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LotjaGi1g1v0282100.1

Overview

Field Value
Gene ID LotjaGi1g1v0282100
Transcript ID LotjaGi1g1v0282100.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Spermidine synthase; TAIR: AT5G53120.1 spermidine synthase 3; Swiss-Prot: sp|Q94BN2|SPSY_ARATH Spermine synthase; TrEMBL-Plants: tr|A2VC29|A2VC29_LOTJA Spermine synthase; Found in the gene: LotjaGi1g1v0282100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:68774076..68780415) extracted from Lotus japonicus Gifu genome v1.2.

TAGAGAATCAGGATAAAAATCTTATAAATAGAAATGCTCCGTTATCTTCGTTCCATTCCAAATCCAAAGCAAAGGTTTGT GTGTGACAGTGATAGTGAGAAGAGAGAAGGTGAATTTTGGTAACAGAGACAGTGTTTTGTGTTGCGTATCCATCTTCATC CCTTCATTCCTTCCTTCTGGTTCGATTGCGCACAGTACAATCCTCAAAACCACTCTCTCAAACCAGGCAATCTTCTCTTC TCCCTCATCTTCCCCCAATCATCATCATCTTCACTCTCTTTTGCTATATCGTAAACCCTAGCTGCTCAAAATCGCAGTAA TTTTGGTAACGCATTTTGTTTAATTTTCCTGCGTTTTCCGTTTTGCCAAACACGAAGTTCGAACTACTCTCTGTCATCAT TGATCACTGTCGCTATTATTGATATGATTATATTATATGATTATTTGATTATTTCTTGAAAACGGAAGAAAAGGCGATTT TTTTTTTGCTATAATTATATGATATGATTATATATTTTTATGATTGATTCACATTTTATTTTCTACCCTCGCTGATTGAA TGATTGATTCTGAAATTACCATTAATATTGTTAGCTGTATTACACTGTTATAATAATATTATTCTCCTTTATTTGCTAAT TTATTGTTCAGATTATACCTAATTTTGAATTGTACTCTTCTTTTTCTGTGGGTTGTTTTCTTCATCAACAATTTGTCTAT TATTTTATTTAAGGGGCATGTGTTGTTTACTTTTCTTACTTTGTCAGTGAACAAAAGGTAATATTTACTTTGCCTTTAAT CTTTGCTTATAAAAGAAGACACTTTAGTTTGGTATTTAAATGTGAAGAAGATTTTTCCAGTGATATTGTGCTTCTTCTTT ACTAAGTAAAGAGGATTCCTTTTTCTATGTTTGAGGTTTTGTACATTATTTTAATTTTTGTGATAGATTATATGCTTAAT CTGCAGAGACTGGAGCCTGAGAAGAAAAGGATAGTTTATGGGGGACGCCGCAGGAAGAGGTTTGGAATGCCAGAAGACTA TGGATGGGAAGGAGAGTAACAGGAATGGCTTAGAGAAGGAACTTCCTTCATGTTGTTTGAAGGCTATTGCTTCAGACCCT GAGTTGGATGCAAAATGCCATTCCACCGTTGTTTCTGGGTGGTTCTCAGCACCTCAAACTTGCTCTGGTCATTATCAGCT ATTTAATTTTTTGATTTCACTGTGTGGCACTACATAGAGCCAATCTCTGGAGGATAAAATATAAGTGCTGTTAATAACCC TCTTCCTTTTTACCATCTTTTTACAGGGAAATCTGGGAAAGATGCTTATTTCAACAACCCAATGTGGCCAGGTGAGTGTA TGCCGTTATACACGCCGCGTGTATTATTGCCTTGTAACATTGAAGTGCCAGCTTTCCCTTCATGTAACCTGAATTACAAA CCTTGCTTTTAGAAAATGATCTTGTTCTTCTGTTGATGGCCGTGATCCGTGATTATCATAAACTTTTGAACCTTCATAGA GAAGGCTGAATGCGGAAGAAATATGAAAATCCTTGTACAATTTGGCTAAGGAGGATGAACTCGGGGGTTTTTTTCGTTTT AAATTGTATTTTTTTTTTCACTTTTAATTAGAAAAGTGTCACCTTTTGTAAACAATCTTCTATTATTTTCATTTATTTTG ATTATTTCCAATACAGTTTTAAAAAAATCAGGGCAAAACAGCTTCGCTATAAACCAAGTCCAGGGAAGGACCGCACCAAG