Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0273500 |
Transcript ID | LotjaGi1g1v0273500.1 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Carboxypeptidase; TAIR: AT5G42240.1 serine carboxypeptidase-like 42; Swiss-Prot: sp|Q9FH05|SCP42_ARATH Serine carboxypeptidase-like 42; TrEMBL-Plants: tr|V7AW51|V7AW51_PHAVU Carboxypeptidase; Found in the gene: LotjaGi1g1v0273500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:67013489..67018513) extracted from Lotus japonicus Gifu genome v1.2.
GGCGAAGATGCCAATGTGACTGTGAAGCCATACAAGGAAACAAGCCCCTTGCTTTGCTTAGTAGAAACCGCCACCACCAC TATGCCACTTTCTGTTCTTCTGGCTGTTTCTTTCTGTTTTTCAGGTCTATCTATTTAACAGTACAAGATTAATGCATTCC ATGCCATTCATTCACTCACTCACGCATTTGAAGCATCTTCTCACTATGCAGTTCACGTTTTAAGCTACTAGGAATTATTC ACACTTTCTGCTAAAAGCAAATCTTGGTATTCACGTGCCTCACTCAACCCTCATATTTAGCAGAATCTCCTCAATAATTC ATAATTATAATTATTCTATTCTTACTGTTTCATTGAGAAATGCAGTTACCTTTTGTAAAGGGTAAAAAGCCTATTTGGTT TGGTTTAATACATTTGCCTTAATTGATATAATAGTACAAGGTATGCTTTAAATAGTTTTTCAAATTTGAAATGCAAATAG TGTAAAATATAAGGGTCAAATTAAAAATGTATTGTTGTATGTTGATAAGATAGTATAAATACATGTTCTTTAGTGTTGTT GTACTCATTTTCAAATTGGCTGCAGCATTCAGTGACTCTTTGAAATGGGAGGGTCTTGGGTAGTTGGGTTTTTGGTTGTG GTTGGATTTGCCTGCTTGGTGGGCCCTGTTTGGGTAGATGGGTACCCTGCTGAGGATCTGGTGGTGAAATTGCCTGGTCA ACCCAAGGTTGGGTTCAGGCAATATGCTGGATATGTTGATATTGATGTCAAGCATGGAAAGAGCTTGTTCTACTATTTTG TGGAGGCTGAACATGACCATGGCAACAAGCCCCTCACCCTTTGGCTCAATGGAGGTTGGTTATATTATACCCTTATTATT CTCATGTTGTTTAATTGCTATTGCTTATGCTACTGTAATTTCTTCATTATTCTTGTTATGAGATTTTGAGTTTTCATGGA ATCAATTTTCATCCTTGTTTCATTCCTAATGCCTAGTCAATGTCTCTAGCTTGTTTCTTCCCCCCACCCTCACCCTTTGG CTCAATGGAGGTTGGTTATATTATACCCTTATTATTCTCATGTTGTTTAATTGCTATTGCTTATGCTACTGTAATTTCTT CATTATTCTTGTTATGAGATTTTGAGTTTTCATGGAATCAATTTTCATCCTTGTTTCATTCCTAATGCCTAGTCAATGTC TCTAGCTTGTTTCTTCCCCCCATTTTCCTTTTAGGCTATTTTGTCTTGTCTTTTCATCCTCATACTTGTTCTTATGATGA TTTTTATCCTTTTCTGAAAAGCATAGTTGGGTGCCATTTATCTATCTGTCTTGTCCCTATCAACTCAAGTTGTTTTGTCT TACTGGTGGAAAATCCTGTTTCCTTGCCCCTCACAATGACAGATCATGTGATCAAAAAATTTGAAATTTCATGACTTTGG CTTTTCAGTAGTGTATCCACAGTTCATAGATACATAATTTTTTTAAATGAAAACTACAATAGGCTAGCATGTTTGTATCA GTTTCTCTTCACTCAAAATCAATTACGAAACTCAGAGGTTACTCACAGAAGCATCAAAATTGATATTGTTTTCTGAATAA