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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0261300 |
Transcript ID | LotjaGi1g1v0261300.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RING/U-box superfamily protein, putative; TAIR: AT1G68070.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like; TrEMBL-Plants: tr|A0A1J7H5C8|A0A1J7H5C8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0261300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:63954705..63960526) extracted from Lotus japonicus Gifu genome v1.2.
TTCAAAAGGTAACTTTTTAGATGCAAAAGCATTTCTGGTGCCTGCCTCCTAAAGAGCTGTTGACTTCATTACTATCTATT AATTCATGGAGAGCTGATCGGAGATTGTTGGCTGTTCCTGAAGATATTGAGAGAGTGCTGGTTGGTGTTGAGGCTTACTA GAGCATCAGAAGGCATAATTTTGACACTGGTTTATCCTTCTTTGAGAGTGATGATGAAATTGAGAGAGATGGTAACAATA CTTTTTCATGAGTTCTTGGTCTGTTCCTTGAGCAACATATCATTATCAGTTTCTGAGCTGTATATGTCATTATGTGATGA TATTTCCCCACATACATATGTTTGTTTTTCGTTGTGTTAGGATGATATTTCCCCACATATGAGATTCGATTTTCATACAT TAGTTGACATGTTGTTTCATGCTACAATATTGAATGCACAGTTGTTGGGCCAGCATCTTTTTTGTTAGCTTAACCATTTA AATAACTAGTTCTGTGCTTCTGTCTTGAAGTTGGGATGTTTTAAATCTTTATGTGGAGGATAATATAAATACACAATCCA GATTCAGTTCTGTATTCTGTCATCCTGAATTTTGGACAATTAGTTACCTAGTTTTTTTAATGTTAAGCTCATGATGCGCA TTCACTTTCAATTTTCTTCCTTTGTCTTCAGGAGCCTGTGAAGACCAAGCATCCTCAACTGCACTATGAGTCAAAATTGT ATATGCTTCTTCAAGAGGGTAGTAAGTTTTTATGCTTTTTCTCCCTCTTCCCAATTTATACACCTTCATGTTCTTTCTTG TAGGCAAGACATGTGTTTGTAGCTTTACAGTCATAAAGTAAACTTGTCTTAAAAATTTGTTCATTTGTTAATTTTTATTT GTTGAAGCTGGGGTGCCCCATATAAAATGGTATGGAGTTGAGGGCAACTACAATGTCATGGTTATTGACCTTCTTGGACC AAGTCTTGAAGACTTATTTAACTATTGCAATAGGAAATTCTCTCTGAAAACAGTCCTGATGCTAGCTGATCAGCTAGTAT GACTTTAATTTCAAAAAAACTATGCTTGTAACAGAAAGCTACTGTGTTCTCACACTTCCCCCAATTTTATATGCCTTTGT GTATAACAGAAAGTTGAGTACATGCATTCCTGGAGCTTTCTGCACTGTGATATAAAGCCTGATAACTTCTTAATGGATTT AGGACGTAAGGCAAATCAGGTATCTTGTGTATCCGGAACTAGCTCTTTTCTGGTACGACCAGTGTTTCAATCTTCTATTG ATAATGGTACTGGCTTGATAAAACTTATGGGAGTTTATTCTGTTGCCCTCAACCAGAGCCTGGGTTGCAGCTGTGGCCAA CAAACTAAGAGGTAAAGGCATTAGCTTGTTTACATATTTTTTACATCATATTATTTGATTGTGAAACGCAACACTTCATA AATTCACAATTTCTTATGTTTTTTTACATCATATTACATAGTTGATCTGTAGATTGTAAGATATAAAAGAAGTACTATGA