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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0264500 |
| Transcript ID | LotjaGi1g1v0264500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal transporter, putative; TAIR: AT1G15960.1 NRAMP metal ion transporter 6; Swiss-Prot: sp|Q8H4H5|NRAM5_ORYSJ Metal transporter Nramp5; TrEMBL-Plants: tr|G7J4Z1|G7J4Z1_MEDTR NRAMP metal ion transporter 6; Found in the gene: LotjaGi1g1v0264500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:64711837..64717499) extracted from Lotus japonicus Gifu genome v1.2.
CCTCATATATCACATTTCTCATTTCACTTTCTTGTAATGTAAACATCTTTTTCTTTTCAATAATGAAAAATCAAAGCTCA TCTCAAATTGAATGGACTAGTGTCACAGACTTACAATTGAATATTTTAATACATAATCTGCACATCAAAATCATGAATTG AGTAAGCTCTTCCCTGCTGCATATAGTCTGCATACATTAAAGATATAGAGAGACTCTTGCCGGTTTGACTTGAGTAAATT TCATGGAGATGGAACATGAAGTACAAAGAAGTAGTGATTTAAATATGTTTTTGTTAATTATAAATAAATACACACACTTT TAATTCACTGAAGCCCACTAGTCTTGCCCATACCATATAATACAAACAACTCAATCAGAGGACGAGCCAATGTGAGATGC AAAGAAAGAAAGAGTGACTGATCGATGATGGAGCAAGTGAACGATGCAAATGGACCACATAATCATCAATACTCCTCAAA TCACGAGGTATTTTTCCTTCTTTCTCTATGTGGGTTTCTTTTTTAATGTTTTTTTTTTTCCATTCAAGTTCTTGAGTCAG GTGTAACCCACTTGATTTAAAGTTTTCCAGCTAGTTTTAGCAATTCAATGACTCTTAGCTTGATCCATTTAATATGTGTA TATTAATATATGTGTTTATAAACAACCAACTATATATCTCACAAAGGCTTATCAAAAAATATATCTCACAAAGTTTAAGC TTTCTTGATATCATGATTTCTAACAGAAATTAACTTATGCAAAATGACACAGAAACCATGGAGAAAGTTCTTGACACATG TAGGTCCTGGTTTCCTGGTCTCCTTGGCTTACCTTGATCCTGGGAACAGTAACTCTCTCTCTCTCTCTCTCTCTCTCTTC TGTATCTCTTTATATATATTCGTCTTGATCACTCTCTTGCACGTGCTTAATCGCTAAGTTATTTTACATTTTTGCAGTGG AAACTGATATGCAAGCTGGAGCTAACCACAGATATGAGGTATAGTAATTGACAAATAAACCAATAAAACAAATCAAACCA TTTGAATAAATAGATGCACACCAAAAATACTACTGTATTTTTCTTTTGTCAACCCAAAATGCTACTTTATTTAAGTTTTT GTTACTTGGAAGCGAGTGTAGGTTGGGTTACTTGTGAGTGTAGTGTGGTCCCAAATGTTTAAAACTATTGAACTTATCAC ATCTAACCTTATGTACCATTGTTGTCTCCTATGAAGTATCCAATGGGACTTTGTTTGTTTCAAAATGTAACTAGACTAAT TAAGTTAAACTTATTTGGTTTGCACTTGTATTCAAGGGTAATTTTAAAGACCATCTATGAACATGTTCTCTTTTCTGTCT AAATTTGAGTCTCGGTAACACATGACTAATTATCATATTAGTGGCTATTGTTTTTTTGAAATTTACTCTTTATTGATTAA TAAGCGCAGGCTCTGCAAAGAGGGATACAAGGGAAGTAGCATCTTATCATATTAGTTGTTTTTTTGAATATTAATTTATC