TTTGTGGATCTAATGTAGACACTCTTACCTTGCATTTTTGTAAGAGGCTGATTCCATGGCAGCAACCTTGGCGTTGCGAA CGTTGCGCCGAGAAAACGTTACTAGATTTTAGATGTGTTGAACCTACTTTCCTTGTTTGTGTTAAACCTTTTAGAAAAAC ATCCTTATTTCTATTTACTTATAACATTGGATATTTTGTTTTGTTTTCTCCGTTTTGAGCTACAAATCATGCCCAATTGC TCCCAAATATACATATTTTTAAACATTTTTAAAAGCACTCATTCCCATTGCCGAATATGCATCTTCTTTTTTTCCTTGTT TGGATTGCTTGACTACTGCTGATGGTTTCTGTGTCTATCATTAGGAGAAGCCCATTCAATCAAAGTAGACAAGATCTTGT ACAAGGAAAAGTCAGAGTACCAAGAGGTCTTGGTTTTTGAGGTTTGGCATCATCTTCTTATAATGTTCTCTAAATTCTAC TTGTAAGTGGTTAGTTATTAACACTTCTTTTTTAACAGTCATCAATATATGGGAAAGTTCTTGTACTTGATGGGATTGTT CAGTTGACTGAGAAGGATGAATGCGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTTCAATTGCGTCCCCAGAAAC TGTAAAGTCTTTTTTTATTTTTATATGATTGATCATTGTTTCGGGTCTCACTTATATCATATCTCTTTGTTGAACATTAT ATTATATAGTAGCTCCAGATTCAATTTCAAAAGTACAGTTCTTTGTTATATCGCTTAGGGAAAATGATATTGCAGAAGCT TTTTGGTATTCAGCAGTTTAGAAGTTGCTTCTTCATGTTCTATTCTTTAATGTTTGTCAGTGCTATCATCTTGATAGACT AGTTGGTTGTGTTTCCTCTTCTCAATGCTTTCATCTGCATGGAGGGAAGCACTTGAAACATGTGAAAATTTGAATTTGAA ATCCTTTTACATTTATATTGTTTTTTTTTTTTGCCTTTTCTGCTTGAATAATCTGCTAATTGATTTGTTTGTTATTGATT CAGGTTTTAGTTGTTGGTGGCGGAGATGGCGGGGTTCTAAGGGAAGTCTCCCGCCACAGCTCTGTGAAGCGTATTGATAT TTGTGAGATAGATAAGATGGTTATTGATGTAAGTTGTGGGCCTTATGACATATTTTAGTATAACTGATTCCATTGATGAG ATAAGCTTTTTATTTCTATTGTTACTTTGTAGGTTTCTAGGAAGTTTTTTCCAGAGTTAGCTGTTGGATTTGATGATCCT CGAGTACACCTGCATGTTGGCGATGGTTTGTTTTTATATCATACAAGTCTCATTTTAAGTTTGTTGAGTTGCCTAGCCTG GCTTTATATTTACCAATTACAAACTAATATAAGGTTATGTGAACATCTTCACTTGATATTTTCTTCACCCACTTTTTTTG GCAGCTGTTGAATTTCTTAGATGTACTCCTGAGGGGAAGTATGATGCTATAATTGTTGATTCCTCAGATCCTGTGGGTAA GCTATTTCAATTTAAAATAATTCACCCAATGTATTCAGTTAATAATGTGTATTATTAGAATTAATGCTAAATCTCAAATG GAACGTAAACTGTGTTTTGAGGAGGGACTATACTTTTCTTCAGTTTAGTGGTTAACTAATAGAGCCTCAGACACAGAATA AGAAATTGCAGAGTAAGAAACAGTGATAACCGAGAGCTTTATTGAATGATCAAAAGTGGATTACAAAAGGAATGGAGTAT TTGCCCTTCAATTCCTTACTCAGAGCTAGGCTCCGTAGAGGAAGTTACAACTTCCTCATCATTCTCACTAATTACAATAT CAAAAGGTCATCTCCACATTTCCTTCCTATTCCTTATATTCAGCAACTAATCTTGCCAGCTCTCCTTTGCATTTGTCCTT TTCTTTAACTAACTTGGTCAGCAATTCCCTTCTTGCCCCTTCTAGAATAAACCTGAAAGATTCTGGGTCTCTTTGTCTTA GTATGAATTAATTCCTCACCTGGCTTAGCCTTAACACCTCGGGTCCTATCATTAACTAGTTGAGGTTGGCCTGAACTCTC GTGCCTCAATGTGACATCCAAGTGTTTAGTCTTCATTTATGAGAAATTTCAGTGTTTTGTTGGCTGTACAATGATTGACT GTCTTTGTCACAATTCTGATTTGAATTCTATCTGAAAGCTTCATTGTCCTATGATTTTTTTCAGAATTTTTGTTGGTAAA TCATTTACTTTGAATTATCCACTAAAATATAAATGATTAAGCTACATACTAATTTTTTATTGGTAGATTCAACAGATTAT