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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0231000 |
| Transcript ID | LotjaGi1g1v0231000.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem I assembly protein Ycf3; TAIR: AT5G63200.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q6PGP7|TTC37_HUMAN Tetratricopeptide repeat protein 37; TrEMBL-Plants: tr|V7AXD9|V7AXD9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0231000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:54157831..54163610) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAATTGAGGGTGCATAACTACATATAGAGAATGCTGAAAGCGAAACCTAAAACACAGGAGAAATGGCGGATAAGC TGGGAGGAGCAGCAGCTGAACAGAGCTTGAACTCGAAGAGTTCACACCAAACGACTTCGAAGCTCGTCGTTTTGGCTGAC CTCAACGTCAATCCTCCCGAAGCCGAAGCCGACGACGACGATTCTTCCCTTCTCCCTCCTCCCCAAATCATTACCAGGTT TTCTTCCTCTCATTTCACTTCCATTTTTCTTTTTCCATTATTTTTTCTTTCTTATTCAGATTGAATTGGAATTTAGGAAT GGAATTGTATTTATACACCAGTGTTTGCAAACTGATGCAACGAATCATGTAATGTAACTAACGCAATTGCTAACTGACTA ACAAACTAACTGATTAACTTTAAAAAATAACTTAATTGTTGTAAATTGTAAAAGGACCTTTGGAATCATAACTTGTAATT TTATGAAACATAGTGTATGGCAATGAGGTTGTTGCTCAATTGGCAATTTCTTTTAAGACTTGGGTGAGATCCAAAGCTGG CTTACATTGAAATCCATTTTGTCATAAAAAATCCATTTTCTTGATCATTAATCATTCAGTCGTCCCACAGTTTTTCCAGA AAAAATGTTATTGAGTTGGTTGGAGTGGGTGGGACCATAGTAGTCGAAATCGGGAAGGGGGATGTAAATCGTAAAATCGA TAAGTCATAAGATTTAGTACATTTCCTATATATATGTGCGTGCGTGCATATAAAATAGCACAAATAAAAACAGAATGGAG AGCAGAGAAAAAAAAAACACTAGAACAGAGTAAACAGCCAGTTTAGGGAGTTGGTGTGCAATTTAGCACTGATTTAGCCG TGAAATTTGCAGAGATTTAGGGAGTTAGGGTGCGATTTAGCACTGATTTAGCCAAATGCGATTTAGATGGCGATTAAATC ACAGGGTGCTCTCGAATCGTAAAATCGTACAATTTAGCGATTTAGATCGTGATTTTGACTACCATGGGTGGGACCTGCTA CTCTCAGATGAATTATCTAATCAGTGTTATCAAATAGCGGCTATAGCGGCGCTACGCCGCTCTCCGCTATAGCATAGCGG ATTTTTGGCTAATCGCGACGGCGCTATTGCCCACTATAGCGTGCTATTCCCGCTATTCGCTGCTAAATAGCGGCCGAAAT AGCGGATTTTTGGCTCACCCCGATGGTCCGCGATCGCGATTTGACAACACTGATATTAATACTGAATATAGTTCTGTTGC TTCCTGTCATTTATTGATTTTTTGCATTCATGTATAGGTTGACAAATGACGAAAACAGTCAAGATAAGAGTCTGTTGTCC AAAGACACTGATAGTACTGAAGGCGAAGGTAAAAAGTCGCACAAACTGGGGAAATGCCGCTCCAGACCTAGCAAGACAGA TTCTCTTGATTGTGGGGGTGATGCAGATGTTGATCAACATGTACAAGGAGCTCCTTCATCCCGGGAGGAAAAAGTTAGCA GCATGAAGACTGTGAGTTCACTGTCACAAATCATTAAAATATTCCCTTTTATCTAAACTATCCCACTGCTGAACTCAAAA