TTTTTTCTCTCTCTTCATTGAGCCCTTTTCCTTGTAACTTTTATTTTTCAGGCTTTTTTCTTTCTTTTTAAATCATAGGT TGAGGTCTTTTGGTGTTTTTTTTTGTCAATAGTTCTTTTGGGTTTTGATAGTGCTTGTTGGCCACTTGGCCTAGGCAGAA ATGGATCTTTATATCCGAGAGTGTGTTGGGTTAGATGTGATAGCTTAGTCCAAAATGTGTAAGTAGTTTTTTCTAAATAA TCTGTTTCAGTTTTTGTTAAATAATCATTTTTTAAAAAAGTGGAAATAATATGGGTTGGGTATGGGAGGTCCAGGGATCG ATTCCTGGCGGGTGCAATTTATCTTTCCGATTTTTTTTTTAAAAACTTCTTTTTTAATTAAAAATAATTTTTTTTATATA AAAAACCTGAAACAAACGCACTCATTATGGTGTTCCTGGTGTTCAGCTGCTCTGGTTGGTACTCATTGGACTGATATTTG CGCTTATAATTCAGTCATTGGCTGCAAATCTCGGTGTAATCACTGGTAAGATCCAAAACAACACAGTAATGCATGAAAAA TGTTCAAATAACACAAAATTCACATATGTTATATATGCATGTATGATTGTATATGTTATTTGTTTGTTATTTTCTTTGCG AGAATATTATTAATGTTATTTGAATTTGGCAGGGAAACACCTTTCAGAAATATGTAAAGCAGAGTACCCATTATTTGTTA AGTACTGCTTGTGGTTATTAGCAGAGGTTGCTGTCATAGCTGCAGACATACCTGAAGGTACTTATTTGTTTTCAATTTTT TTGTTTTTTGTTTTTTCCCTTTCAATCATAATCATTCAATTCAACAATAAAATACACTTTGTATTTTAATTTTATCCAAA CGTGATGAATTGTTGCAGTGATTGGCACAGCCTTTGCACTTAACATACTCTTCCACATACCATTATGGGTAGGAGTTCTG ATGACTGGCTGCAGCACTCTCTTGCTTCTGAGTCTGCAGAGATTTGGGGTAATTTAGCTTTTTGTAATACTTATGAAATA TGAACAATATAAAATCTCATTTAAGACATCATAATTCAGTAGTAATGTTTAGTTTTCTCTAAATCGTACACGGTTAGTTG ATTCAAGGGATATATGTTTGATTTTCCTTAAGTTAGGTTTTCAATTCGAGTCTTGTGTATGGAAAAACCTCGCTGTTCAT GTCATCAACCAAGACTAGATGTCCAGCTATTTTCACTATAATGTTGAACATGTAAATTACAAATTCACCAAGTCATGTTC ATCGTTGATTATGATTGTAGAGGTGTCATAGACTTCTACCTAATGACATGTAAAATTTTCAATATATTCTTAACAATTGA ATATAATATTGTGTCTTAGGCTCTTAGCTGCTTAAAATGGATAATTGCTCTTTGAGTAGTTTTTAAACAATGAGAAGAAA AAGTGGGTTTCATGGTTAAACTAAAAACCGCATTTTCAAGTTGCACATTAACTTTCTTTATCCAGTGTCTATATTTTGTT AACTGCATTGTAATTGAACACTAGAGAACACAAGTTCACATAGAAATTGTTTCTCTTCACCCTTAAGAGTTAAGATTATA TATTTACATAGTTTTTTCTGGTGTTTGTGCAGGTGAGGAAGTTGGAGCTACTGATAACAATCCTAGTTTTTGTGATGGCT GCATGTTTCTTTGCTGAAATGAGCTATGTCAATGTCCCCGCTTCTGGTATACTCAAGGGAATGTTTGTGCCCAAACTCGA TGGTGATGGAGCCGTTGGCGATGCAATTGCCCTTCTCGGTGCCCTCATCATGCCGTATTCTCTCTTTCCCTTTGACATAA CTTTCAGAGTTTAATAACTGTGCACTCATAATACAATTTTTTTTTACAACGTCATCTAATTAGAAAAGTTCATGTATTGT AAATATCTACTACCCAAAATTTTGCTTTGGACAAAATGCAGGCACAATCTTTTCCTCCATTCTGCTCTGGTGCTGTCTAG AAAAGTACCAATTTCGGTGCGCGGCATCAATGTAAGCCATCCTTAAATTAAACAAATCCATAAGTGACAAACTATAAAAT