AAATAATTGGTATACAGGTTTGTTTACAACTCAATCTTGCTCGATTGATAGGTGGTTCAGAGTTGAGATGAAATTGCACT AGATTTACTTCTATTTAGCATTTAGATGTTACCATCATATTACATAACCTGTGCTTTTTTGTTGTTGTTATCTTGTTACA AAATTCATTGATTAGCACAGACTTCTATGTGGGAAGAGTGCAATAGAGCTAGTCTTTAAACCATGTCACATTACATTGGT AATTTGCAATAGAGCTTTATTAATTCATATTATGTGCATTTAAAATTAATATTTGTAGGATGTTTAGAAAATCACTTTAA ATGGTTAAAAAGTATACTCCACAATTAAATGAGGTTAAAAATGTCCCTAGAATAAACTCTGGTAGCCAAGGGAGGGTTAA GGGAGGCTTAAAACTGTAAATAATCTCTTGCATGTAAGGGAGTTTAAAACTCCCGTTAAAAAAAAGCTTGCGGATAAGGG AGGTTTAAAACCCCCGCAAAAAACCGCCGCTAAATCCATATGCAGTACCAGGGTTTGCTAAAAAACGCCGCTAATAATTT GTGGCGAGTGTAACTTTGGGATTTTTCAAAACCCCCTCTAAGTAACTCGCGGGGCTAAGTATAAAAAAAAACCCCACTAA ATAACGTTTTTTTTTTGTAGTGCATGTAGAGCAATACGTTTCAAAAGATTGTAAACTGCATCAGCAGTGCCAGGACGGAT TACAGAGCTCTAATCCAGATTCACTTATCACGGGTAATTTGCTAAATGAGTATACTGCTTTTAGTTTACATCCTTTGGCT TAAATATGTTTTTATTCCTTATAATATACCCTCTTTCCATTTTTAGTCTTTTTAAAAAAAAAAGTTTTCCATCCTCAACA TATCAAACGATATGTTTTTTTAGTCATTGACATCAAATTTTCCACAAAAGGTTACAATAAAAATAACACCAAAAAGAAAA CCTATGAGGCCCAACAAGTGTAAGTCAACAACTAAGAAGAGCAAGGTACCTGTTGGTGGTGGTGATGAAGTTGTAGTGCA TAAGATTGATGATGATGACCTGAATGCTATCGATTGGCTCATGAAGGATGTGAGCTGTGTGGGAGTCATTCATTCTCTTA GAGAAGCTAATGGGGAGGCTGATGAACTAGCTAAATCAGGCTGCGATCGAGCTAATCCTCTGTGTGAGAAACTATTGTGA TGTGATACTTATTTTGGGCCCTCTGGTTTCATGTTATTGCTCCCTCATTTCTGCTTCTGGCTGTCATGAAAAGTGGTGCT CTAGCAATAGTTCGCGGCAAGCTTCATCCTCATTGTGCACTCGCAAGCCTTGCTGATGTGGAGCCATGTTTATTCCTGTG CTGTTTGATTCACTAATCTGTTATTTCTTTTATTTGCTTTGCTGCTCTTTTTTTTTTTGTTTTTACTTTCTATTCTTCTG TTCTTGGCCCTTGCGTTCCTCTTGTTAGGATCCTTGGCGCTGCCCTGCTTCTTTTTCCTGTATAGCTTGGTGCTTTTGTC TTCTATTTAATTCCAATAAAGTGCTTTTGCTTCCAAAAAAAAAAGATTGATGATGATGACTATCAAACTGAAGAACTTCT TAGTGATGCATGTGATGAATACAATGATGATTCTTCTACACAAAGGTTTGAGAGGTTTAAGGAAGAAGATATGATACAAA ATCTCATAGACGGAAGGGGTTCTTGGAACTGCTTCGGGATGAAAAACTTAACGTCAATGATTAAAAACAGAACGTTTCAT ATGTTGGGGATGGAAAATGGAAAAAAAAGTAAACGGACTAAAAACGAAAATAAAATAAGGACGAAAAACATATTTTAGCC AAATCATTTTTACTTATTTGAATTCATATGTCCATATTCTACTAAAAAAAGGAATTTTTATTCGAATAAGTTGACTTGTA AATTGTAATATAAATATTTCTCTCTCCTAATCTACATAGTGCATCTTCATAAAAAAAAAAAAAGAGAAAAAGATGATGCA