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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000297
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 7 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.623s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v0524360.1
n.a. parvulin-type peptidyl-prolyl cis/trans isomerase [Lotus japonicus] gi|152955223|emb|CAM59672.1| chr1 6573993 6575757 +
2 domain predictions
1 GO term
Lj2g3v3022830.1
n.a. parvulin-type peptidyl prolyl cis/trans isomerase [Lotus japonicus] gi|152955225|emb|CAM59673.1| chr2 39054424 39058827 -
2 domain predictions
1 GO term
Lj4g3v1034350.1
n.a. parvulin-type peptidyl-prolyl cis/trans isomerase [Lotus japonicus] gi|152955221|emb|CAM59671.1| chr4 14659763 14662388 -
3 domain predictions
1 GO term
LotjaGi1g1v0051200.1
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT5G19370.1 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein; Swiss-Prot: sp|Q93WI0|STR12_ARATH Rhodanese-like/PpiC domain-containing protein 12, chloroplastic; TrEMBL-Plants: tr|A7DX11|A7DX11_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0051200 LjG1.1_chr1 7273540 7278189 +
2 domain predictions
1 GO term
LotjaGi1g1v0195000.1
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT1G26550.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q6P4K8|PIN4_XENTR Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4; TrEMBL-Plants: tr|A7DX10|A7DX10_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0195000 LjG1.1_chr1 38666516 38672224 -
2 domain predictions
1 GO term
LotjaGi1g1v0195000.2
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT1G26550.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q6P4K8|PIN4_XENTR Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4; TrEMBL-Plants: tr|A7DX10|A7DX10_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0195000 LjG1.1_chr1 38670174 38671148 -
2 domain predictions
1 GO term
LotjaGi4g1v0126600.1
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT2G18040.1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1; Swiss-Prot: sp|Q94G00|PIN1_MALDO Peptidyl-prolyl cis-trans isomerase Pin1; TrEMBL-Plants: tr|A7DX09|A7DX09_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi4g1v0126600 LjG1.1_chr4 18491773 18494010 -
3 domain predictions
1 GO term