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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0273500 |
Transcript ID | LotjaGi1g1v0273500.4 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Carboxypeptidase; TAIR: AT5G42240.1 serine carboxypeptidase-like 42; Swiss-Prot: sp|Q9FH05|SCP42_ARATH Serine carboxypeptidase-like 42; TrEMBL-Plants: tr|K7KM25|K7KM25_SOYBN Carboxypeptidase; Found in the gene: LotjaGi1g1v0273500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:67013861..67017083) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTTTGGCTTTTCAGTAGTGTATCCACAGTTCATAGATACATAATTTTTTTAAATGAAAACTACAATAGGCTAGCAT GTTTGTATCAGTTTCTCTTCACTCAAAATCAATTACGAAACTCAGAGGTTACTCACAGAAGCATCAAAATTGATATTGTT TTCTGAATAAATGGTAAAAGGATTTTCAAACTTCAAATCAAATTATAGAGGTTTTCACATGTTGCAATTACTTTACCTTA AGCTGTTAACTTTCATATATACAAGTATACAACTTCAATTCATCAAGTGCCCGTCTTTCTCAGGTCCGGGGTGTTCTTCA ATTGGAGGAGGTGCCTTTACTGAACTAGGTCCCTTTTTTCCTAGTGGTGATGGACGTGGTCTCAGGAGAAATTCAAAGGC TTGGAATAAAGGTATTTTATGTGACACCAGTTTTTCTTTTAATGTTGGTGAATAATTTGGGTGTACATTAGTTCCTGAAT CCTGATGCTGATGATTTTGTGTCTTTTTCATAGCATCTAACCTCCTCTTTGTGGAGTCTCCTGCTGGTGTTGGTTGGTCA TACTCAAATACAACTTCTGATTATAACACTGGAGATGCCTCCTCAGGTAAAGAGGGTGGCCTTTGTATATTCACTTCTAT TGTCATAATCTCGCATGTTTGGTTTCATAATTTACATATAAATCAATACGTTGTTTGGAATCTCGTTCAAAAACCACGGT GGATGGAAACAATTTTCCATAGTTTTTTCTTTTGTTCATCATGATTTTGACTTCATTATCATTTTCGAACGAGTTTCCAA ACCTGCAATCAAAAGCTAAAACTAGTAGCATTTCACCGTGGAACCAAACTTGCTATAAACTTTTCTTCTTGGCTAATACA CCATACTTTGTGATTATCTATGCAAAATTTCAAATTTTACTAAGGGATGTGAACATAATTTTTGTTTTTTTTTTGTTTTT GACAGCCAATGATCTGCTTTTGTTCATGCTGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGAAGCTGTTCCTTA CTGGAGAAAGCTATGCAGGTGCAACAAAAAATAATCGAATCCCAATTCAAATTAACTTATTCTATTGTTTTGAAGTTCAG AAAAGTTGGTCTCGAGTTTCAAAATATTCTGTTTATATTCAGCTGACGTGATTCTGAAATGAGATTCAACTTTTTATTCT ATATTATTTATCCACATGCTGATGATAACTATGCCATCATCATGACTACTATGAAGTTATTGTCCATTTTATATAATTTA ATCAAGAAATTGTGTTTTTGTCCTTCTTTTTTCCCCCTCTTGTTTCCCATTTTGCGTTTATTCTGTTTTCTGTTGCTCTG TGATATAATTTTGTTTCTTACATTTTTAATGTCATGCAGGACATTACATACCACAGTTAGCTAATGCTGTTCTGGATTAC AATGCTCATTCAACTAGCTTCAAATTCAACATTAAAGGACTTGCTGTAAGATACTAAGATCCCATTCATGTGATATCTTT TGGCTTAATTTACTCATAAGTTTTATATTTGTGTTACTTTTGGTCTTTTGGACTAGTCTTTGTTATGCTGAAAGATGCTC TTAAGAGATGAGATTTATCATTTTCTCTTGTTCTTTTTTTTTTGTTAGATTGGAAACCCACTTCTGAAACTGGAACGTGA TGCAGAAGCAACATATGAATATTTCTGGTCTCATGGAATGATTTCTGATGAAATTGGCATGGCGATTATGAATGATTGTG ATTTTGATGATTACACCTTCACCTCTACTCACAATGAGTCTAAAGCATGCAACGATGCCATGAACAAAGCTAATGAGATT GTTGGCGATTACATAAACAACTATGATGTGATTCTGGATGTGTGCTATCCATCCATAGTTCAACAGGAACTGAGGCTGAA AAAAATTGTACTTAGCCCCTTTCATTTCTTCTGTTCTGGTAATTATTTTTATGAATTTATAAACAAATAATTAATTTGAT TACGTTTAATGCAGGCTACTAAAATAAGCATAGGTGTTGATGTCTGTATGAGTTTTGAAAGAAGCCTGTACTTCAACCTC CCTGAAGTTCAGAAGGCTCTGCATGCAAACCGTACCAATCTTCCATATAAGTGGTCCATGTGCAGTCCGTAAGTCGCTAA TTATATATCAAACATTTGTAATCTTCAGCAATAATGCCTACATTCACGCATTCACGATATATATGGATCGAACTATTAAA ATTTGTCGACTTATTTGCTACTTTCACTGCTGAAATGACTGATCTAAGCACATCTTCATTGCAGGGTTTTGAATTATAGC