Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • cd00195
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 150 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.046s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0036909.1
n.a. PREDICTED: constitutive photomorphogenesis protein 10-like [Cicer arietinum] gi|502140763|ref|XP_004504327.1| chr0 11863209 11865412 +
1 domain prediction
 –
Lj0g3v0063729.1
n.a. Ubiquitin-conjugating enzyme 28 isoform 1 [Theobroma cacao] gi|508719952|gb|EOY11849.1| chr0 21739113 21742134 +
1 domain prediction
 –
Lj0g3v0115729.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Solanum lycopersicum] gi|460388869|ref|XP_004240086.1| chr0 50870160 50874030 +
1 domain prediction
 –
Lj0g3v0168999.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 7-like [Fragaria vesca subsp]. vesca] gi|470116820|ref|XP_004294573.1| chr0 80719086 80722645 -
1 domain prediction
 –
Lj0g3v0203099.1
n.a. PREDICTED: SUMO-conjugating enzyme SCE1-like [Cicer arietinum] gi|502160781|ref|XP_004511894.1| chr0 100628043 100630600 -
1 domain prediction
 –
Lj0g3v0293369.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Cicer arietinum] gi|502157139|ref|XP_004510772.1| chr0 152271888 152275244 -
1 domain prediction
 –
Lj0g3v0304639.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 25-like [Glycine max] gi|356542276|ref|XP_003539595.1| chr0 158661338 158665394 -
1 domain prediction
 –
Lj0g3v0326929.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 25-like [Cicer arietinum] gi|502158688|ref|XP_004511247.1| chr0 170885437 170896727 +
1 domain prediction
 –
Lj1g3v0465660.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 2-like isoform 1 [Solanum lycopersicum] gi|460391928|ref|XP_004241570.1| chr1 6223049 6229131 +
1 domain prediction
 –
Lj1g3v0935410.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Glycine max] gi|356516007|ref|XP_003526688.1| chr1 11741792 11744584 +
1 domain prediction
 –
Lj1g3v1466220.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 27-like isoform 1 [Glycine max] gi|356508845|ref|XP_003523164.1| chr1 17549155 17552308 -
1 domain prediction
 –
Lj1g3v1651360.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Glycine max] gi|356519922|ref|XP_003528617.1| chr1 19854737 19855657 -
1 domain prediction
 –
Lj1g3v2063210.1
n.a. PREDICTED: protein PEROXIN-4-like [Cicer arietinum] gi|502131980|ref|XP_004501180.1| chr1 24293601 24296517 +
1 domain prediction
 –
Lj1g3v2533810.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 28-like isoform 1 [Glycine max] gi|356532139|ref|XP_003534631.1| chr1 29047440 29050771 -
1 domain prediction
 –
Lj1g3v2682550.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 5-like [Glycine max] gi|356560787|ref|XP_003548669.1| chr1 31224785 31229081 -
1 domain prediction
 –
Lj1g3v4047170.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 22-like [Cicer arietinum] gi|502107487|ref|XP_004493279.1| chr1 47726338 47730179 +
1 domain prediction
 –
Lj2g3v1803100.1
n.a. PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Cicer arietinum] gi|502161064|ref|XP_004512008.1| chr2 27264272 27269393 -
1 domain prediction
 –
Lj2g3v2089760.1
n.a. Ubiquitin carrier protein [Medicago truncatula] gi|357474045|ref|XP_003607307.1| chr2 31669794 31670709 +
1 domain prediction
 –
Lj2g3v2447150.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 28-like isoform 1 [Glycine max] gi|356532139|ref|XP_003534631.1| chr2 34554624 34559689 -
1 domain prediction
 –
Lj2g3v3054240.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Glycine max] gi|356519922|ref|XP_003528617.1| chr2 39246531 39247502 -
1 domain prediction
 –
Lj3g3v0428400.1
n.a. ubiquitin-conjugating enzyme E2 36 [Arabidopsis thaliana] gi|18394416|ref|NP_564011.1| chr3 3907415 3911934 +
1 domain prediction
 –
Lj3g3v0428400.2
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 35-like [Solanum lycopersicum] gi|460397424|ref|XP_004244267.1| chr3 3907415 3912998 +
1 domain prediction
 –
Lj3g3v1061310.1
n.a. ubiquitin-conjugating enzyme E2 36 [Arabidopsis thaliana] gi|18394416|ref|NP_564011.1| chr3 14167069 14172311 -
1 domain prediction
 –
Lj3g3v1666210.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Glycine max] gi|356564644|ref|XP_003550561.1| chr3 21459543 21460229 +
1 domain prediction
 –
Lj3g3v1953280.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa-like [Fragaria vesca subsp]. vesca] gi|470117130|ref|XP_004294717.1| chr3 25054053 25056060 -