CCGACAGTGTAAAGTTTTTTTACATCGTCAATCAATCATCAGATTTCAAGGATGTGTCACGTCAATTAATGATATTAAAT AAAAGGAGAGATTCTCACATCCTTAAAATCTGATTGGTTGACGGTGTAAAAAAGCTTTACACCGTGCATAGAAATTAAAC TCAAAAAAAAAAACTTATTAGTGCATTGAGATTGTTTTTTTTCTGTTACATTTTTTTTGGGCTTAAATGCACTTTTGGAC CCTCATGTTTTAACTTTTTGCGATTGTCAACCCTCATATTTTTTTTCTACGAATGGGAACCCTATTCTTTTAAAACGCTA CACTGTTTATCCTTCCGTCCAAATCCGTCAAAAACTTGATGGAACACGCTGATATGACCTTCCACGTGGATAAAAGGGGG ATTTAAAAAAATGGCTTAAATGCACTTTTGGACCCTCAAGTTTACATTTTTTGCGATTGTTGACCCTGATCTTATTTTTA GTTTGAATGGAGACCCTAATCTTTTAAAACATTGCACCGTTTACCCTTCCGTCAGAAGGCCAGGTAAGTGAGTTCCGTCA AGTTTTTGACGGATTTAGACGAAAGGGTAAACGGTGCAACATTTTGAAAGATTAGGGTCTCTACTCGTAGAAAAATAAGA TCAGAGTCAACAATCGCAAAAAATATAAACTTGGGGTCCAAAAGTGCATTTTAGCCCTTTTTTTATCTGATGATTAAGGT GTTTTTAGTTTACTCTTTTGGATTTTAAAACTCCTTTTTAATTTATTTTAATTCCTATACAAGCTCTGGAAAGTTGACAC ATGTCAAAACTGCCCCTCTAGATTTAGATTTAGATTTTTTTTAAAAGGAGATTTATATATATATATATATATATATATAG ATTTAATTGCTAAGAAAAACTATTGAAAGATAAAAGCTGATTAATGACTAATGAGAGTATCAGACACATGTCTTTTTTTT AAAAGGTACCAGACACCTGTCGCTCCTCAGGATTTGTTGCATAGCAAGTCCAATAAAACCCCTTTTAAAAAAAGTCCAAT AAAATTAAGGATAATTATGAGTTAGGCAAATATGAATTTCAATTATTAGTTTTAAAAAAAAAACGAATTGCAATTAATTT TCAAATTGAATACGCGTTTTTTCTTCTTAATGTTGTGATAATAACAACGGTAAAGCCCCTAAAAAAACCAACGGTAAAAT ATCGATCAACATCTTGAACAAATCTTTTATTTTTAAATGACATCTTGAACAAATCTTTAATGATTTGATTTTGATATCAT TAGATATTTTGTTTCTTTAAAAAAATGATATTCGCTTGTCATATTTCAAGTTAAACGATTAGTGAGTGTGCAGATTAAGT CTCAATTTACTCCTTGTGCAAGGATCAAAGTTGCCATTACTGTGTTCCCTTTTCTGATCAAGAAGTGCATAACAATTCAT TCTTGAAGAGTAAGATCGAGTCATGTCGATGATGATAGATACTTATTTCACATGGGAACTTCGTCGTTCCCGAATGGATG AAGATGACCGAGTGCTTGTTCGAACTCTGCAGCAAGATTATGTTGCCCTTGGAGATTATTTGTGCATGGAAGTTCGCATT AAACGTGAACTGTACAATAGGCTTTATCCAGAGAGTGAGAGCTCCATTGTGGTATCTTGGGATGAATTACTAAGCGGTGA TCTATCAAGCATCGAAAGAAACTTGTTTGATCATCATATCATTCCCCCTGAGTTCATTCCATCACTGGCGTCAGATGTGG TATCACGTGCAAGCGAATTGGTACAAGATTGTCCCCTGAATTCCAATCATGAAAGGCCACACAGGGTCAAATTTGTTTTG AATATTACTGCTCCTGATGAGTTATTTAAGTTCTGGGAGTCCTGTATGGAAGAGGAAGAAAGTGAAGAGGAAGAAAGTGA AGAACCCCATCACCACAAGAGAGTGAGGGTGGAAGAAGGAGAGGAAGACAGTGAAGAACCCCACCAAAAGAAAGTGAAGG TAGAAGAAGAAGATGCTGACGCAGAAGGCTGTTGTATTTGTCTAACAGAGTATGAAGATGGTGTGCAGGTTCTACAAATG CCTTGCAAGCATCTGTATCATGAAGAGTGCATTGTTCAATGGCTAGAAGAAAGTCCAACTTGTCCTTTGTGTCGCTCTAC CATGCCCCTCACTGACTGATTAGAAATTTGTATTTGAATTCAAGTAATTTGTCTTTAAATTCTTAGACTTCAATAGCTGT TAGAGATTGTTAATAATAATTTCTACTTTTCAATACATTTCAAACTATTTTGGTTTCTGCAA