GAAACTGATCCTAAAATCAATATCCTTCCAATTCTCAAACGGATCGTTAAAAACCATATTCCAGTATGGGTTTTCAGGTA ATGATTTCAACAAGCCAGTCATCATTTCCTATATACAGTTTACCTTTTTTTCTTGATCGTACTCTAATTATTTACCTTAA ATTATCACAGTGGAGACCAAGATTCTGTTGTGCCATTACTCGGTTCTCGAACACTCATTCGTGAACTAGCTCATGAACTG CAGTACAAGGTTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTACTTAACAATTTCCATTGAAAAATACTTCA TTTTTCTGTATTATGGTTTTGTAATTTTATTTATAGTATGTTTAGAATTCCTTGACCGTGTATCCAAACATGCGCTAAAA TTGATTCTAAAACTAAAATCCATTACGGAAAGATGTTCCGTTACTAGCTTCTTGATATCAGAATTGATTTGGAGAACAAA TAAGCATTTAGTATGGTTTCCTATGCTAATCAAGTCATAAATTGATAGTATAGTATGGTTTTGTAATTTCATTTATAATA TGTTTAGAAGTTGTTATACAATTGATTCTAAAGCTAAAATGTGTTATAGAAAAAAAGCCTATATAAGTAGCTTCTGGTTA CCAGAATTAATTTTGAGAAAAAAATAAATTGATACAAAGATGTTAATCAAGTTATAAATTAATGATAATTTGGTGACACA TATATATATATGCAGGTTGGAGGTTGGGTAACAGAATATGGAAATTTGTTGACTTTCGCCACAGTAAGGGGAGCTGCTCA CATGGTACCTTATGCACAGCCATCAAGAGCACTTGGTCTATTCAGTGCCTTTGTGCGTGGTAGCAGATTGCCAAACACAA CACGCCCTTCAATTGATGAATAA
CDS sequence (LotjaGi1g1v0273500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGAAGCTGTTCCTTACTGGAGAAAGCTATGCAGGACATTA CATACCACAGTTAGCTAATGCTGTTCTGGATTACAATGCTCATTCAACTAGCTTCAAATTCAACATTAAAGGACTTGCTA TTGGAAACCCACTTCTGAAACTGGAACGTGATGCAGAAGCAACATATGAATATTTCTGGTCTCATGGAATGATTTCTGAT GAAATTGGCATGGCGATTATGAATGATTGTGATTTTGATGATTACACCTTCACCTCTACTCACAATGAGTCTAAAGCATG CAACGATGCCATGAACAAAGCTAATGAGATTGTTGGCGATTACATAAACAACTATGATGTGATTCTGGATGTGTGCTATC CATCCATAGTTCAACAGGAACTGAGGCTGAAAAAAATTGCTACTAAAATAAGCATAGGTGTTGATGTCTGTATGAGTTTT GAAAGAAGCCTGTACTTCAACCTCCCTGAAGTTCAGAAGGCTCTGCATGCAAACCGTACCAATCTTCCATATAAGTGGTC CATGTGCAGTCCGGTTTTGAATTATAGCGAAACTGATCCTAAAATCAATATCCTTCCAATTCTCAAACGGATCGTTAAAA ACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTCGGTTCTCGAACACTCATTCGTGAA CTAGCTCATGAACTGCAGTACAAGGTTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAAC AGAATATGGAAATTTGTTGACTTTCGCCACAGTAAGGGGAGCTGCTCACATGGTACCTTATGCACAGCCATCAAGAGCAC TTGGTCTATTCAGTGCCTTTGTGCGTGGTAGCAGATTGCCAAACACAACACGCCCTTCAATTGATGAATAA
Protein sequence (LotjaGi1g1v0273500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKWYEKFPSYRSRKLFLTGESYAGHYIPQLANAVLDYNAHSTSFKFNIKGLAIGNPLLKLERDAEATYEYFWSHGMISD EIGMAIMNDCDFDDYTFTSTHNESKACNDAMNKANEIVGDYINNYDVILDVCYPSIVQQELRLKKIATKISIGVDVCMSF ERSLYFNLPEVQKALHANRTNLPYKWSMCSPVLNYSETDPKINILPILKRIVKNHIPVWVFSGDQDSVVPLLGSRTLIRE LAHELQYKVTVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALGLFSAFVRGSRLPNTTRPSIDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 309 | 309 | 6.0E-161 | – | |
PANTHER | 1 | 309 | 309 | 6.0E-161 | ||
Gene3D | 1 | 306 | 306 | 3.0E-68 | ||
Pfam | 2 | 302 | 301 | 1.3E-72 | ||
SUPERFAMILY | 2 | 305 | 304 | 6.13E-66 | ||
PRINTS | 4 | 29 | 26 | 6.1E-16 | ||
ProSitePatterns | 18 | 25 | 8 | - | ||
PRINTS | 273 | 286 | 14 | 6.1E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Serine-type carboxypeptidase activity | Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi1g1v0273500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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