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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0273500 |
| Transcript ID | LotjaGi1g1v0273500.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carboxypeptidase; TAIR: AT5G42240.1 serine carboxypeptidase-like 42; Swiss-Prot: sp|Q9FH05|SCP42_ARATH Serine carboxypeptidase-like 42; TrEMBL-Plants: tr|K7KM25|K7KM25_SOYBN Carboxypeptidase; Found in the gene: LotjaGi1g1v0273500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:67013629..67017486) extracted from Lotus japonicus Gifu genome v1.2.
CCTCACCCTTTGGCTCAATGGAGGTTGGTTATATTATACCCTTATTATTCTCATGTTGTTTAATTGCTATTGCTTATGCT ACTGTAATTTCTTCATTATTCTTGTTATGAGATTTTGAGTTTTCATGGAATCAATTTTCATCCTTGTTTCATTCCTAATG CCTAGTCAATGTCTCTAGCTTGTTTCTTCCCCCCATTTTCCTTTTAGGCTATTTTGTCTTGTCTTTTCATCCTCATACTT GTTCTTATGATGATTTTTATCCTTTTCTGAAAAGCATAGTTGGGTGCCATTTATCTATCTGTCTTGTCCCTATCAACTCA AGTTGTTTTGTCTTACTGGTGGAAAATCCTGTTTCCTTGCCCCTCACAATGACAGATCATGTGATCAAAAAATTTGAAAT TTCATGACTTTGGCTTTTCAGTAGTGTATCCACAGTTCATAGATACATAATTTTTTTAAATGAAAACTACAATAGGCTAG CATGTTTGTATCAGTTTCTCTTCACTCAAAATCAATTACGAAACTCAGAGGTTACTCACAGAAGCATCAAAATTGATATT GTTTTCTGAATAAATGGTAAAAGGATTTTCAAACTTCAAATCAAATTATAGAGGTTTTCACATGTTGCAATTACTTTACC TTAAGCTGTTAACTTTCATATATACAAGTATACAACTTCAATTCATCAAGTGCCCGTCTTTCTCAGGTCCGGGGTGTTCT TCAATTGGAGGAGGTGCCTTTACTGAACTAGGTCCCTTTTTTCCTAGTGGTGATGGACGTGGTCTCAGGAGAAATTCAAA GGCTTGGAATAAAGGTATTTTATGTGACACCAGTTTTTCTTTTAATGTTGGTGAATAATTTGGGTGTACATTAGTTCCTG AATCCTGATGCTGATGATTTTGTGTCTTTTTCATAGCATCTAACCTCCTCTTTGTGGAGTCTCCTGCTGGTGTTGGTTGG TCATACTCAAATACAACTTCTGATTATAACACTGGAGATGCCTCCTCAGGTAAAGAGGGTGGCCTTTGTATATTCACTTC TATTGTCATAATCTCGCATGTTTGGTTTCATAATTTACATATAAATCAATACGTTGTTTGGAATCTCGTTCAAAAACCAC GGTGGATGGAAACAATTTTCCATAGTTTTTTCTTTTGTTCATCATGATTTTGACTTCATTATCATTTTCGAACGAGTTTC CAAACCTGCAATCAAAAGCTAAAACTAGTAGCATTTCACCGTGGAACCAAACTTGCTATAAACTTTTCTTCTTGGCTAAT ACACCATACTTTGTGATTATCTATGCAAAATTTCAAATTTTACTAAGGGATGTGAACATAATTTTTGTTTTTTTTTTGTT TTTGACAGCCAATGATCTGCTTTTGTTCATGCTGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGAAGCTGTTCC TTACTGGAGAAAGCTATGCAGGTGCAACAAAAAATAATCGAATCCCAATTCAAATTAACTTATTCTATTGTTTTGAAGTT CAGAAAAGTTGGTCTCGAGTTTCAAAATATTCTGTTTATATTCAGCTGACGTGATTCTGAAATGAGATTCAACTTTTTAT