGGAGTTGCTGAATGGAAA TATGATGTTTTCATGGTGTGTCGGAGGAGTTTGTGGTTCAAATAGAAAAGAACATTAGTAGTGTCTAAAATTTGCATCTT GTCTCACCATCAAAGTTTTGCACATTATCATAACTTATGATTTTGCTTAAAAGATATTTTTAATTTAGTTTCTTTATGTT CAATATTGGTTTCTTATCCTGACACAGGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCAGTAGA TCGTGACTGTTTAAGTGGCTGGGGCGGGCATGTCTATGTCGTGTAAGCATACAATTTCTTTATTTCTCTTAGCGGTTTGA TCTTATGATTTTACACTGTTGTTTTTAATCCTGGAGTTAAGTAAACAATATATTTAGTAGTTTTTTTATGCACTTTGTCC ATATTATATGCCCTACTGGTTGGTGTGGCTTTTGCATCCATGGAAAATAATTTTTACAAGAGAGCATGATGATGAAACCA AATCCTGACAGGGATGTGTGACTAGGCTACATGGCTTAGTAGCACCGGTTTATAGTAGTTACCCGTTCATTTTTACGCTT CGTCTTATTGCTTTAATGACTTTGAAAGAGAAACTTGCAATAGTCTAGGTTCTTCAAAATGTTGGTCTCTTTCATCTCTC TATTTTGCTTATTTGATTATTTCTCGTCCTTGAAATAAGGACATTTTAGGGTTCATTCTTTACTTATCCATAATATATTA TAGTAGTCACTTATTGGTATTTTAATTTGTATGTTGCAGCACGCCAACTGAAGTGAAGGAAAGGATTTTGAAGGGAAGAA TGGATTAACTTTTAAGCCACCTGGTCATGCATCTCACACCACTTTGTTTTCTTTCTAGTTCAGGGCTTTGTATTTTGGGA TCGAATGTTTAGTTCAAATTTACCACCCATTGTTGGGTACTTTGTTACTGCAGAACTTCAATTAAACGTATCCTCAAAAT TATTTACAAACAGGTTCACTTGTTCTGTATTTCTATTTCTGTTATAAGTGAAAGGAGAGCCTGGAGTCTTGCATGCTGTG AATTGAATTGAGTGACATTGGAATGTTAATTGGAGACTGACATGCAACCAGAATGATACAACAAAATTGCCCTCAAATCT ATTTTTCTCCGATCTGATTCTTCAAATGGGAAAATTTTATAGTCCTCACTGAGTACCGAGTTTTCCATACTTTTTTTATT CAAATTAAGACGAGGTTGTAGAAATTGTCACATGGTACATACTACATATACATACCATTTCCGATCAACAAATGTTAATG ATTTGTTAAAGGAAAGAGGAAAAAGTACATTTTTAATTAAAGGGACAAAGGCAATAAGAGAACATAACTTTGAGGATGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0157600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAATCTTCGAGTACAATGGAAGTGCCATAGTCGCCATGGTTGGCAAGAACTGCTTCGCCATTGCCAGTGATCGCAG ACTCGGCGTTCAGCTCCAAACCGTAGCCACCGATTTCCAAAGGATCTTCAAAGTTCACGACAAGCTCTTCATCGCTCTCT CTGGTCTCGCCACCGATGCTCAGACACTGTACCAGCGTCTCGTTTTCCGACACAAGCTTTATCAGCTTCGTGAAGAGAGG GATATGAAACCAGAGACCTTTGCAAGCTTGGTCTCTGCTCTTCTTTACGAGAAAAGGTTTGGTCCATACTTTTGCCAGCC TGTAATTGCCGGATTAGGGGATGAAGACAAACCATTCATTTGCACAATGGATTGCATTGGAGCAAAGGAGCTTGCAAAAG ATTTTGTTGTTGCTGGCAGTGCATCTGAGTCTCTATACGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGGAACCAGAG GAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCAGTAGATCGTGACTGTTTAAGTGGCTGGGGCGGGCATGTCTA TGTCGTCACGCCAACTGAAGTGAAGGAAAGGATTTTGAAGGGAAGAATGGATTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0157600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSIFEYNGSAIVAMVGKNCFAIASDRRLGVQLQTVATDFQRIFKVHDKLFIALSGLATDAQTLYQRLVFRHKLYQLREER DMKPETFASLVSALLYEKRFGPYFCQPVIAGLGDEDKPFICTMDCIGAKELAKDFVVAGSASESLYGACEAMFKPDMEPE ELFETISQALLSSVDRDCLSGWGGHVYVVTPTEVKERILKGRMD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.60.20.10
1 204 204 5.6E-61
IPR029055
PANTHER
PTHR11599
2 204 203 8.4E-130 –
PANTHER
PTHR11599:SF124
2 204 203 8.4E-130 –
SUPERFAMILY
SSF56235
4 204 201 5.29E-54
IPR029055
CDD
cd03759
6 200 195 4.26873E-132
IPR033811
Pfam
PF00227
7 189 183 6.9E-45
IPR001353
ProSiteProfiles
PS51476
8 189 182 49.999
IPR023333
ProSitePatterns
PS00854
12 59 48 -
IPR016050

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004175
Molecular function Endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
Subterm of
GO:0004298
Molecular function Threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
Subterm of
GO:0005839
Cellular component Proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
Subterm of
Part of
GO:0019774
Cellular component Proteasome core complex, beta-subunit complex The proteasome core subcomplex that constitutes the two inner rings of the proteasome core complex. An example of this component is found in Mus musculus.
Subterm of
Part of
GO:0043161
Biological process Proteasome-mediated ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
Subterm of
GO:0051603
Biological process Proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0157600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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