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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013026
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 370 results. Now displaying 1 of 8 with 50 rows per page. This search has taken 5.962s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0015749.1
n.a. binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297819316|ref|XP_002877541.1| chr0 6127509 6129344 +
2 domain predictions
1 GO term
Lj0g3v0069469.1
n.a. PREDICTED: tetratricopeptide repeat protein 33-like [Cicer arietinum] gi|502124029|ref|XP_004498353.1| chr0 25119143 25122855 -
2 domain predictions
1 GO term
Lj0g3v0071309.1
n.a. PREDICTED: tetratricopeptide repeat protein 4 homolog [Glycine max] gi|356545912|ref|XP_003541377.1| chr0 26106771 26112108 +
2 domain predictions
1 GO term
Lj0g3v0084729.1
n.a. PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein-like isoform 1 [Glycine max] gi|356549136|ref|XP_003542953.1| chr0 33772350 33779773 +
2 domain predictions
1 GO term
Lj0g3v0087729.1
n.a. PREDICTED: E3 ubiquitin-protein ligase CHIP-like [Glycine max] gi|356558963|ref|XP_003547771.1| chr0 35709696 35710276 +
2 domain predictions
1 GO term
Lj0g3v0089599.1
n.a. PREDICTED: ethylene-overproduction protein 1-like [Glycine max] gi|356541801|ref|XP_003539361.1| chr0 36791674 36793456 -
2 domain predictions
1 GO term
Lj0g3v0091679.1
n.a. PREDICTED: peptidyl-prolyl isomerase PASTICCINO1-like [Glycine max] gi|356504332|ref|XP_003520950.1| chr0 37995719 38008484 +
2 domain predictions
1 GO term
Lj0g3v0094889.1
n.a. PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha-like [Glycine max] gi|356512940|ref|XP_003525172.1| chr0 39929297 39932963 -
2 domain predictions
1 GO term
Lj0g3v0096099.1
n.a. PREDICTED: anaphase-promoting complex subunit 6-like [Cicer arietinum] gi|502169527|ref|XP_004514627.1| chr0 40478236 40487538 -
2 domain predictions
1 GO term
Lj0g3v0105529.1
n.a. PREDICTED: protein SGT1 homolog B-like [Glycine max] gi|356559728|ref|XP_003548149.1| chr0 45284779 45289521 +
2 domain predictions
1 GO term
Lj0g3v0114629.1
n.a. PREDICTED: clustered mitochondria protein-like isoform X1 [Cicer arietinum] gi|502170858|ref|XP_004514933.1| chr0 50267301 50282465 +
2 domain predictions
1 GO term
Lj0g3v0117999.1
n.a. Kinesin light chain [Medicago truncatula] gi|357461993|ref|XP_003601278.1| chr0 52145145 52146634 +
2 domain predictions
1 GO term
Lj0g3v0118009.1
n.a. Kinesin light chain [Medicago truncatula] gi|357461993|ref|XP_003601278.1| chr0 52146581 52148402 +
2 domain predictions
1 GO term
Lj0g3v0121109.1
n.a. PREDICTED: cell division cycle protein 27 homolog B-like, partial [Cucumis sativus] gi|449518364|ref|XP_004166212.1| chr0 53951300 53952775 -
2 domain predictions
1 GO term
Lj0g3v0134189.1
n.a. Small glutamine-rich tetratricopeptide repeat-containing protein [Medicago truncatula] gi|357489549|ref|XP_003615062.1| chr0 61446624 61450396 -
2 domain predictions
1 GO term
Lj0g3v0167769.1
n.a. Tetratricopeptide repeat-like superfamily protein isoform 1 [Theobroma cacao] gi|508698909|gb|EOX90805.1| chr0 79865918 79868056 -
2 domain predictions
1 GO term
Lj0g3v0175019.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein / tetratricopeptide repeat-containing protein [Theobroma cacao] gi|508783988|gb|EOY31244.1| chr0 84473202 84476019 +
2 domain predictions
1 GO term
Lj0g3v0198579.1
n.a. PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] gi|356556372|ref|XP_003546500.1| chr0 96943606 96955709 +
2 domain predictions
1 GO term
Lj0g3v0199849.1
n.a. PREDICTED: clustered mitochondria protein-like [Cicer arietinum] gi|502147896|ref|XP_004506958.1| chr0 98368328 98377624 -
2 domain predictions
1 GO term
Lj0g3v0200169.1
n.a. PREDICTED: tankyrase-2-like [Cicer arietinum] gi|502114478|ref|XP_004494966.1| chr0 98684484 98687085 +
2 domain predictions
1 GO term
Lj0g3v0212469.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Glycine max] gi|356511742|ref|XP_003524582.1| chr0 107221596 107225718 -
2 domain predictions
1 GO term
Lj0g3v0251739.1
n.a. SET domain protein [Medicago truncatula] gi|357474929|ref|XP_003607750.1| chr0 130565297 130567433 -
2 domain predictions
1 GO term
Lj0g3v0281769.1
n.a. PREDICTED: anaphase-promoting complex subunit 8-like [Cicer arietinum] gi|502078646|ref|XP_004486012.1| chr0 146111575 146118900 +
2 domain predictions
1 GO term
Lj0g3v0308609.1
n.a. PREDICTED: general transcription factor 3C polypeptide 3-like [Cicer arietinum] gi|502133758|ref|XP_004501881.1| chr0 161151140 161161698 +
2 domain predictions
1 GO term
Lj0g3v0319309.1