TCTATATTATTTATCCACATGCTGATGATAACTATGCCATCATCATGACTACTATGAAGTTATTGTCCATTTTATATAAT TTAATCAAGAAATTGTGTTTTTGTCCTTCTTTTTTCCCCCTCTTGTTTCCCATTTTGCGTTTATTCTGTTTTCTGTTGCT CTGTGATATAATTTTGTTTCTTACATTTTTAATGTCATGCAGGACATTACATACCACAGTTAGCTAATGCTGTTCTGGAT TACAATGCTCATTCAACTAGCTTCAAATTCAACATTAAAGGACTTGCTGTAAGATACTAAGATCCCATTCATGTGATATC TTTTGGCTTAATTTACTCATAAGTTTTATATTTGTGTTACTTTTGGTCTTTTGGACTAGTCTTTGTTATGCTGAAAGATG CTCTTAAGAGATGAGATTTATCATTTTCTCTTGTTCTTTTTTTTTTGTTAGATTGGAAACCCACTTCTGAAACTGGAACG TGATGCAGAAGCAACATATGAATATTTCTGGTCTCATGGAATGATTTCTGATGAAATTGGCATGGCGATTATGAATGATT GTGATTTTGATGATTACACCTTCACCTCTACTCACAATGAGTCTAAAGCATGCAACGATGCCATGAACAAAGCTAATGAG ATTGTTGGCGATTACATAAACAACTATGATGTGATTCTGGATGTGTGCTATCCATCCATAGTTCAACAGGAACTGAGGCT GAAAAAAATTGTACTTAGCCCCTTTCATTTCTTCTGTTCTGGTAATTATTTTTATGAATTTATAAACAAATAATTAATTT GATTACGTTTAATGCAGGCTACTAAAATAAGCATAGGTGTTGATGTCTGTATGAGTTTTGAAAGAAGCCTGTACTTCAAC CTCCCTGAAGTTCAGAAGGCTCTGCATGCAAACCGTACCAATCTTCCATATAAGTGGTCCATGTGCAGTCCGTAAGTCGC TAATTATATATCAAACATTTGTAATCTTCAGCAATAATGCCTACATTCACGCATTCACGATATATATGGATCGAACTATT AAAATTTGTCGACTTATTTGCTACTTTCACTGCTGAAATGACTGATCTAAGCACATCTTCATTGCAGGGTTTTGAATTAT AGCGAAACTGATCCTAAAATCAATATCCTTCCAATTCTCAAACGGATCGTTAAAAACCATATTCCAGTATGGGTTTTCAG GTAATGATTTCAACAAGCCAGTCATCATTTCCTATATACAGTTTACCTTTTTTTCTTGATCGTACTCTAATTATTTACCT TAAATTATCACAGTGGAGACCAAGATTCTGTTGTGCCATTACTCGGTTCTCGAACACTCATTCGTGAACTAGCTCATGAA CTGCAGTACAAGGTTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTACTTAACAATTTCCATTGAAAAATACT TCATTTTTCTGTATTATGGTTTTGTAATTTTATTTATAGTATGTTTAGAATTCCTTGACCGTGTATCCAAACATGCGCTA AAATTGATTCTAAAACTAAAATCCATTACGGAAAGATGTTCCGTTACTAGCTTCTTGATATCAGAATTGATTTGGAGAAC AAATAAGCATTTAGTATGGTTTCCTATGCTAATCAAGTCATAAATTGATAGTATAGTATGGTTTTGTAATTTCATTTATA ATATGTTTAGAAGTTGTTATACAATTGATTCTAAAGCTAAAATGTGTTATAGAAAAAAAGCCTATATAAGTAGCTTCTGG TTACCAGAATTAATTTTGAGAAAAAAATAAATTGATACAAAGATGTTAATCAAGTTATAAATTAATGATAATTTGGTGAC ACATATATATATATGCAGGTTGGAGGTTGGGTAACAGAATATGGAAATTTGTTGACTTTCGCCACAGTAAGGGGAGCTGC TCACATGGTACCTTATGCACAGCCATCAAGAGCACTTGGTCTATTCAGTGCCTTTGTGCGTGGTAGCAGATTGCCAAACA CAACACGCCCTTCAATTGATGAATAATTAACAAGTTGGATCTGCCAAACACAAACAAAACACACCCTTCAATTGATTCCT AGAGCTCAAGACTTTAGCCCAAAAGATGAAGCAGTGAAAAAGAAATTGAAATTTAGAAGTGTCTATTTATTTGAAAGGCC ATTGGCTATTTGTATGGAAAACATAAAGGAAAGTGGTGGAATAAAAGTCCATTCTTTCGTACTTCTTATTCTATTCATTC ACTGCTTTGCATCTTCGT