ATGGTAAAAGGATTTTCAAACTTCAAATCAAATTATAGAGGTTTTCACATGTTGCAATTACTTTACCTTAAGCTGTTAAC TTTCATATATACAAGTATACAACTTCAATTCATCAAGTGCCCGTCTTTCTCAGGTCCGGGGTGTTCTTCAATTGGAGGAG GTGCCTTTACTGAACTAGGTCCCTTTTTTCCTAGTGGTGATGGACGTGGTCTCAGGAGAAATTCAAAGGCTTGGAATAAA GGTATTTTATGTGACACCAGTTTTTCTTTTAATGTTGGTGAATAATTTGGGTGTACATTAGTTCCTGAATCCTGATGCTG ATGATTTTGTGTCTTTTTCATAGCATCTAACCTCCTCTTTGTGGAGTCTCCTGCTGGTGTTGGTTGGTCATACTCAAATA CAACTTCTGATTATAACACTGGAGATGCCTCCTCAGGTAAAGAGGGTGGCCTTTGTATATTCACTTCTATTGTCATAATC TCGCATGTTTGGTTTCATAATTTACATATAAATCAATACGTTGTTTGGAATCTCGTTCAAAAACCACGGTGGATGGAAAC AATTTTCCATAGTTTTTTCTTTTGTTCATCATGATTTTGACTTCATTATCATTTTCGAACGAGTTTCCAAACCTGCAATC AAAAGCTAAAACTAGTAGCATTTCACCGTGGAACCAAACTTGCTATAAACTTTTCTTCTTGGCTAATACACCATACTTTG TGATTATCTATGCAAAATTTCAAATTTTACTAAGGGATGTGAACATAATTTTTGTTTTTTTTTTGTTTTTGACAGCCAAT GATCTGCTTTTGTTCATGCTGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGAAGCTGTTCCTTACTGGAGAAAG CTATGCAGGTGCAACAAAAAATAATCGAATCCCAATTCAAATTAACTTATTCTATTGTTTTGAAGTTCAGAAAAGTTGGT CTCGAGTTTCAAAATATTCTGTTTATATTCAGCTGACGTGATTCTGAAATGAGATTCAACTTTTTATTCTATATTATTTA TCCACATGCTGATGATAACTATGCCATCATCATGACTACTATGAAGTTATTGTCCATTTTATATAATTTAATCAAGAAAT TGTGTTTTTGTCCTTCTTTTTTCCCCCTCTTGTTTCCCATTTTGCGTTTATTCTGTTTTCTGTTGCTCTGTGATATAATT TTGTTTCTTACATTTTTAATGTCATGCAGGACATTACATACCACAGTTAGCTAATGCTGTTCTGGATTACAATGCTCATT CAACTAGCTTCAAATTCAACATTAAAGGACTTGCTGTAAGATACTAAGATCCCATTCATGTGATATCTTTTGGCTTAATT TACTCATAAGTTTTATATTTGTGTTACTTTTGGTCTTTTGGACTAGTCTTTGTTATGCTGAAAGATGCTCTTAAGAGATG AGATTTATCATTTTCTCTTGTTCTTTTTTTTTTGTTAGATTGGAAACCCACTTCTGAAACTGGAACGTGATGCAGAAGCA ACATATGAATATTTCTGGTCTCATGGAATGATTTCTGATGAAATTGGCATGGCGATTATGAATGATTGTGATTTTGATGA TTACACCTTCACCTCTACTCACAATGAGTCTAAAGCATGCAACGATGCCATGAACAAAGCTAATGAGATTGTTGGCGATT ACATAAACAACTATGATGTGATTCTGGATGTGTGCTATCCATCCATAGTTCAACAGGAACTGAGGCTGAAAAAAATTGTA CTTAGCCCCTTTCATTTCTTCTGTTCTGGTAATTATTTTTATGAATTTATAAACAAATAATTAATTTGATTACGTTTAAT GCAGGCTACTAAAATAAGCATAGGTGTTGATGTCTGTATGAGTTTTGAAAGAAGCCTGTACTTCAACCTCCCTGAAGTTC AGAAGGCTCTGCATGCAAACCGTACCAATCTTCCATATAAGTGGTCCATGTGCAGTCCGTAAGTCGCTAATTATATATCA AACATTTGTAATCTTCAGCAATAATGCCTACATTCACGCATTCACGATATATATGGATCGAACTATTAAAATTTGTCGAC TTATTTGCTACTTTCACTGCTGAAATGACTGATCTAAGCACATCTTCATTGCAGGGTTTTGAATTATAGCGAAACTGATC