n.a. PREDICTED: peroxisome biogenesis protein 5-like [Glycine max] gi|356510270|ref|XP_003523862.1| chr0 166696199 166709838 +
2 domain predictions
1 GO term
Lj0g3v0331449.1
n.a. PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein beta-like, partial [Cucumis sativus] gi|449533572|ref|XP_004173748.1| chr0 173238994 173239875 +
2 domain predictions
1 GO term
Lj0g3v0337989.1
n.a. PREDICTED: tetratricopeptide repeat protein 13-like [Glycine max] gi|356565517|ref|XP_003550986.1| chr0 177038865 177046353 +
2 domain predictions
1 GO term
Lj0g3v0340859.1
n.a. PREDICTED: crooked neck-like protein 1-like isoform X1 [Cicer arietinum] gi|502159770|ref|XP_004511524.1| chr0 178529702 178531039 -
2 domain predictions
1 GO term
Lj0g3v0353049.1
n.a. PREDICTED: tetratricopeptide repeat protein 7B-like [Glycine max] gi|356560871|ref|XP_003548710.1| chr0 185747993 185753024 +
2 domain predictions
1 GO term
Lj0g3v0353659.1
n.a. PREDICTED: RNA polymerase II-associated protein 3-like isoform X5 [Cicer arietinum] gi|502116957|ref|XP_004495651.1| chr0 186170964 186173205 -
2 domain predictions
1 GO term
Lj0g3v0357009.1
n.a. kinesin light chain-like protein [Phaseolus vulgaris] gi|270342119|gb|ACZ74702.1| chr0 187980385 187982856 +
2 domain predictions
1 GO term
Lj0g3v0359539.1
n.a. kinesin light chain-like protein [Arabidopsis thaliana] gi|15241687|ref|NP_195833.1| chr0 189272424 189276927 +
2 domain predictions
1 GO term
Lj0g3v0360359.1
n.a. Tetratricopeptide repeat-like superfamily protein [Theobroma cacao] gi|508786510|gb|EOY33766.1| chr0 189788349 189791686 -
2 domain predictions
1 GO term
Lj1g3v0001050.1
n.a. PREDICTED: tetratricopeptide repeat protein 37-like isoform X1 [Cicer arietinum] gi|502158779|ref|XP_004511280.1| chr1 22910 38176 -
2 domain predictions
1 GO term
Lj1g3v0001050.2
n.a. PREDICTED: tetratricopeptide repeat protein 37-like isoform X1 [Cicer arietinum] gi|502158779|ref|XP_004511280.1| chr1 22910 38176 -
2 domain predictions
1 GO term
Lj1g3v0001050.3
n.a. PREDICTED: tetratricopeptide repeat protein 37-like isoform X1 [Cicer arietinum] gi|502158779|ref|XP_004511280.1| chr1 28528 38176 -
2 domain predictions
1 GO term
Lj1g3v0295770.1
n.a. PREDICTED: tetratricopeptide repeat protein 37-like [Glycine max] gi|356507317|ref|XP_003522414.1| chr1 3435633 3441139 -
2 domain predictions
1 GO term
Lj1g3v0295770.2
n.a. PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] gi|356516597|ref|XP_003526980.1| chr1 3435633 3441185 -
2 domain predictions
1 GO term
Lj1g3v0985630.1
n.a. PREDICTED: kinesin light chain 4-like isoform X2 [Cicer arietinum] gi|502136407|ref|XP_004502675.1| chr1 12593935 12598228 -
2 domain predictions
1 GO term
Lj1g3v1092730.1
n.a. SET and MYND domain-containing protein [Medicago truncatula] gi|357464329|ref|XP_003602446.1| chr1 13841994 13855383 +
2 domain predictions
1 GO term
Lj1g3v1221310.1
n.a. Tetratricopeptide repeat-like superfamily protein isoform 1 [Theobroma cacao] gi|508700415|gb|EOX92311.1| chr1 14886038 14890529 -
2 domain predictions
1 GO term
Lj1g3v1221310.2
n.a. Tetratricopeptide repeat-like superfamily protein isoform 1 [Theobroma cacao] gi|508700415|gb|EOX92311.1| chr1 14886647 14890529 -
2 domain predictions
1 GO term
Lj1g3v1221310.3
n.a. Tetratricopeptide repeat-like superfamily protein isoform 2 [Theobroma cacao] gi|508700416|gb|EOX92312.1| chr1 14887871 14890529 -
2 domain predictions
1 GO term
Lj1g3v1290390.1
n.a. PREDICTED: protein TONSOKU-like [Glycine max] gi|356528540|ref|XP_003532859.1| chr1 15404600 15413979 -
2 domain predictions
1 GO term
Lj1g3v1318090.1
n.a. PREDICTED: tetratricopeptide repeat protein 1-like [Cicer arietinum] gi|502124508|ref|XP_004498557.1| chr1 15905000 15914876 -
2 domain predictions
1 GO term
Lj1g3v1384110.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Glycine max] gi|356521481|ref|XP_003529384.1| chr1 16802248 16806591 -
2 domain predictions
1 GO term
Lj1g3v1385260.1
n.a. PREDICTED: tetratricopeptide repeat protein 27 homolog [Cicer arietinum] gi|502137243|ref|XP_004503019.1| chr1 16871404 16882259 -
2 domain predictions
1 GO term
Lj1g3v1548780.1
n.a. Tetratricopeptide repeat-like superfamily protein [Theobroma cacao] gi|508723577|gb|EOY15474.1| chr1 18527616 18529300 -
2 domain predictions
1 GO term
Lj1g3v1719010.1
n.a. Tetratricopeptide repeat protein [Medicago truncatula] gi|358345504|ref|XP_003636817.1| chr1 20176054 20179008 +
2 domain predictions
1 GO term
Lj1g3v1732290.1
n.a. PREDICTED: tetratricopeptide repeat protein 7B-like [Glycine max] gi|356509775|ref|XP_003523621.1| chr1 20321268 20325520 +
2 domain predictions
1 GO term