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LotjaGi1g1v0251100.2

Overview

Field Value
Gene ID LotjaGi1g1v0251100
Transcript ID LotjaGi1g1v0251100.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Serine/threonine protein phosphatase 7 long form isogeny; TAIR: AT1G48120.1 serine/threonine-protein phosphatase 7 long form-like protein; Swiss-Prot: sp|Q9LNG5|PPP7L_ARATH Serine/threonine-protein phosphatase 7 long form homolog; TrEMBL-Plants: tr|V7B7N1|V7B7N1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0251100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:60278050..60281459) extracted from Lotus japonicus Gifu genome v1.2.

CTCATTTCACTTTTTCATTTTTCTTCCTTCTTCTGCAGACCCATTCTCTACTTCTTCTTCTATATATGTTATGCCAGTCC TGATATATACACACCTTCTACAGTAAACCTCTCCATTTCCACCTTGTCCACGTAAGCATCTGTTGAGCATTTTCCATGTC AGCTTACAGGTTGGATGAGAGAGGTAAAATCAAGTTGGATGAGAGAGATTGGAAAATTGAAAGGGGGCAAACGAAATTTT GCTTGCAGCCTCTCTCTCATTAGACAGCAGCCTCTCTCTCATCTTCACCTCTAGGGTTTTCTTGCTCACCCACCGTCTCC CCCACCATTTTGCTCAGCCACCGTCGCCCCCAATAAAGCAAGTCCCCTCCGCTCGGATCGGTCTTCCACGTTGTCGCTGG GTTCGGTCCTCCCTCGTCCCATCCGCGGCTCGCCCTCACTCTCTCTTTCCCTAGTTCAGAACCACCCTTTCTCCCCCTTG AGAAACAAGGTATGATGGTGCTTGTTATTGTATCTATTTCCAATCAAAATCAACGTCTGGGCCTGATTATTTTCCCCCAA ATGCATGTATTTGTTGAGAAATTTGATTTTGGTGGATTGATATGGGTTTAGAGAACCTCCCCTGAATAATTATGATATGG GTTTAGAGAACCTCCCCTGAATAAATTTTCTGTTGTATTGAATTAGTTTCATTTGGGTGATGTAAAATTTTCTTTTTATT TCTTGTGGGTATTTTTCTTTGGGTGAATTAGCTGGATTGATTTAGTTGTATTGATATGGGTTTAGAGAACCTCCCCTGCA CATTTGGGTGCTGTTTTTTTTTTGTACCCATGGATTTGAACATTCCTCATTACTTTCTGGATCAATAAGTTTGTGTACAT GATATCCATGCGCATCTATCACATGTTCTGATAGAGCTGCTACTGTATCTAGGCCAGAGAAACCTCCTATCAAGCATGTA TATGTGAGGCACCAAGCTGGCACTAGTGAGGTTAACTAACTGTAGTTGACAGTTAGTGTTAAATAAAAGAGGATTAACTA ACTGCAGTTAATGGTTAGGGTTAGGATATACTATAAATTGGAGGATTAACTTAACTCCTCAGTTAGCATTCTTCTGGTAG ATAGAAATTGGTTAGAACTGATTGTGGAATCAGTTAGGGGTTTCCTTCCTTCCAGAAGTTTCTTGTTCATTCTCTGTTTT CAGTTTCTCTCAAACTAGAATCTCCATTGTTACTGGTTGAGAGCTTTGAGTCTATTGTATAGTGATTTTGTGTGAAATTG CATTACCAGTTCTAACATGTTCTGTGTCCATTAAGAGGCACTGATTTTGATTCCGCTTGTAAAATGCTCCTAGTATTTTC TTCAGAAACCATGTTTGGCACATGTGCTTTCTGAGATTCCTTATGGTGAAGACTCATACATGTCTCAATTTGCTGTTGTT CCTCCTCCCACACCAAGCCCAGCTGCATCCACTCACCCATTTATGCAAAATATGGTGAGTTTTGCTTTTGATTGGGTTTT CTCTACCATCCTGCTTCAATTAATTTTTGTTTTGTCCTCATTCAACATTCCTTTGTGTTTCCGTGGAGTTTGTTAGTTTT TAAAATAAGTCTCGTGGTACTTTCTTATTTTGCTTGAAAGTACACTTATATTTCACAAAACATGAACACCAAAATTGAAC ATGCATTTTCATTTTTTTTCCAGGTACGTTTTAGGCACACTTGTAAGACAAAGTGGCTTGTTAAGGTGAATAAGCATCTA ACAGATGCCCAAAGGTCTCGAATTCAGAGAACCCCGTTTCACTCATTAATGGAAATGCCCGAAAAATTACGTACCAATTG CATATTGTTGTCTAACTTAGAGAGTCGGTGGGAGGAGAACCGTTTCGGTTTTAAAATACAAGATAATGTAGTGCCTTTTA CTCCACTAGATGTATGTTTCTCACTAGGATTGCGTCTAGTTGGACTAAATGTGAATTACAATGGAGATGAAGATGCTGAA TGCCATACCAAAGGTTTATTTAAGGGGGAAGAAATAACAGTTAAGACAATAGTTAAGCAACTAAGGAGGCATAAAAGTGA TGACAAGGTTGATGACTTTTGTAGGCTATATATCCTTCTTGTGTTTGCAACGTTTTATTTCCCGCAGAGTTCAACCAGTT GTTTGTTGCGAATGTTAGATAATCTAAATTCATTGCAAGAATATAGTTGGGGTGTTGCTGTTTATGATACCTTGGTTCTA AGCTTGAGTCGTTGTGCAAAATGCTTGAATAAGTCAAAGAATAAATCAGTTGTCAGGATAACCGGTTGTGCAGCCATATT ACAGGTACTTTATAGTATGTTTATTATTATTGCTAAAATTTGTTATGGTTGTTTAAAATATTTTATTTGCATTTCTTCAT TTAACTAAATGATTTTCTGGTGCTGATATAGATTTGGGCTTTGGAGCACATGTTCTTGCGTGGAAGACCTATATGTACTG GTACCATACGGTCATTTCCGCGATTTTTACGTTGGCAAAATGTTGCAATGCGCAAGGATAAAATACTGAAAGCATTTGAA GACAATCGTGTAAGAATGCAATTCAGTAAATTTTAAAATTATCGGGGTAATACTATAAGAAATATTTGATTTTGTATATT CATTGACAGGTACTTGAGAAGTTGGCTGCCACAAGTGAAGAGCTACAGTATGATGTTGTGATGGAAGCAATGCAAAAGGC ACCAAGCGGGTTTCCCCATAGGCACAAGCTGAATTTTTATGCGGAGAGAGAGAGACATGTAAACATCAGGTCATAGTTGC ACACAAGGAGATTAAGGAAATGATATCTTTTATTCAAAATGATTTCATGATGATTAAGCAAGTTCTTCAACCAACGGTTG AGTCAAGCCCACAAACTATTAATTACACATGTGAGGATGAAGCAAACACATGGTGTGACGATAATCGTAGTTCGGCCAAA GATCATGATGAATGCCACATTGAGGAACAAAATCTGCAAGTAATATCCAACATATACACACGTCTTAAGGATGAACCAAG AAAGCGCATAGAAAGTGCAGTAACTAGATCACCTTGGACTACATATCAGAGGAGACGCAACAAGGGCAAGGAGGTTAAAG CTGGAAACTTGTAACGGTTTTTGTTAAGTTCTTTATTGAAGAGAATGTTTTAAGTAGAAAATCTTTGTTAATTAATGGGG TAACTTTGATGTACTATGTAGATGCACCATCTATGGTGGTTTTGTTATGTCCATTGAGAATAGGAGTCCTAATCCTATTC ATGTGTTTTAGACATATATTTGTAGCCTTTATTAAGAGCAACTACCCGCAAAGTCAAACATTACTACCCAAGTATATGTA ATTGATACTTTGTTATGTGCCACTGAGATTACAGGCTCTTAATCTACTTC 