1 domain prediction
 –
Lj3g3v2563430.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Glycine max] gi|356520176|ref|XP_003528740.1| chr3 31175413 31180075 -
1 domain prediction
 –
Lj3g3v3188470.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 7-like [Cicer arietinum] gi|502081948|ref|XP_004487019.1| chr3 39288190 39292474 -
1 domain prediction
 –
Lj3g3v3453420.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Glycine max] gi|356544896|ref|XP_003540883.1| chr3 42219024 42221040 -
1 domain prediction
 –
Lj3g3v3579350.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 20-like isoform X2 [Cicer arietinum] gi|502144341|ref|XP_004505662.1| chr3 43466527 43468277 +
1 domain prediction
 –
Lj4g3v0109540.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Cicer arietinum] gi|502118485|ref|XP_004496290.1| chr4 1001889 1004156 -
1 domain prediction
 –
Lj4g3v0109540.2
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Cicer arietinum] gi|502118485|ref|XP_004496290.1| chr4 1001889 1004156 -
1 domain prediction
 –
Lj4g3v0451220.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Glycine max] gi|356519588|ref|XP_003528454.1| chr4 6664914 6672209 -
1 domain prediction
 –
Lj4g3v0548810.1
n.a. ubiquitin-conjugating enzyme E2 36 [Arabidopsis thaliana] gi|18394416|ref|NP_564011.1| chr4 8940631 8945781 +
1 domain prediction
 –
Lj4g3v1535160.1
n.a. Ubiquitin-conjugating enzyme E2 5 isoform 1 [Theobroma cacao] gi|508773400|gb|EOY20656.1| chr4 23048876 23055800 -
1 domain prediction
 –
Lj4g3v1615840.1
n.a. Ubiquiting-conjugating enzyme 2 [Theobroma cacao] gi|508718611|gb|EOY10508.1| chr4 23812415 23816889 +
1 domain prediction
 –
Lj4g3v2267600.1
n.a. Ubiquitin carrier protein E2 [Medicago truncatula] gi|357478955|ref|XP_003609763.1| chr4 31623585 31625715 -
1 domain prediction
 –
Lj4g3v2267600.2
n.a. Ubiquitin carrier protein E2 [Medicago truncatula] gi|357478955|ref|XP_003609763.1| chr4 31623585 31644264 -
1 domain prediction
 –
Lj4g3v2435000.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 26-like [Glycine max] gi|356510847|ref|XP_003524145.1| chr4 33583874 33593939 +
1 domain prediction
 –
Lj4g3v2604000.1
n.a. PREDICTED: constitutive photomorphogenesis protein 10-like [Cicer arietinum] gi|502140763|ref|XP_004504327.1| chr4 35015760 35017963 -
1 domain prediction
 –
Lj4g3v2973630.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 5-like [Glycine max] gi|356513371|ref|XP_003525387.1| chr4 39323121 39325834 -
1 domain prediction
 –
Lj5g3v1827360.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Cicer arietinum] gi|502118485|ref|XP_004496290.1| chr5 26203711 26206754 -
1 domain prediction
 –
Lj6g3v1904540.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Glycine max] gi|356556010|ref|XP_003546320.1| chr6 21380013 21382602 -
1 domain prediction
 –
Lj6g3v2030860.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Glycine max] gi|356555289|ref|XP_003545966.1| chr6 23993481 24003008 +
1 domain prediction
 –
LotjaGi1g1v0105100.1
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.1 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16234739 16240731 +
2 domain predictions
 –
LotjaGi1g1v0105100.2
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.3 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|A0A0D3EAM2|A0A0D3EAM2_BRAOL Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16234944 16238947 +
2 domain predictions
 –
LotjaGi1g1v0105100.3
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.1 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235121 16239684 +
2 domain predictions
 –
LotjaGi1g1v0105100.4
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.3 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|A0A0D3EAM2|A0A0D3EAM2_BRAOL Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235207 16238968 +
2 domain predictions
 –
LotjaGi1g1v0105100.5
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|M5W1P5|M5W1P5_PRUPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235207 16239684 +
2 domain predictions
 –
LotjaGi1g1v0105100.6
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|A0A0B2QXH0|A0A0B2QXH0_GLYSO Ubiquitin-conjugating enzyme E2-17 kDa; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235207 16239684 +
2 domain predictions
 –
LotjaGi1g1v0105100.7
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|M5W1P5|M5W1P5_PRUPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235830 16239684 +
2 domain predictions
 –