CDS sequence (LotjaGi1g1v0273500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGAAGCTGTTCCTTACTGGAGAAAGCTATGCAGGACATTA CATACCACAGTTAGCTAATGCTGTTCTGGATTACAATGCTCATTCAACTAGCTTCAAATTCAACATTAAAGGACTTGCTA TTGGAAACCCACTTCTGAAACTGGAACGTGATGCAGAAGCAACATATGAATATTTCTGGTCTCATGGAATGATTTCTGAT GAAATTGGCATGGCGATTATGAATGATTGTGATTTTGATGATTACACCTTCACCTCTACTCACAATGAGTCTAAAGCATG CAACGATGCCATGAACAAAGCTAATGAGATTGTTGGCGATTACATAAACAACTATGATGTGATTCTGGATGTGTGCTATC CATCCATAGTTCAACAGGAACTGAGGCTGAAAAAAATTGCTACTAAAATAAGCATAGGTGTTGATGTCTGTATGAGTTTT GAAAGAAGCCTGTACTTCAACCTCCCTGAAGTTCAGAAGGCTCTGCATGCAAACCGTACCAATCTTCCATATAAGTGGTC CATGTGCAGTCCGGTTTTGAATTATAGCGAAACTGATCCTAAAATCAATATCCTTCCAATTCTCAAACGGATCGTTAAAA ACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTCGGTTCTCGAACACTCATTCGTGAA CTAGCTCATGAACTGCAGTACAAGGTTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAAC AGAATATGGAAATTTGTTGACTTTCGCCACAGTAAGGGGAGCTGCTCACATGGTACCTTATGCACAGCCATCAAGAGCAC TTGGTCTATTCAGTGCCTTTGTGCGTGGTAGCAGATTGCCAAACACAACACGCCCTTCAATTGATGAATAA
Protein sequence (LotjaGi1g1v0273500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKWYEKFPSYRSRKLFLTGESYAGHYIPQLANAVLDYNAHSTSFKFNIKGLAIGNPLLKLERDAEATYEYFWSHGMISD EIGMAIMNDCDFDDYTFTSTHNESKACNDAMNKANEIVGDYINNYDVILDVCYPSIVQQELRLKKIATKISIGVDVCMSF ERSLYFNLPEVQKALHANRTNLPYKWSMCSPVLNYSETDPKINILPILKRIVKNHIPVWVFSGDQDSVVPLLGSRTLIRE LAHELQYKVTVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALGLFSAFVRGSRLPNTTRPSIDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 309 | 309 | 6.0E-161 | – | |
| PANTHER | 1 | 309 | 309 | 6.0E-161 | ||
| Gene3D | 1 | 306 | 306 | 3.0E-68 | ||
| Pfam | 2 | 302 | 301 | 1.3E-72 | ||
| SUPERFAMILY | 2 | 305 | 304 | 6.13E-66 | ||
| PRINTS | 4 | 29 | 26 | 6.1E-16 | ||
| ProSitePatterns | 18 | 25 | 8 | - | ||
| PRINTS | 273 | 286 | 14 | 6.1E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type carboxypeptidase activity | Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi1g1v0273500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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