TTCACAAATAAATAATATTTGAGACAACTTAAACTCAAACCTAGCAACTGATATAAACATGTTCCTAGTTGCAAATCTAG CTTTGCTTAATATATAACATGTGAAACTTATACTATTATGACTTATCTGATTGATTATGCAGGATGCATGTAGATACTTT CTCATAGAAAGTGGGTTCGCACTCTTTGTAGCATTTCTAATCAATGTTGCAATGATTTCTGTCACGGGCACTGTTTGTTT TGCCAACAACCTTTCTGCAGAAAATACTGATCGGTGCAATGATCTTACCCTTAACTCTGCTTCCTTCCTTCTGAAGGTTC TTAATTTAATTCACTATGCAGCAGAAGTTTCTATAATTGAACATAATATAAAGTTTTCTGCCTAACTAAACAAAGTTATC TCACATATAATTTCAATATACATCAATTGCAGAATGCGTTGGGAAGGTCTAGCTCAACCGTTTATGCCATAGCACTTCTA GCCTCAGGACAAAGCTCTACTATCACTGGAACCTATGCAGGGCAGTACATTATGCAGGTAATTAAGAAAATGATTCGTCG AAATCCGCATAGTGCAGACACATTGTGGACACTAAGGGTGAGAAAGAAATGGAAGAGAGAATAGTAAGAGATGTGATATA TAATGTGACGTGATAAGAAGAGAGATTGAGAAAAAAAATGAGGTGTCGGTGGAGTGTCTAACTGTTTGGATGTCTAAATA TCATTATTGTTTAGGGATACAATTAAACATTTTTTAATGAAGAAATGATAACTAACATGTTATGTTGAAGGATTTACTGA ATTTAATTAGGTGATTGTTTTGTTGGTGCTATATATAGGGTTTCTTGGAGATAAAGATGAAAAGATGGAAGAGGAACTTA ATGACTAGGTGCATTGCCATAGCACCTAGTCTTGTTGTTTCCATCATTGGTGGTTCTTCTGGATCCAGTCGCCTTATTAT CATTGCATCAGTGTGTATATTCTATATTCTCATTGTTCCCTTCACATAGAGAGAATTGAATTATATATACATGAACACCA ACTAAAATTGTTTTGCAGATGATACTTTCTTTTGAGCTTCCTTTTGCATTGATTCCACTTCTTAAGTTTAGCAGCAGCAG TACCAAGATGGGACCTCACAAGAATTCTTTGATTGTAAGTTGTCCTTTTCCATTTCTATAAAAGAAAATTCAATCCAAGT AGGATCAAAATCTTCTGTCCCCAAATAGTGTCTCAATTTCCTGTTTCACGAATGAAATATTGTCAGATCAATTAAAAACG ACATGAGTGGGGCAGTATCAAATTTATATGGTGGTTTTTAATTGACATATCAAGATTTTATTGGTAGGACTGAGAATGAG ACACAATTTGATATCAGAAGATTTCAATCCTTATATAAAATGGTTATAGCCATTAAGATTAGTGAAATAGATTTGAAAAC ATGTGACATAATCTTCTTGCAGATTATTGTCATCTCATGGATACTAGGCTTTGGGATCATTGGTGTCAATGTATACTATC TCAGCACTGCCTTCGTGAAGTGGCTAATTCATAGCAATTTGCCAAAGGTGGCAAATGTGTTCATAGGGATTATAGTGTTT CCTCTAATGGCAGTTTATATTCTCTCAGTTATCTACCTAACATTTAGAAAAGACACTGTTAAGACATATATTGAGACAAA GAATGACCCAATGCAAAGCCATGTAGAAAATGGGATTTTGGATAATGGTCAATTAGAGTTGAGCCATGCTCCTTACAGAG AAGACTTAGCTAGTTTCTCACTTCCAGAATAGGGGACTAAGTCTATGAATCAAAGGCATCGCCAACAAAGAAAGGGAAAC TTCACATTGCTTTCAAATCATTCAAATGTGTAACGAGAATCTAATGATTGTTGGTTCTCAAAATGATTGGTTAAAGACTT AAAGTGATCATAATATTAGGACTTTGAGAATCTTCTGCTTGAGTTGACCCCATATGCTAGTTTTGTTTATATTGAGATGT AAGTTTTATGTGTTTTGTTTTATAGTAGAAGTTTATAAGAAAACTAGTTTAGTGCAAGCACCA
