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IPR001045

Description

IPR001045 is a Spermidine/spermine synthases.

<p>The nearly ubiquitous polyamines (putrescine, spermidine and spermine) are polycationic mediators of cell proliferation and differentiation whose functions likely provide both stability and neutralisation for nucleic acids. The following polyamine biosynthetic enzymes are evolutionary related [[cite:PUB00004525]]:</p> <ul> <li>Spermidine synthase ([ec:2.5.1.16]) (putrescine aminopropyltransferase). It catalyses the last step in the biosynthesis of spermidine from arginine and methionine; the conversion of putrescine to spermidine using decarboxylated S-adenosylmethionine as the cofactor.</li> <li>Spermine synthase ([ec:2.5.1.22]) (spermidine aminopropyltransferase). It converts spermidine into spermine using decarboxylated S-adenosylmethionine as the cofactor.</li> <li>Putrescine N-methyltransferase ([ec:2.1.1.53]). It catalyzes a step in the biosynthesis of nicotine in plants; the methylation of putrescine to N- methylputrescine using S-adenosylmethionine as the cofactor.</li> </ul> <p>The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six β-strands, and a Rossmann-like C- terminal domain. The larger C-terminal catalytic core domain consists of a seven-stranded β-sheet flanked by nine α-helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [[cite:PUB00015422]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

Associated Lotus transcripts 16

Transcript Name Description Predicted domains Domain count
Spermidine synthase [Ammopiptanthus mongolicus] gi|99083515|gb|ABF66657.1| 15
Spermidine synthase [Ammopiptanthus mongolicus] gi|99083515|gb|ABF66657.1| 13
Spermine synthase [Lotus japonicus] gi|126153733|emb|CAM35498.1| 14
Spermidine synthase [Lotus japonicus] gi|126153731|emb|CAM35497.1| 18
PREDICTED: thermospermine synthase ACAULIS5-like [Glycine max] gi|356552394|ref|XP_003544553.1| 12
PREDICTED: thermospermine synthase ACAULIS5-like [Glycine max] gi|356536017|ref|XP_003536537.1| 12
Spermidine synthase; TAIR: AT5G53120.1 spermidine synthase 3; Swiss-Prot: sp|Q94BN2|SPSY_ARATH Spermine synthase; TrEMBL-Plants: tr|A2VC29|A2VC29_LOTJA Spermine synthase; Found in the gene: LotjaGi1g1v0282100 18
Spermidine synthase; TAIR: AT5G53120.1 spermidine synthase 3; Swiss-Prot: sp|Q94BN2|SPSY_ARATH Spermine synthase; TrEMBL-Plants: tr|A2VC29|A2VC29_LOTJA Spermine synthase; Found in the gene: LotjaGi1g1v0282100 20
Spermidine synthase; TAIR: AT5G53120.1 spermidine synthase 3; Swiss-Prot: sp|Q94BN2|SPSY_ARATH Spermine synthase; TrEMBL-Plants: tr|A2VC29|A2VC29_LOTJA Spermine synthase; Found in the gene: LotjaGi1g1v0282100 18
Spermidine synthase; TAIR: AT5G53120.1 spermidine synthase 3; Swiss-Prot: sp|Q94BN2|SPSY_ARATH Spermine synthase; TrEMBL-Plants: tr|A2VC29|A2VC29_LOTJA Spermine synthase; Found in the gene: LotjaGi1g1v0282100 18
Spermidine synthase; TAIR: AT1G23820.1 spermidine synthase; Swiss-Prot: sp|Q9ZTR1|SPD1_PEA Spermidine synthase 1; TrEMBL-Plants: tr|A2VC28|A2VC28_LOTJA Spermidine synthase; Found in the gene: LotjaGi2g1v0319700 21
Spermidine synthase; TAIR: AT1G23820.1 spermidine synthase; Swiss-Prot: sp|Q9ZTR0|SPD2_PEA Spermidine synthase 2; TrEMBL-Plants: tr|A0A151SJ65|A0A151SJ65_CAJCA Spermidine synthase 2; Found in the gene: LotjaGi4g1v0164700 21
Spermidine synthase; TAIR: AT1G23820.1 spermidine synthase; Swiss-Prot: sp|Q96557|SPD2_DATST Spermidine synthase 2; TrEMBL-Plants: tr|K7MKR2|K7MKR2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0236200 18
Polyamine aminopropyltransferase; TAIR: AT5G19530.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q9S7X6|ACL5_ARATH Thermospermine synthase ACAULIS5; TrEMBL-Plants: tr|I3SH85|I3SH85_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0046400 15
Polyamine aminopropyltransferase; TAIR: AT5G19530.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q9S7X6|ACL5_ARATH Thermospermine synthase ACAULIS5; TrEMBL-Plants: tr|I3SH85|I3SH85_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0046400 15
Polyamine aminopropyltransferase; TAIR: AT5G19530.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q9S7X6|ACL5_ARATH Thermospermine synthase ACAULIS5; TrEMBL-Plants: tr|I3S1F7|I3S1F7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0314600 15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd02440 CDD 1 6.25