CDS sequence (LotjaGi1g1v0251100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTCAATTTGCTGTTGTTCCTCCTCCCACACCAAGCCCAGCTGCATCCACTCACCCATTTATGCAAAATATGGTACG TTTTAGGCACACTTGTAAGACAAAGTGGCTTGTTAAGGTGAATAAGCATCTAACAGATGCCCAAAGGTCTCGAATTCAGA GAACCCCGTTTCACTCATTAATGGAAATGCCCGAAAAATTACGTACCAATTGCATATTGTTGTCTAACTTAGAGAGTCGG TGGGAGGAGAACCGTTTCGGTTTTAAAATACAAGATAATGTAGTGCCTTTTACTCCACTAGATGTATGTTTCTCACTAGG ATTGCGTCTAGTTGGACTAAATGTGAATTACAATGGAGATGAAGATGCTGAATGCCATACCAAAGGTTTATTTAAGGGGG AAGAAATAACAGTTAAGACAATAGTTAAGCAACTAAGGAGGCATAAAAGTGATGACAAGGTTGATGACTTTTGTAGGCTA TATATCCTTCTTGTGTTTGCAACGTTTTATTTCCCGCAGAGTTCAACCAGTTGTTTGTTGCGAATGTTAGATAATCTAAA TTCATTGCAAGAATATAGTTGGGGTGTTGCTGTTTATGATACCTTGGTTCTAAGCTTGAGTCGTTGTGCAAAATGCTTGA ATAAGTCAAAGAATAAATCAGTTGTCAGGATAACCGGTTGTGCAGCCATATTACAGATTTGGGCTTTGGAGCACATGTTC TTGCGTGGAAGACCTATATGTACTGGTACCATACGGTCATTTCCGCGATTTTTACGTTGGCAAAATGTTGCAATGCGCAA GGATAAAATACTGAAAGCATTTGAAGACAATCGTGTACTTGAGAAGTTGGCTGCCACAAGTGAAGAGCTACAGTATGATG TTGTGATGGAAGCAATGCAAAAGGCACCAAGCGGGTTTCCCCATAGGCACAAGCTGAATTTTTATGCGGAGAGAGAGAGA CATGTAAACATCAGGTCATAG 

Protein sequence (LotjaGi1g1v0251100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSQFAVVPPPTPSPAASTHPFMQNMVRFRHTCKTKWLVKVNKHLTDAQRSRIQRTPFHSLMEMPEKLRTNCILLSNLESR WEENRFGFKIQDNVVPFTPLDVCFSLGLRLVGLNVNYNGDEDAECHTKGLFKGEEITVKTIVKQLRRHKSDDKVDDFCRL YILLVFATFYFPQSSTSCLLRMLDNLNSLQEYSWGVAVYDTLVLSLSRCAKCLNKSKNKSVVRITGCAAILQIWALEHMF LRGRPICTGTIRSFPRFLRWQNVAMRKDKILKAFEDNRVLEKLAATSEELQYDVVMEAMQKAPSGFPHRHKLNFYAERER HVNIRS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 155 155 -
PANTHER 25 301 277 5.3E-46
PANTHER 25 301 277 5.3E-46
Pfam 67 275 209 4.6E-10
Phobius 156 172 17 -
Phobius 173 191 19 -
Phobius 192 209 18 -
Phobius 210 220 11 -
Phobius 221 241 21 -
Phobius 242 326 85 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0251100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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