CDS sequence (LotjaGi1g1v0264500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGCAAGTGAACGATGCAAATGGACCACATAATCATCAATACTCCTCAAATCACGAGAAACCATGGAGAAAGTT CTTGACACATGTAGGTCCTGGTTTCCTGGTCTCCTTGGCTTACCTTGATCCTGGGAACATGGAAACTGATATGCAAGCTG GAGCTAACCACAGATATGAGCTGCTCTGGTTGGTACTCATTGGACTGATATTTGCGCTTATAATTCAGTCATTGGCTGCA AATCTCGGTGTAATCACTGGGAAACACCTTTCAGAAATATGTAAAGCAGAGTACCCATTATTTGTTAAGTACTGCTTGTG GTTATTAGCAGAGGTTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTTGCACTTAACATACTCTTCC ACATACCATTATGGGTAGGAGTTCTGATGACTGGCTGCAGCACTCTCTTGCTTCTGAGTCTGCAGAGATTTGGGGTGAGG AAGTTGGAGCTACTGATAACAATCCTAGTTTTTGTGATGGCTGCATGTTTCTTTGCTGAAATGAGCTATGTCAATGTCCC CGCTTCTGGTATACTCAAGGGAATGTTTGTGCCCAAACTCGATGGTGATGGAGCCGTTGGCGATGCAATTGCCCTTCTCG GTGCCCTCATCATGCCGCACAATCTTTTCCTCCATTCTGCTCTGGTGCTGTCTAGAAAAGTACCAATTTCGGTGCGCGGC ATCAATGATGCATGTAGATACTTTCTCATAGAAAGTGGGTTCGCACTCTTTGTAGCATTTCTAATCAATGTTGCAATGAT TTCTGTCACGGGCACTGTTTGTTTTGCCAACAACCTTTCTGCAGAAAATACTGATCGGTGCAATGATCTTACCCTTAACT CTGCTTCCTTCCTTCTGAAGAATGCGTTGGGAAGGTCTAGCTCAACCGTTTATGCCATAGCACTTCTAGCCTCAGGACAA AGCTCTACTATCACTGGAACCTATGCAGGGCAGTACATTATGCAGGGTTTCTTGGAGATAAAGATGAAAAGATGGAAGAG GAACTTAATGACTAGGTGCATTGCCATAGCACCTAGTCTTGTTGTTTCCATCATTGGTGGTTCTTCTGGATCCAGTCGCC TTATTATCATTGCATCAATGATACTTTCTTTTGAGCTTCCTTTTGCATTGATTCCACTTCTTAAGTTTAGCAGCAGCAGT ACCAAGATGGGACCTCACAAGAATTCTTTGATTATTATTGTCATCTCATGGATACTAGGCTTTGGGATCATTGGTGTCAA TGTATACTATCTCAGCACTGCCTTCGTGAAGTGGCTAATTCATAGCAATTTGCCAAAGGTGGCAAATGTGTTCATAGGGA TTATAGTGTTTCCTCTAATGGCAGTTTATATTCTCTCAGTTATCTACCTAACATTTAGAAAAGACACTGTTAAGACATAT ATTGAGACAAAGAATGACCCAATGCAAAGCCATGTAGAAAATGGGATTTTGGATAATGGTCAATTAGAGTTGAGCCATGC TCCTTACAGAGAAGACTTAGCTAGTTTCTCACTTCCAGAATAG
Protein sequence (LotjaGi1g1v0264500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEQVNDANGPHNHQYSSNHEKPWRKFLTHVGPGFLVSLAYLDPGNMETDMQAGANHRYELLWLVLIGLIFALIIQSLAA NLGVITGKHLSEICKAEYPLFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPLWVGVLMTGCSTLLLLSLQRFGVR KLELLITILVFVMAACFFAEMSYVNVPASGILKGMFVPKLDGDGAVGDAIALLGALIMPHNLFLHSALVLSRKVPISVRG INDACRYFLIESGFALFVAFLINVAMISVTGTVCFANNLSAENTDRCNDLTLNSASFLLKNALGRSSSTVYAIALLASGQ SSTITGTYAGQYIMQGFLEIKMKRWKRNLMTRCIAIAPSLVVSIIGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSS TKMGPHKNSLIIIVISWILGFGIIGVNVYYLSTAFVKWLIHSNLPKVANVFIGIIVFPLMAVYILSVIYLTFRKDTVKTY IETKNDPMQSHVENGILDNGQLELSHAPYREDLASFSLPE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 12 | 519 | 508 | 3.8E-277 | – | |