CTAAAATCAATATCCTTCCAATTCTCAAACGGATCGTTAAAAACCATATTCCAGTATGGGTTTTCAGGTAATGATTTCAA CAAGCCAGTCATCATTTCCTATATACAGTTTACCTTTTTTTCTTGATCGTACTCTAATTATTTACCTTAAATTATCACAG TGGAGACCAAGATTCTGTTGTGCCATTACTCGGTTCTCGAACACTCATTCGTGAACTAGCTCATGAACTGCAGTACAAGG TTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTACTTAACAATTTCCATTGAAAAATACTTCATTTTTCTGTA TTATGGTTTTGTAATTTTATTTATAGTATGTTTAGAATTCCTTGACCGTGTATCCAAACATGCGCTAAAATTGATTCTAA AACTAAAATCCATTACGGAAAGATGTTCCGTTACTAGCTTCTTGATATCAGAATTGATTTGGAGAACAAATAAGCATTTA GTATGGTTTCCTATGCTAATCAAGTCATAAATTGATAGTATAGTATGGTTTTGTAATTTCATTTATAATATGTTTAGAAG TTGTTATACAATTGATTCTAAAGCTAAAATGTGTTATAGAAAAAAAGCCTATATAAGTAGCTTCTGGTTACCAGAATTAA TTTTGAGAAAAAAATAAATTGATACAAAGATGTTAATCAAGTTATAAATTAATGATAATTTGGTGACACATATATATATA TGCAGGTTGGAGGTTGGGTAACAGAATATGGAAATTTGTTGACTTTCGCCACAGTAAGGGGAGCTGCTCACATGGTACCT TATGCACAGCCATCAAGAGCACTTGGTCTATTCAGTGCCTTTGTGCGTGGTAGCAGATTGCCAAACACAACACGCCCTTC AATTGATGAATAATTAACAAGTTGGATCTGCCAAACACAAACAAAACACACCCTTCAATTGATTCCTAGAGCTCAAGACT TTAGCCCAAAAGATGAAGCAGTGAAAAAGAAATTGAAATTTAGAAGTGTCTATTTATTTGAAAGGCCATTGGCTATTTGT ATGGAAAACATAAAGGAAAGTGGTGGAATAAAAGTCCATTCTTTCGTACTTCTTATTCTATTCATTCACTGCTTTGCATC TTCGTTCTTTATTTGAAAGCACATACTTCTACATGTTTCAGCTAAAAGTTAGAACTTAGTGGTGCTAAATAGTAAAATAT TAAATGCTGGCTTGTCCGACATTGCTTGAAATCGCGAGAGCAATTTAAAATACCAAAAAAAATTG
CDS sequence (LotjaGi1g1v0273500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGGTCTTGGGTAGTTGGGTTTTTGGTTGTGGTTGGATTTGCCTGCTTGGTGGGCCCTGTTTGGGTAGATGGGTA CCCTGCTGAGGATCTGGTGGTGAAATTGCCTGGTCAACCCAAGGTTGGGTTCAGGCAATATGCTGGATATGTTGATATTG ATGTCAAGCATGGAAAGAGCTTGTTCTACTATTTTGTGGAGGCTGAACATGACCATGGCAACAAGCCCCTCACCCTTTGG CTCAATGGAGGTCCGGGGTGTTCTTCAATTGGAGGAGGTGCCTTTACTGAACTAGGTCCCTTTTTTCCTAGTGGTGATGG ACGTGGTCTCAGGAGAAATTCAAAGGCTTGGAATAAAGCATCTAACCTCCTCTTTGTGGAGTCTCCTGCTGGTGTTGGTT GGTCATACTCAAATACAACTTCTGATTATAACACTGGAGATGCCTCCTCAGCCAATGATCTGCTTTTGTTCATGCTGAAA TGGTACGAGAAGTTTCCTTCCTACAGATCAAGGAAGCTGTTCCTTACTGGAGAAAGCTATGCAGGACATTACATACCACA GTTAGCTAATGCTGTTCTGGATTACAATGCTCATTCAACTAGCTTCAAATTCAACATTAAAGGACTTGCTATTGGAAACC CACTTCTGAAACTGGAACGTGATGCAGAAGCAACATATGAATATTTCTGGTCTCATGGAATGATTTCTGATGAAATTGGC