Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0276600 |
| Transcript ID | LotjaGi1g1v0276600.6 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|V7AW87|V7AW87_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0276600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:67755692..67757741) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGTCCAAGCGGATCTTGAAGGAACTCAAGGATCTCCAGAAGGATCCTCCTACCTCATGCAGCGCCGGTAATCTTCC TCACTTTTCTCGTTTTGCAATTTTTCGATTTTCGAATTGGTTCAATTTTGATGCGTGTGTGTATGTCTGGGCTAATTATT TACGATTCTTGATTTTTTATCGCTAATTTTGGTGTTTGTCTGGGAAATTATCGTGTTTCTTTTAATTTTTTCGGAATTGG GAATGAATTGACGCCGTTGACTTGATGATGCATGCTGAAAGCAATCAATTGTGCTAATTTCATGACTATGCTGTGCAGGG AGGAAGTTTTGTATGATTTCTTGTTATGTGGATTGTTGAAGAAATTGTTGTGGTTTTGTAGATAAATTGTTGTGATCTTG TCCATAACAGCATTTTTTTATAGGAAAATTACGATTCTGTGCTCCTGCTTTTTCAATTTGAATTATAAACAGATTCTGTG AATGTTTAAGCTTACAATTAGTTTTATTGTTTGTTTTGCATGATTAGTGGTGAATCTATTTTCTGGATCATGTCTCTGTT ATGTGCTGATTACTTGTGTGTTTCTTGCCTAATAATTGGGATGAGGAAATCGGAATTGCTGCAGTTGAGGATTGATATGT ATTGAAATTGTACTTTTTATCCTGAGTATAGTCCAGCTGTTGTCAAAATTAACAATCTGTATAATCTTTGATTTTGTTTT TAAGTGTGCACTAAGTTATAGCTGTTATTTGATATTTCTCACATGAATCTCTGCTCCCACTAATAGGAGACTCAATTAGA GGGATGGCTGAAACTATTTAGTCTGCCAAGTTCCTTAAAATCAATTCAAGATTTTCATTTGACCTTGGTCTTCATTGTTT CAAACAAATCAATGGTATAATTCTACTGCATGTTTGAAAAACAATAACATTTTGTGGCTACTTAGAGAGGTTTTGGAAGA AAAAAAATGATTATTTCCCCTGAATTACCTGATCTGAATCATGTTGTTGGATAAAACTTTGTCAAATTGCTTTGGTTACT TCTCATATATATGTATCAGCTGGCTATATAAGCCCACCCATTCACTGCTTGGTTGCTTTGTCCAGACTAGTTATGCATTG GTAGCATTTAGAAGAACTATGCACTCATCCCCCCATGTTTTGACTGTTTGTTTCAAAACATTGCAGGTCCTGTTGCTGAA GACATGTTTCATTGGCAAGCAACAATTATGGGTCCTCCAGACAGTCCTTATGCTGGAGGTGTTTTCCTAGTAACTATCCA TTTCCCTCCGGATTACCCCTTCAAGCCACCCAAGGTTTGCAATCATTAAAATATCTATTTATTCTGTAATTTTTCTCCGC CGTCTTTAATTCAGTACCAGTTAAGTTATAAATGATGCTGTGATACATCTGTTCCCCATTTATTTAGTTTGTTTGGAGAA TTTCTGTTCTCAGGGAGCATTTTTTAATACTGAATGCTTTTTCAAAACACTCATTTCCTAGCATGAAACAAAATTTATGT TTGTTTCCGAAATTTCCTAAAAGAAAACAAATCCATTGCAGATGGCTTATACTGTTGAAAACCTTTTGGATATAGAGGAC TTCTTTTCTGTATGCCACCATGAGCACCATATAACTCCTGCTAATCTCTTTTCTATACTCATGGAATGTGAATATCTTGC AGGTTGCATTCCGGACCAAGGTATTTCACCCAAATATCAATAGCAACGGAAGCATTTGCCTTGACATATTGAAGGAGCAG TGGAGCCCTGCACTAACCATTTCCAAGGTCTGTTTATTGATTATTTTTCTTTATAAGAACAGCTCTTACTCCTGTTATAT ATTTTTCTTCATCTTCCAAGGACTCTAAACTAAAATATCACAATTTCATCTTCCTCAAATGTTTAGGTGTTGCTCTCAAT TTGTTCCTTGCTAACGGACCCAAACCCTGATGATCCCTTGGTCCCTGAAATCGCCCACATGTACAAGACAGACAGGAACA AGTATGAGTCAACTGCCAGGAGCTGGACCCAGAAATATGCCATGGGCTAA
CDS sequence (LotjaGi1g1v0276600.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCGCCGGGAGGAAATAAATTGTTGTGATCTTGTCCATAACAGTCCTGTTGCTGAAGACATGTTTCATTGGCAAGC AACAATTATGGGTCCTCCAGACAGTCCTTATGCTGGAGGTGTTTTCCTAGTAACTATCCATTTCCCTCCGGATTACCCCT TCAAGCCACCCAAGGTTGCATTCCGGACCAAGGTATTTCACCCAAATATCAATAGCAACGGAAGCATTTGCCTTGACATA TTGAAGGAGCAGTGGAGCCCTGCACTAACCATTTCCAAGGTGTTGCTCTCAATTTGTTCCTTGCTAACGGACCCAAACCC TGATGATCCCTTGGTCCCTGAAATCGCCCACATGTACAAGACAGACAGGAACAAGTATGAGTCAACTGCCAGGAGCTGGA CCCAGAAATATGCCATGGGCTAA
Protein sequence (LotjaGi1g1v0276600.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRREEINCCDLVHNSPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDI LKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTQKYAMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 139 | 139 | 7.4E-67 | – | |
| Gene3D | 4 | 140 | 137 | 4.8E-66 | ||
| CDD | 11 | 134 | 124 | 1.58634E-65 | ||
| SUPERFAMILY | 11 | 139 | 129 | 2.18E-58 | ||
| PANTHER | 13 | 139 | 127 | 1.1E-86 | – | |
| PANTHER | 13 | 139 | 127 | 1.1E-86 | – | |
| ProSiteProfiles | 13 | 128 | 116 | 43.012 | ||
| Pfam | 13 | 133 | 121 | 1.7E-49 | ||
| ProSitePatterns | 66 | 81 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0276600.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…