| PANTHER | 12 | 519 | 508 | 3.8E-277 | ||
| Hamap | 13 | 435 | 423 | 36.839 | ||
| Phobius | 24 | 42 | 19 | - | – | |
| TIGRFAM | 25 | 401 | 377 | 6.6E-119 | ||
| Phobius | 43 | 61 | 19 | - | – | |
| Pfam | 48 | 409 | 362 | 7.2E-115 | ||
| TMHMM | 61 | 80 | 20 | - | – | |
| Phobius | 62 | 86 | 25 | - | – | |
| Phobius | 87 | 97 | 11 | - | – | |
| Phobius | 98 | 119 | 22 | - | – | |
| PRINTS | 106 | 132 | 27 | 3.0E-66 | ||
| Phobius | 120 | 130 | 11 | - | – | |
| Phobius | 131 | 152 | 22 | - | – | |
| TMHMM | 131 | 153 | 23 | - | – | |
| PRINTS | 134 | 153 | 20 | 3.0E-66 | ||
| Phobius | 153 | 163 | 11 | - | – | |
| PRINTS | 159 | 180 | 22 | 3.0E-66 | ||
| TMHMM | 162 | 184 | 23 | - | – | |
| Phobius | 164 | 184 | 21 | - | – | |
| Phobius | 185 | 203 | 19 | - | – | |
| TMHMM | 204 | 226 | 23 | - | – | |
| Phobius | 204 | 224 | 21 | - | – | |
| PRINTS | 209 | 232 | 24 | 3.0E-66 | ||
| Phobius | 225 | 244 | 20 | - | – | |
| Phobius | 245 | 269 | 25 | - | – | |
| TMHMM | 247 | 269 | 23 | - | – | |
| Phobius | 270 | 308 | 39 | - | – | |
| Phobius | 309 | 329 | 21 | - | – | |
| TMHMM | 310 | 332 | 23 | - | – | |
| PRINTS | 319 | 338 | 20 | 3.0E-66 | ||
| Phobius | 330 | 348 | 19 | - | – | |
| PRINTS | 347 | 364 | 18 | 3.0E-66 | ||
| Phobius | 349 | 368 | 20 | - | – | |
| TMHMM | 353 | 370 | 18 | - | – | |
| Phobius | 369 | 373 | 5 | - | – | |
| Phobius | 374 | 396 | 23 | - | – | |
| TMHMM | 375 | 397 | 23 | - | – | |
| PRINTS | 379 | 398 | 20 | 3.0E-66 | ||
| Phobius | 397 | 407 | 11 | - | – | |
| Phobius | 408 | 430 | 23 | - | – | |
| TMHMM | 410 | 432 | 23 | - | – | |
| Phobius | 431 | 449 | 19 | - | – | |
| TMHMM | 447 | 469 | 23 | - | – | |
| Phobius | 450 | 472 | 23 | - | – | |
| Phobius | 473 | 520 | 48 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0264500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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