Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0195000 |
Transcript ID | LotjaGi1g1v0195000.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Peptidyl-prolyl cis-trans isomerase; TAIR: AT1G26550.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q6P4K8|PIN4_XENTR Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4; TrEMBL-Plants: tr|A7DX10|A7DX10_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0195000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:38670174..38671148) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAAAGATAAGACAAAGGAGGCAGGAGGGAAAGGCAAGGGGAAACAGGCAGCAAGTGGAAGTGATGAGAATGCTTC TAAAGGCAAAGGAAAAGGCGCGAAAGGTGGAGATGGGCTTGGTACTTGCACCTATGTTAAAGGTAGAAATTTTTCATCAT TTATTGGTACCTTAGAACTTATGTTCAGTTTCTTTCATTTTTGGTTGTTCAGAATGACATTGATTTATGGCTTCTTATTT TGCACAGCAAGGCATATCTTATGTGAGAAACAAGGTAAGATTAACGAAGCCTACAAGAAGCTGCAGGATGGTTGGCTTAG CAATGGAGATAAAGTCCCCCCAGCAGAGTTTGCAAAGGTATTTTTTGTTCCTGCTGGAGGTTATACATTGATTTTTGTTC TTGTTTCTTTTCCAAATCTTCATTCCGCCCCTCCCGCAACTGCCTTTTGTGAGTAATGTGATATTTGATTAGAGAAAAAA CACTCTTTTGAACACAATTGGCTTGTTTTTAAAAAAGTCGACACATTTTTCTAAATGAGAGGCTAAAAAAGTGTGGAAGT ATGCATTCAAAAGACTGTATTGTTAGCACTCCAAAACAAGATACTTGGTCATTTAAAACTAATATAGAAATAGAAATATT GTCACTTCAATGGTTTATCATCCATAATATTTCATTGATCTCACAGATAGCCCAAGAGTATTCTGAGTGTCCATCAGGAA AGAAGGGTGGAGATCTTGGATGGTTTCCCAGGGGAAAGATGGCTGGGCCATTTCAGGATGTTGCCTTCAACACAGTTGTT GGAGCTACTAGTGCTCCTTTCAAATCAACGTAGTTCTCTTTCTTGTGTACACTAATTGTTATTATCTTGCCGAATCCCAA TTCCTTATCCTCACATTATCACCTGCTAACCTTTGCTTGGATGATGATGCAGGCATGGCTACCATATCATCTTATCTGAA GGAAGAAAGAACTGA
CDS sequence (LotjaGi1g1v0195000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAAAGATAAGACAAAGGAGGCAGGAGGGAAAGGCAAGGGGAAACAGGCAGCAAGTGGAAGTGATGAGAATGCTTC TAAAGGCAAAGGAAAAGGCGCGAAAGGTGGAGATGGGCTTGGTACTTGCACCTATGTTAAAGCAAGGCATATCTTATGTG AGAAACAAGGTAAGATTAACGAAGCCTACAAGAAGCTGCAGGATGGTTGGCTTAGCAATGGAGATAAAGTCCCCCCAGCA GAGTTTGCAAAGATAGCCCAAGAGTATTCTGAGTGTCCATCAGGAAAGAAGGGTGGAGATCTTGGATGGTTTCCCAGGGG AAAGATGGCTGGGCCATTTCAGGATGTTGCCTTCAACACAGTTGTTGGAGCTACTAGTGCTCCTTTCAAATCAACGCATG GCTACCATATCATCTTATCTGAAGGAAGAAAGAACTGA
Protein sequence (LotjaGi1g1v0195000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKDKTKEAGGKGKGKQAASGSDENASKGKGKGAKGGDGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPPA EFAKIAQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFNTVVGATSAPFKSTHGYHIILSEGRKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 39 | 39 | - | – | |
PANTHER | 1 | 145 | 145 | 1.5E-78 | – | |
PANTHER | 1 | 145 | 145 | 1.5E-78 | ||
Gene3D | 40 | 144 | 105 | 1.2E-29 | – | |
ProSiteProfiles | 43 | 142 | 100 | 24.099 | ||
SUPERFAMILY | 44 | 144 | 101 | 2.42E-24 | – | |
Pfam | 46 | 138 | 93 | 4.8E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). |
Expression pattern of LotjaGi1g1v0195000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…