ATGGCGATTATGAATGATTGTGATTTTGATGATTACACCTTCACCTCTACTCACAATGAGTCTAAAGCATGCAACGATGC CATGAACAAAGCTAATGAGATTGTTGGCGATTACATAAACAACTATGATGTGATTCTGGATGTGTGCTATCCATCCATAG TTCAACAGGAACTGAGGCTGAAAAAAATTGCTACTAAAATAAGCATAGGTGTTGATGTCTGTATGAGTTTTGAAAGAAGC CTGTACTTCAACCTCCCTGAAGTTCAGAAGGCTCTGCATGCAAACCGTACCAATCTTCCATATAAGTGGTCCATGTGCAG TCCGGTTTTGAATTATAGCGAAACTGATCCTAAAATCAATATCCTTCCAATTCTCAAACGGATCGTTAAAAACCATATTC CAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTCGGTTCTCGAACACTCATTCGTGAACTAGCTCAT GAACTGCAGTACAAGGTTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACAGAATATGG AAATTTGTTGACTTTCGCCACAGTAAGGGGAGCTGCTCACATGGTACCTTATGCACAGCCATCAAGAGCACTTGGTCTAT TCAGTGCCTTTGTGCGTGGTAGCAGATTGCCAAACACAACACGCCCTTCAATTGATGAATAA
Protein sequence (LotjaGi1g1v0273500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGSWVVGFLVVVGFACLVGPVWVDGYPAEDLVVKLPGQPKVGFRQYAGYVDIDVKHGKSLFYYFVEAEHDHGNKPLTLW LNGGPGCSSIGGGAFTELGPFFPSGDGRGLRRNSKAWNKASNLLFVESPAGVGWSYSNTTSDYNTGDASSANDLLLFMLK WYEKFPSYRSRKLFLTGESYAGHYIPQLANAVLDYNAHSTSFKFNIKGLAIGNPLLKLERDAEATYEYFWSHGMISDEIG MAIMNDCDFDDYTFTSTHNESKACNDAMNKANEIVGDYINNYDVILDVCYPSIVQQELRLKKIATKISIGVDVCMSFERS LYFNLPEVQKALHANRTNLPYKWSMCSPVLNYSETDPKINILPILKRIVKNHIPVWVFSGDQDSVVPLLGSRTLIRELAH ELQYKVTVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALGLFSAFVRGSRLPNTTRPSIDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 5 | 5 | - | – | |
SignalP_EUK | 1 | 24 | 24 | - | – | |
Phobius | 1 | 24 | 24 | - | – | |
TMHMM | 5 | 27 | 23 | - | – | |
Phobius | 6 | 19 | 14 | - | – | |
PANTHER | 7 | 466 | 460 | 5.9E-241 | ||
PANTHER | 7 | 466 | 460 | 5.9E-241 | – | |
Phobius | 20 | 24 | 5 | - | – | |
Phobius | 25 | 473 | 449 | - | – | |
Gene3D | 26 | 463 | 438 | 2.7E-125 | ||
SUPERFAMILY | 29 | 463 | 435 | 1.35E-113 | ||
Pfam | 38 | 459 | 422 | 1.5E-127 | ||
PRINTS | 113 | 125 | 13 | 1.5E-24 | ||
PRINTS | 126 | 136 | 11 | 1.5E-24 | ||
PRINTS | 161 | 186 | 26 | 1.5E-24 | ||
ProSitePatterns | 175 | 182 | 8 | - | ||
PRINTS | 430 | 443 | 14 | 1.5E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Serine-type carboxypeptidase activity | Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi1g1v0273500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…