CDS sequence (LotjaGi1g1v0261300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATGATGATAGATACTTATTTCACATGGGAACTTCGTCGTTCCCGAATGGATGAAGATGACCGAGTGCTTGTTCG AACTCTGCAGCAAGATTATGTTGCCCTTGGAGATTATTTGTGCATGGAAGTTCGCATTAAACGTGAACTGTACAATAGGC TTTATCCAGAGAGTGAGAGCTCCATTGTGGTATCTTGGGATGAATTACTAAGCGGTGATCTATCAAGCATCGAAAGAAAC TTGTTTGATCATCATATCATTCCCCCTGAGTTCATTCCATCACTGGCGTCAGATGTGGTATCACGTGCAAGCGAATTGGT ACAAGATTGTCCCCTGAATTCCAATCATGAAAGGCCACACAGGGTCAAATTTGTTTTGAATATTACTGCTCCTGATGAGT TATTTAAGTTCTGGGAGTCCTGTATGGAAGAGGAAGAAAGTGAAGAGGAAGAAAGTGAAGAACCCCATCACCACAAGAGA GTGAGGGTGGAAGAAGGAGAGGAAGACAGTGAAGAACCCCACCAAAAGAAAGTGAAGGTAGAAGAAGAAGATGCTGACGC AGAAGGCTGTTGTATTTGTCTAACAGAGTATGAAGATGGTGTGCAGGTTCTACAAATGCCTTGCAAGCATCTGTATCATG AAGAGTGCATTGTTCAATGGCTAGAAGAAAGTCCAACTTGTCCTTTGTGTCGCTCTACCATGCCCCTCACTGACTGA
Protein sequence (LotjaGi1g1v0261300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMMIDTYFTWELRRSRMDEDDRVLVRTLQQDYVALGDYLCMEVRIKRELYNRLYPESESSIVVSWDELLSGDLSSIERN LFDHHIIPPEFIPSLASDVVSRASELVQDCPLNSNHERPHRVKFVLNITAPDELFKFWESCMEEEESEEEESEEPHHHKR VRVEEGEEDSEEPHQKKVKVEEEDADAEGCCICLTEYEDGVQVLQMPCKHLYHEECIVQWLEESPTCPLCRSTMPLTD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 116 | 236 | 121 | 3.3E-24 | – | |
PANTHER | 116 | 236 | 121 | 3.3E-24 | – | |
MobiDBLite | 145 | 181 | 37 | - | – | |
MobiDBLite | 152 | 181 | 30 | - | – | |
Gene3D | 166 | 235 | 70 | 8.2E-20 | ||
SUPERFAMILY | 189 | 235 | 47 | 8.97E-19 | – | |
CDD | 190 | 231 | 42 | 3.10368E-17 | – | |
ProSiteProfiles | 190 | 231 | 42 | 12.902 | ||
Pfam | 190 | 231 | 42 | 7.1E-14 | ||
SMART | 190 | 230 | 41 | 1.7E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0261300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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