TTTGTCAGTTAATCAGTCGAACTGTGCTTAAGGATTTCAGTTAGTGAGTCAGTCAGTGTTTTCAAATATATGCCATGGCG GGTTTTTGGCTCTCCACCATGGCCCATATGCCACCATAATCCGCATCATTTTTTGTCAAATATGGCGGGTTCTGGCTCCG CCATTAACAACCTTGGAGTCAGTCCATCTTTCCTAATAAAAATATTACCTTTTGTTGTAAACACGGAATCAAAGACCTCA GAATATCTTTTATGAATTATTTTTTTCTGTTTGTTGAAGTATTTAGGCAATCATTATGTTATCTGGGAAATCAGAACAGA AATATTTCGTCTGTATTTTTTTTCCAGTAAAATACATTAGTAGATGGATCATATGTAGGAATGCAGATGGAGATTTTTTT TTTTTTCACTCATGTTTTTCATGATTCATTGAAATATTTCTAGCCATCCAGTGTAGGATCTGATGGATGCCTGTTGAAGA TAAAGGCATTTTGCTTGTTCCTATGTTATCATCTAAAATGAAATTCCTAATATTTTTCTCAAGTGGTGAACATGAATAGT TGATGTAACTATTATGTATTGTAACGGAAAATGCTGTATTTCTTGGGACAAAGTGAGCCAGTGAGGCACCAAAGCTAACA TATCATGTCCCTCTGTCCTTCATTTCTATTTGCAGAATAGCATGATTTAGATATCAACTCAATTCAGATGATTTATGCCT TAACTAATGTCTCTCAATTGGTCATTTATTGTTTTGCTTATCGTTTCTCATGATGGGGTTTATTCTATGACCATATTAGG ATCTATGACCATGAATCATGTTGAATACAAGCTGTTCAATGAATAACTTTACCATAAGTGAGTTTAGATTGCTTCCTTCT TATCACCATATTTCTCTGTTTGGATCAATGGTTTTTTGTGGCAAAGAGGGAGGATGGAAAACCAAAAATACAATATTGAC ACATTAGTAATATATTTTTATGGTTGGCCATTGTTATTGTTTTTGTTATAGACTTATTGTTGTTTATCATCATTATTGCT GCTGTTATTGTTTTTGTTTATTACTGACTACATATGTTCATGCTTGTAGGGCTTGATTCATGTTGCGAGGAAGATGCCCA AAAATGCTCATGCTCATTTTATACTTGGCTTGATGCACCAAAGATTAAACCAGCCTCAAAAGGTTGTCCTTTAACATTCA CGTGTTCGATTTTGTACATATATGTTTGCTCATTGAGTCATTAATTTTTTTTTGCAGGCTATACTGGTTTATGAGAAGGC AGAAGAGATCTTACTCAGGCCTGAGACTGAGATTGAGAGGCCAGATTTGCTTTCTTTAGTTCAGATTCACCATGCCCAGG TGCAATAACCTTGATTTGATAGATTAATGATTCTAATCTTTTGGTTCATTGACATTTTTTATAATCCTTATAGTGCTTGA TACTCGAAAGCTCATCAGAAAACAGTTCAGATAAAGAACTCGAACCTCACGAACTTAAGGAAATTCTTTCTAAACTTAAA GAGTCAGTGCAGTTTGATATCAGACAGGCAGCTGTATGGAATACACTAGGTTTTATCCTTCTTAAAACTGGTCGTGTGCA GGTACAAGTACCTTATGCTCTCTTCCTTATGCTTTTATGTTCTCAAGGCATATATGATGTTTCTTTCAGTTTCAGTATTA GATGTGAGTCATGTGACTACTTTTCCTTTTCCTTCACCAATGTGAACTTCAAAAACATATGCAGAGTGCTATCTCAGTTT TGTCATCGTTGTTAGCCATTGCTCCAGAGAACTACGATTGTCTAGGAAATCTTGGGATAGCTTATCTTCAAATGTAAGTT TGAATGGAAATTGCTGTATATTTATTACATTGAATTATTTTGGAAATGTCATTTGTGTCTTCAATTGAAAAGAGTTTATA TGTGTCTTTACTCCGTGCATATCGTTCCTCAGTACTGTTACTGTGTTACCTTGCAGTGGGAATTTGGAATTATCCGCAAA ATGTTTTCAGGAGTTGATTCTAAAAGACCAAAACCATCCCGTAGCTTTGGTCAATTATGCTGCCCTTCTTTTGTGTAAAT