TACTCTTCCTTTTTTGGTTATTATGATCAAAAGCTTACAAGATGACTTTTGTATTTTAGGTCCTGCCCAGGAACTTGTAG AGAAACCATTTTTTGAAACATTAGCGAAAGCATTGAGGCCTGGTGGAGTTCTCTGTAACATGGCAGAAAGTATGTGGCTT CATACACACCTTATCCAAGATATGATCTCCGTCTGTAGAGAAACATTTAAAGGTTCTGTACATTATGCATGGGCAAGTGT TCCTACATATCCGAGGTAGTTATGCATTTCTATTTGCTAGTGAATTAATATTTTGTTCTTACTTTGAAGAATAAGGGTAA CTTTTTCTTAAGGTGGGGGCAATTCAGCCTCTTGAGGTACCACTGACATGGTCCGATCCATAAAATATATAATTATAATT GGTATAATGTCGAAGAAGTTCTTAGTAAGCAAGAACCTTTCTTTTTGTCCTCATGCAAAATTTTACAATTTTATATATAA AAATCACATTCAGGTAATAAATCCCAGCTTATGTGGTTTGGGTCACATTGTTGTTGTTGTGTGTTTCAAGGTATAGAGCA GGTTTTCACTTTACCTGCTTGAGAGGATTCAATTTGTTGTTATCCTAAACTAAAAGTTTAGGAAACTGAGATTTTGAAGT TTGATAACTAACCAATGCCTTAGACAATTGCAAAATCTAAAATTCCAAATCAAAAGAGTGTAGTCATTTTTTTATAAACA TGATTGTCATATTTTTTATTTTATTTTATAATAATGGTGATTGTAGCGGCTCATCCCCTTCCTTTCTTGCCCTGCAGTGG TCTGATAGGGTTTCTTCTATGCTCAACGGAGGGGCCACCTGTTGATTTTGTAAACCCCATCAACCCAATTGAAAAGTTGG AAGGTGCAGATAAGCACAAAAGGAAACTTAGATTCTATAACTCAGAGGCAAGTATATTGTCCATAGATAGTTTTCGCCTT ATTGGTTTGAATGATCTATTTTCTTTTGAAACAAAATATCAGAAGAGTGAATGTCTGAAACTATAATGGGTAGCAATTGC ATGTGGCTTTGTTTTTGGTGTTTTCTCATGAGTTATGCTCTTGTTTGTCAATACTCTTGTGTTGTCGACTAAATTCTAAA TTCTAAGCATTGGTTATATATTGATATGCAGTTCTATTTGTATGGGTCCTTGTAAGGTCTCGTCTCTTATGCCAGCAATA TCTACTACACACACAAGATCTAACAACCTTCTTTTTTCTACAGATGCACACAGCTGCTTTCGCGTTGCCTGCATTTCTGA AGAGGGAGGTGAGCTTGATCCGTGATCCTTCCGCTTAGTAGCAACTAATGTTTGCATGTTATAGCCCCTAAATAATCAAT TTGACTTCATATTCATTTGGGGAAATCTCATGACGTGGATGAACATGTAGTCATCCGGGGAAGTAGACCAAATGTGTGAG AAATAGGAAGTTGTGGTGATTATTTGTCAGAAAATTCTATATGTGGAACCTATTTAGCTTTGTTGAACTCTTTGGGCGAT TTTGGATGGCCTTGTCTCTAATTTATTATACTATTGCTATTGCTTTTACGTCTTTGTTATCTATTTCGTTGATTTTGTGG ATCGGAAGTAACCTCACTATTAACACACTCTGTCCATGTTCTGGTACGTGGTGTTAGCTTCCTTCCGTTATCAATGTCAC CTTCAAAGTGTTATTTAAAAGTTGTGTTGTTTGTTTGGGGTATTTAGTTGTGGGGCTTTTGTGATGTTAGTATTTTTGTG GTTTGCGATTCTTTTGGGCTCGAGTAACTATTTTTGAGGTTTTTATTTTATCTTATATATGTTTCTGTTGTTTGGCTGCC TAGATTTTAGTTGTTGATTTTGGATTTTCAATGGATGCACGCACTTATCTTGACACTGATTCACCTCACAATGCATTGGA CTAGAGTTAATGGTTGCGTTGATAGAATACTAAAAAACTTCTTACATGGCAAAAATTACATAGGCTCAAAAGCTAAAATG TAGCTTGTAGTTTAAAAATATTATAATAGATTAAAGTTTAATTTTACATATTATAATGTATTAAAGTGGCTCCAAAAATC TGTTTAAATGTATTTTAAAGAGGTCAGATGAGATTATGTTAAACTATATTTAGTGAATGCTTTTCATATTTGAAATTCAT GTCTTAGATGTTGATAGAGTTGAAACTGTTACTTAAAAGGATCATTTGGAATTGAAAAATAAAAGAGGAGAGGGCTCCAA TTATTTAAAATTTCTTTAAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0282100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGGACGCCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAGGAATGGCTTAGAGAA GGAACTTCCTTCATGTTGTTTGAAGGCTATTGCTTCAGACCCTGAGTTGGATGCAAAATGCCATTCCACCGTTGTTTCTG GGTGGTTCTCAGCACCTCAAACTTGCTCTGGGAAATCTGGGAAAGATGCTTATTTCAACAACCCAATGTGGCCAGGAGAA GCCCATTCAATCAAAGTAGACAAGATCTTGTACAAGGAAAAGTCAGAGTACCAAGAGGTCTTGGTTTTTGAGTCATCAAT ATATGGGAAAGTTCTTGTACTTGATGGGATTGTTCAGTTGACTGAGAAGGATGAATGCGCTTACCAGGAGATGATAGCTC ATCTTCCCCTTTGTTCAATTGCGTCCCCAGAAACTGTTTTAGTTGTTGGTGGCGGAGATGGCGGGGTTCTAAGGGAAGTC TCCCGCCACAGCTCTGTGAAGCGTATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAGTTTTTTCC AGAGTTAGCTGTTGGATTTGATGATCCTCGAGTACACCTGCATGTTGGCGATGCTGTTGAATTTCTTAGATGTACTCCTG AGGGGAAGTATGATGCTATAATTGTTGATTCCTCAGATCCTGTGGGTCCTGCCCAGGAACTTGTAGAGAAACCATTTTTT GAAACATTAGCGAAAGCATTGAGGCCTGGTGGAGTTCTCTGTAACATGGCAGAAAGTATGTGGCTTCATACACACCTTAT CCAAGATATGATCTCCGTCTGTAGAGAAACATTTAAAGGTTCTGTACATTATGCATGGGCAAGTGTTCCTACATATCCGA GTGGTCTGATAGGGTTTCTTCTATGCTCAACGGAGGGGCCACCTGTTGATTTTGTAAACCCCATCAACCCAATTGAAAAG TTGGAAGGTGCAGATAAGCACAAAAGGAAACTTAGATTCTATAACTCAGAGGCAACAATTGCATGTGGTCTCGTCTCTTA TGCCAGCAATATCTACTACACACACAAGATCTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0282100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGDAAGRGLECQKTMDGKESNRNGLEKELPSCCLKAIASDPELDAKCHSTVVSGWFSAPQTCSGKSGKDAYFNNPMWPGE AHSIKVDKILYKEKSEYQEVLVFESSIYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIASPETVLVVGGGDGGVLREV SRHSSVKRIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHVGDAVEFLRCTPEGKYDAIIVDSSDPVGPAQELVEKPFF ETLAKALRPGGVLCNMAESMWLHTHLIQDMISVCRETFKGSVHYAWASVPTYPSGLIGFLLCSTEGPPVDFVNPINPIEK LEGADKHKRKLRFYNSEATIACGLVSYASNIYYTHKI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11558
1 341 341 1.6E-202 –
PANTHER
PTHR11558:SF25
1 341 341 1.6E-202 –
Gene3D
G3DSA:2.30.140.10
46 119 74 1.2E-27
IPR037163
ProSiteProfiles
PS51006
53 304 252 95.042
IPR030374
Hamap
MF_00198
54 353 300 31.729
IPR001045
SUPERFAMILY
SSF53335
71 342 272 9.0E-81
IPR029063
Pfam
PF17284
75 122 48 7.5E-21
IPR035246
TIGRFAM
TIGR00417
79 337 259 2.1E-87
IPR001045
Gene3D
G3DSA:3.40.50.150
120 347 228 2.7E-84 –
Pfam
PF01564
125 310 186 2.0E-64 –
ProSitePatterns
PS01330
146 159 14 -
IPR030373
CDD
cd02440
167 253 87 1.08895E-9 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0282100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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