Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0195000.2

Overview

Field	Value
Gene ID	LotjaGi1g1v0195000
Transcript ID	LotjaGi1g1v0195000.2
Related isoforms 1	LotjaGi1g1v0195000.1
Lotus japonicus genome version	Gifu v1.2
Description	Peptidyl-prolyl cis-trans isomerase; TAIR: AT1G26550.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp\|Q6P4K8\|PIN4_XENTR Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4; TrEMBL-Plants: tr\|A7DX10\|A7DX10_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0195000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:38670174..38671148) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGAAAAGATAAGACAAAGGAGGCAGGAGGGAAAGGCAAGGGGAAACAGGCAGCAAGTGGAAGTGATGAGAATGCTTC TAAAGGCAAAGGAAAAGGCGCGAAAGGTGGAGATGGGCTTGGTACTTGCACCTATGTTAAAGGTAGAAATTTTTCATCAT TTATTGGTACCTTAGAACTTATGTTCAGTTTCTTTCATTTTTGGTTGTTCAGAATGACATTGATTTATGGCTTCTTATTT TGCACAGCAAGGCATATCTTATGTGAGAAACAAGGTAAGATTAACGAAGCCTACAAGAAGCTGCAGGATGGTTGGCTTAG CAATGGAGATAAAGTCCCCCCAGCAGAGTTTGCAAAGGTATTTTTTGTTCCTGCTGGAGGTTATACATTGATTTTTGTTC TTGTTTCTTTTCCAAATCTTCATTCCGCCCCTCCCGCAACTGCCTTTTGTGAGTAATGTGATATTTGATTAGAGAAAAAA CACTCTTTTGAACACAATTGGCTTGTTTTTAAAAAAGTCGACACATTTTTCTAAATGAGAGGCTAAAAAAGTGTGGAAGT ATGCATTCAAAAGACTGTATTGTTAGCACTCCAAAACAAGATACTTGGTCATTTAAAACTAATATAGAAATAGAAATATT GTCACTTCAATGGTTTATCATCCATAATATTTCATTGATCTCACAGATAGCCCAAGAGTATTCTGAGTGTCCATCAGGAA AGAAGGGTGGAGATCTTGGATGGTTTCCCAGGGGAAAGATGGCTGGGCCATTTCAGGATGTTGCCTTCAACACAGTTGTT GGAGCTACTAGTGCTCCTTTCAAATCAACGTAGTTCTCTTTCTTGTGTACACTAATTGTTATTATCTTGCCGAATCCCAA TTCCTTATCCTCACATTATCACCTGCTAACCTTTGCTTGGATGATGATGCAGGCATGGCTACCATATCATCTTATCTGAA GGAAGAAAGAACTGA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0195000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAAAAGATAAGACAAAGGAGGCAGGAGGGAAAGGCAAGGGGAAACAGGCAGCAAGTGGAAGTGATGAGAATGCTTC TAAAGGCAAAGGAAAAGGCGCGAAAGGTGGAGATGGGCTTGGTACTTGCACCTATGTTAAAGCAAGGCATATCTTATGTG AGAAACAAGGTAAGATTAACGAAGCCTACAAGAAGCTGCAGGATGGTTGGCTTAGCAATGGAGATAAAGTCCCCCCAGCA GAGTTTGCAAAGATAGCCCAAGAGTATTCTGAGTGTCCATCAGGAAAGAAGGGTGGAGATCTTGGATGGTTTCCCAGGGG AAAGATGGCTGGGCCATTTCAGGATGTTGCCTTCAACACAGTTGTTGGAGCTACTAGTGCTCCTTTCAAATCAACGCATG GCTACCATATCATCTTATCTGAAGGAAGAAAGAACTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0195000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGKDKTKEAGGKGKGKQAASGSDENASKGKGKGAKGGDGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPPA EFAKIAQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFNTVVGATSAPFKSTHGYHIILSEGRKN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	39	39	-	–
PANTHER	PTHR45995:SF1 View details on PTHR45995:SF1 Search for proteins/transripts with this domain View external data on PTHR45995:SF1	1	145	145	1.5E-78	–
PANTHER	PTHR45995 View details on PTHR45995 Search for proteins/transripts with this domain View external data on PTHR45995	1	145	145	1.5E-78	IPR043323 Show description in modal box View details on IPR043323 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.10.50.40 View details on G3DSA:3.10.50.40 Search for proteins/transripts with this domain View external data on G3DSA:3.10.50.40	40	144	105	1.2E-29	–
ProSiteProfiles	PS50198 View details on PS50198 Search for proteins/transripts with this domain View external data on PS50198	43	142	100	24.099	IPR000297 Show description in modal box View details on IPR000297 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54534 View details on SSF54534 Search for proteins/transripts with this domain View external data on SSF54534	44	144	101	2.42E-24	–
Pfam	PF13616 View details on PF13616 Search for proteins/transripts with this domain View external data on PF13616	46	138	93	4.8E-19	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003755 View details of GO:0003755 AmiGO InterPro QuickGO	Molecular function	Peptidyl-prolyl cis-trans isomerase activity	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).	Subterm of View details of GO:0016859 View details of GO:0140096

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0195000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…