ATGCTTCAGTAGTAGCAGGTACTATAAAGTCCATGCGCTCAATTTTTCATTTGTCTATTATTAAGTGGTTGAAGAAGTTT TTGTAATATGGTTTTCATTTTTCATCATATTGAATCTTCATTATTTCCAGGTGCTGGTGCAAGTGCGTCTGAAGGTGCTT TAGCAGATCAGGTGATGGCTGCTAATGTTGCTAAGGAATGTTTGTTAGCTGCAATTAAAGCAGATGTCAAATCAGCCCAT ATCTGGGGAAATCTTGCCTATGCATTTTCTATTAGTGGTGATCATCGAAGTTCCAGCAAGTGTTTAGAGAAGGTGCTCAT GGACCCTTGCTACAGTCATTTATAACGTATTTATTGTGAGGTTGTTCATTGGTTTTCTGGTCCTTGTTTTTGGTGGAGAT GTTTTGATCTTTGATTCTCTGCAACAAATTTTTTGTCATCCTTTCTTATGCGTTATGTATCATAATTAATATTAAAATTA GCAGGAATCACTAATTAATTATGCATGTATTGCATTTTGGCTAGTGTTACTGTCATTTTTAACATTTTTTAAAAATCAGC TTCTGCGGAAGCTTTTTGACTATGTGTATATTGTGATTTACATTTTCCCCCTTCCCTCTGATGCCATTGCTTTGTAGGCA GCAAAACTTGAACCTAATTGCATGTCTACCCGATATGCTGTTGCTACCCATCGAATGAAGGAGGCAGAAAGATCTCAAGA TCCTAGTGAACTGCTTTCATTCGGTGGAAATGAGATGGCTTCTATAATAAGAGATGGTGACTCATCTTTGGTTGAGCTTC CAACAGCCTGGGCTGGGCTTGCCATGGTTCACAAGGCTCAGCATGAGATATCATCAGCATACGAAAGTGAACAGCATGTG CTGACAGAAATGGAAGAGCGTGCTGTTTGCAGTTTAAAGCAGGTAGTTTATTACTTTCCTCCATTTATCGCATGCTTTCT CTTAAGTATATACCTGCTAATTGGGCTCTTATCATGCACGGTGTGCAGTTTACACAGCTTATCTGAAATGCCATTCTTTT TCTACTAGGCCGTAGCAGAAGATCCAGATGATCCTGTGCGGTGGCACCAACTTGGCGTTCATAGTCTTTGTACCCAGCAA TTCAAAACATCACAAAAATACCTTAAAGCTGCTGTTGCCTGTGACAGAGGTTGTAGCTATACATGGTCTAACCTCGGTAC TCTCTCTCTCTCTCTCTCTCTCTCAATAGGAATTTGCATTTTCTCATGTTCAATGTTGTATGCTTTTGGTGTTGCCAATT GTAGTCTGGTACTTGGACTCCCTCTTTCATTAGTTTTTCCTGTTTGGATATGGATTAAAGAGTACTTATTGAAGCTTATC TACTTAAAAAAACACTGGATAAGCTTCAATGACTGCTCTTTGGTCCGCATCCAAACAGGCTCCTATTCCCTTTTATAGGT GTGTTCATGGGTTAAAAATGCATGTATAGGTGTATCACTTCAACTATCGGAAGAGCCATCACAAGCTGAAAAGGCATATA AGCAAGCTTTGTTATTGGCAACAAAACAACAAGCACATGCTATTCTGTCCAATTTGGGAATATTCTATCGCCATGAGAAG AAATATCAACGTGCGAAGGCTATGTTCACAAAGTCACTTGAACTGCAGCCTGGGTACGCTCCTGCATTCAACAATCTAGG TCTTGTGTTTGTTGCTGAGGGTCTGTTGGAAGAGGCCAAGTATTGTTTTGAAAAAGCTCTGCAATCTGATCCATTGCTCG ATGCAGCTAAGTCTAACTTGGTTAAGGTGGTTACGATGTCAAAGATATGTAAAGGCCTTCTTAAAGAATGATATTGTTGT TCCTTTCATCTGCTGTATATCCATTTATCATAATCAATCAAGAAGAAGTGCACTTGTATCATTACGTGATTTGAAGTGAA AGATAGAGTGAAAATGATCGAGCAAAGTGAATGATGCGTGAAAATGAAATTACCTATTTGTATAATTATTAATGAAGATG TTATTTTTTTTATGCTGATTAATGAAAATATACTAATAAAAAGTAAAAATAAAAAACAAACCAAACGGACCCCTATGTTG ATATTTTTAATTTAATGGTT
CDS sequence (LotjaGi1g1v0231000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGATAAGCTGGGAGGAGCAGCAGCTGAACAGAGCTTGAACTCGAAGAGTTCACACCAAACGACTTCGAAGCTCGT CGTTTTGGCTGACCTCAACGTCAATCCTCCCGAAGCCGAAGCCGACGACGACGATTCTTCCCTTCTCCCTCCTCCCCAAA TCATTACCAGGTTGACAAATGACGAAAACAGTCAAGATAAGAGTCTGTTGTCCAAAGACACTGATAGTACTGAAGGCGAA GGTAAAAAGTCGCACAAACTGGGGAAATGCCGCTCCAGACCTAGCAAGACAGATTCTCTTGATTGTGGGGGTGATGCAGA TGTTGATCAACATGTACAAGGAGCTCCTTCATCCCGGGAGGAAAAAGTTAGCAGCATGAAGACTGGCTTGATTCATGTTG CGAGGAAGATGCCCAAAAATGCTCATGCTCATTTTATACTTGGCTTGATGCACCAAAGATTAAACCAGCCTCAAAAGGCT ATACTGGTTTATGAGAAGGCAGAAGAGATCTTACTCAGGCCTGAGACTGAGATTGAGAGGCCAGATTTGCTTTCTTTAGT TCAGATTCACCATGCCCAGTGCTTGATACTCGAAAGCTCATCAGAAAACAGTTCAGATAAAGAACTCGAACCTCACGAAC TTAAGGAAATTCTTTCTAAACTTAAAGAGTCAGTGCAGTTTGATATCAGACAGGCAGCTGTATGGAATACACTAGGTTTT ATCCTTCTTAAAACTGGTCGTGTGCAGAGTGCTATCTCAGTTTTGTCATCGTTGTTAGCCATTGCTCCAGAGAACTACGA TTGTCTAGGAAATCTTGGGATAGCTTATCTTCAAATTGGGAATTTGGAATTATCCGCAAAATGTTTTCAGGAGTTGATTC TAAAAGACCAAAACCATCCCGTAGCTTTGGTCAATTATGCTGCCCTTCTTTTGTGTAAATATGCTTCAGTAGTAGCAGGT GCTGGTGCAAGTGCGTCTGAAGGTGCTTTAGCAGATCAGGTGATGGCTGCTAATGTTGCTAAGGAATGTTTGTTAGCTGC AATTAAAGCAGATGTCAAATCAGCCCATATCTGGGGAAATCTTGCCTATGCATTTTCTATTAGTGGTGATCATCGAAGTT CCAGCAAGTGTTTAGAGAAGGCAGCAAAACTTGAACCTAATTGCATGTCTACCCGATATGCTGTTGCTACCCATCGAATG AAGGAGGCAGAAAGATCTCAAGATCCTAGTGAACTGCTTTCATTCGGTGGAAATGAGATGGCTTCTATAATAAGAGATGG TGACTCATCTTTGGTTGAGCTTCCAACAGCCTGGGCTGGGCTTGCCATGGTTCACAAGGCTCAGCATGAGATATCATCAG CATACGAAAGTGAACAGCATGTGCTGACAGAAATGGAAGAGCGTGCTGTTTGCAGTTTAAAGCAGGCCGTAGCAGAAGAT CCAGATGATCCTGTGCGGTGGCACCAACTTGGCGTTCATAGTCTTTGTACCCAGCAATTCAAAACATCACAAAAATACCT TAAAGCTGCTGTTGCCTGTGACAGAGGTTGTAGCTATACATGGTCTAACCTCGGTGTATCACTTCAACTATCGGAAGAGC CATCACAAGCTGAAAAGGCATATAAGCAAGCTTTGTTATTGGCAACAAAACAACAAGCACATGCTATTCTGTCCAATTTG GGAATATTCTATCGCCATGAGAAGAAATATCAACGTGCGAAGGCTATGTTCACAAAGTCACTTGAACTGCAGCCTGGGTA CGCTCCTGCATTCAACAATCTAGGTCTTGTGTTTGTTGCTGAGGGTCTGTTGGAAGAGGCCAAGTATTGTTTTGAAAAAG CTCTGCAATCTGATCCATTGCTCGATGCAGCTAAGTCTAACTTGGTTAAGGTGGTTACGATGTCAAAGATATGTAAAGGC CTTCTTAAAGAATGA
Protein sequence (LotjaGi1g1v0231000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADKLGGAAAEQSLNSKSSHQTTSKLVVLADLNVNPPEAEADDDDSSLLPPPQIITRLTNDENSQDKSLLSKDTDSTEGE GKKSHKLGKCRSRPSKTDSLDCGGDADVDQHVQGAPSSREEKVSSMKTGLIHVARKMPKNAHAHFILGLMHQRLNQPQKA ILVYEKAEEILLRPETEIERPDLLSLVQIHHAQCLILESSSENSSDKELEPHELKEILSKLKESVQFDIRQAAVWNTLGF ILLKTGRVQSAISVLSSLLAIAPENYDCLGNLGIAYLQIGNLELSAKCFQELILKDQNHPVALVNYAALLLCKYASVVAG AGASASEGALADQVMAANVAKECLLAAIKADVKSAHIWGNLAYAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVATHRM KEAERSQDPSELLSFGGNEMASIIRDGDSSLVELPTAWAGLAMVHKAQHEISSAYESEQHVLTEMEERAVCSLKQAVAED PDDPVRWHQLGVHSLCTQQFKTSQKYLKAAVACDRGCSYTWSNLGVSLQLSEEPSQAEKAYKQALLLATKQQAHAILSNL GIFYRHEKKYQRAKAMFTKSLELQPGYAPAFNNLGLVFVAEGLLEEAKYCFEKALQSDPLLDAAKSNLVKVVTMSKICKG LLKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 124 | 124 | - | – | |
| MobiDBLite | 11 | 29 | 19 | - | – | |
| PANTHER | 12 | 641 | 630 | 0.0 | – | |
| MobiDBLite | 66 | 105 | 40 | - | – | |
| Gene3D | 130 | 334 | 205 | 7.4E-23 | ||
| SMART | 141 | 174 | 34 | 9.9 | ||
| ProSiteProfiles | 141 | 174 | 34 | 6.903 | ||
| ProSiteProfiles | 141 | 174 | 34 | 6.579 | ||
| Pfam | 141 | 170 | 30 | 0.16 | ||
| SUPERFAMILY | 208 | 629 | 422 | 3.1E-30 | ||
| ProSiteProfiles | 232 | 265 | 34 | 9.293 | ||
| SMART | 232 | 265 | 34 | 0.45 | ||
| ProSiteProfiles | 232 | 299 | 68 | 15.054 | ||
| Pfam | 242 | 301 | 60 | 1.9E-6 | – | |
| SMART | 266 | 299 | 34 | 0.016 | ||
| ProSiteProfiles | 266 | 299 | 34 | 7.405 | ||
| Gene3D | 337 | 467 | 131 | 1.5E-6 | ||
| ProSiteProfiles | 355 | 388 | 34 | 7.877 | ||
| SMART | 355 | 388 | 34 | 0.036 | ||
| Pfam | 355 | 388 | 34 | 4.3E-4 | ||
| ProSiteProfiles | 355 | 388 | 34 | 7.846 | ||
| SMART | 435 | 468 | 34 | 330.0 | ||
| ProSiteProfiles | 467 | 621 | 155 | 23.408 | ||
| Gene3D | 468 | 556 | 89 | 1.8E-12 | ||
| SMART | 484 | 517 | 34 | 360.0 | ||
| ProSiteProfiles | 518 | 551 | 34 | 7.139 | ||
| SMART | 518 | 551 | 34 | 0.1 | ||
| Pfam | 554 | 616 | 63 | 1.2E-7 | – | |
| ProSiteProfiles | 554 | 587 | 34 | 10.06 | ||
| SMART | 554 | 587 | 34 | 4.8E-4 | ||
| Gene3D | 557 | 639 | 83 | 4.4E-16 | ||
| SMART | 588 | 621 | 34 | 0.011 | ||
| ProSiteProfiles | 588 | 621 | 34 | 9.853 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0231000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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